Fixed ramses

python/_cosmotool.pyx

@@ -301,3 +301,5 @@ def loadRamses(str basepath, int snapshot_id, int cpu_id, bool doublePrecision =
     return None
 
   return _PySimulationAdaptor(wrap_simudata(data, flags))
+  
+def loadAllRamses(str basepath, int 

python/cosmotool/__init__.py

@@ -5,9 +5,53 @@ from borg import read_borg_vol
 
 class SimulationBare(PySimulationBase):
 
-  def __init__(self):
-    pass
-        
+  def __init__(self, *args):
+    if len(args) == 0:
+      return
+      
+    if not isinstance(args[0], PySimulationBase):
+      raise TypeError("Simulation object to mirror must be a PySimulationBase")
+    s = args[0]
+
+    self.positions = s.getPositions()
+    self.velocities = s.getVelocities()
+    self.identifiers = s.getIdentifiers()
+    self.boxsize = s.getBoxsize()
+    self.time = s.getTime()
+    self.Hubble = s.getHubble()
+    self.Omega_M = s.getOmega_M()
+    self.Omega_Lambda = s.getOmega_Lambda()
+  
+  
+  def merge(self, other):
+
+    def _safe_merge(a, b):
+      if b:
+        if a:
+          a = [np.append(q, r) for q,r in zip(a,other.positions)]
+        else:
+          a = b
+      return a
+      
+    def _safe_merge0(a, b):
+      if b:
+        if a:
+          a = np.append(a, b)
+        else:
+          a = b
+      return a
+  
+  
+    assert self.time == other.time
+    assert self.Hubble == other.Hubble
+    assert self.boxsize == other.boxsize
+    assert self.Omega_M == other.Omega_M
+    assert self.Omega_Lambda == other.Omega_Lambda
+    
+    self.positions = _safe_merge(self.positions, other.positions)
+    self.velocities = _safe_merge(self.velocities, other.velocities)
+    self.identifiers = _safe_merge0(self.idenfiers, other.identifiers)
+    
   def getPositions(self):
     return self.positions
     
@@ -56,3 +100,18 @@ def simpleWriteGadget(filename, positions, boxsize=1.0, Hubble=100, Omega_M=0.30
   s.boxsize = boxsize
     
   writeGadget(filename, s)
+  
+def loadRamsesAll(basepath, snapshot_id, **kwargs):
+
+  cpu_id = 0
+  output = None
+  while True:
+    s = loadRamses("%s/output_%05d" % (basepath,snapshot_id), cpu_id, **kwargs)
+    if s == None:
+      break
+    if output == None:
+      output = SimulationBare(s)
+    else:
+      output.merge(s)
+      
+    cpu_id += 1