mirror of
https://github.com/DifferentiableUniverseInitiative/JaxPM.git
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bench
This commit is contained in:
Wassim KABALAN
parent
9af4659c81
commit
831291c1f9
8 changed files with 790 additions and 114 deletions
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@ -1,249 +0,0 @@
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import os
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os.environ["EQX_ON_ERROR"] = "nan" # avoid an allgather caused by diffrax
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import jax
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jax.distributed.initialize()
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rank = jax.process_index()
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size = jax.process_count()
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import argparse
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import time
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from hpc_plotter.timer import Timer
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import jax.numpy as jnp
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import jax_cosmo as jc
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import numpy as np
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from cupy.cuda.nvtx import RangePop, RangePush
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from diffrax import (ConstantStepSize, Dopri5, LeapfrogMidpoint, ODETerm,
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PIDController, SaveAt, Tsit5, diffeqsolve)
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from jax.experimental import mesh_utils
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from jax.experimental.multihost_utils import sync_global_devices
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from jax.sharding import Mesh, NamedSharding
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from jax.sharding import PartitionSpec as P
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from jaxpm.kernels import interpolate_power_spectrum
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from jaxpm.painting import cic_paint_dx
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from jaxpm.pm import linear_field, lpt, make_ode_fn
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def run_simulation(mesh_shape,
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box_size,
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halo_size,
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solver_choice,
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iterations,
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pdims=None):
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@jax.jit
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def simulate(omega_c, sigma8):
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# Create a small function to generate the matter power spectrum
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k = jnp.logspace(-4, 1, 128)
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pk = jc.power.linear_matter_power(
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jc.Planck15(Omega_c=omega_c, sigma8=sigma8), k)
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pk_fn = lambda x: interpolate_power_spectrum(x, k, pk)
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# Create initial conditions
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initial_conditions = linear_field(mesh_shape,
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box_size,
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pk_fn,
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seed=jax.random.PRNGKey(0))
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# Create particles
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cosmo = jc.Planck15(Omega_c=omega_c, sigma8=sigma8)
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dx, p, _ = lpt(cosmo, initial_conditions, 0.1, halo_size=halo_size)
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if solver_choice == "Dopri5":
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solver = Dopri5()
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elif solver_choice == "LeapfrogMidpoint":
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solver = LeapfrogMidpoint()
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elif solver_choice == "Tsit5":
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solver = Tsit5()
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elif solver_choice == "lpt":
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lpt_field = cic_paint_dx(dx, halo_size=halo_size)
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print(f"TYPE of lpt_field: {type(lpt_field)}")
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return lpt_field, {"num_steps": 0}
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else:
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raise ValueError(
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"Invalid solver choice. Use 'Dopri5' or 'LeapfrogMidpoint'.")
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# Evolve the simulation forward
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ode_fn = make_ode_fn(mesh_shape, halo_size=halo_size)
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term = ODETerm(
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lambda t, state, args: jnp.stack(ode_fn(state, t, args), axis=0))
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if solver_choice == "Dopri5" or solver_choice == "Tsit5":
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stepsize_controller = PIDController(rtol=1e-4, atol=1e-4)
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elif solver_choice == "LeapfrogMidpoint" or solver_choice == "Euler":
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stepsize_controller = ConstantStepSize()
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res = diffeqsolve(term,
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solver,
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t0=0.1,
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t1=1.,
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dt0=0.01,
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y0=jnp.stack([dx, p], axis=0),
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args=cosmo,
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saveat=SaveAt(t1=True),
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stepsize_controller=stepsize_controller)
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# Return the simulation volume at requested
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state = res.ys[-1]
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final_field = cic_paint_dx(state[0], halo_size=halo_size)
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return final_field, res.stats
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def run():
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# Warm start
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chrono_fun = Timer()
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RangePush("warmup")
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final_field, stats = chrono_fun.chrono_jit(simulate, 0.32, 0.8 , ndarray_arg = 0)
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RangePop()
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sync_global_devices("warmup")
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for i in range(iterations):
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RangePush(f"sim iter {i}")
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final_field, stats = chrono_fun.chrono_fun(simulate, 0.32, 0.8 , ndarray_arg = 0)
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RangePop()
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return final_field, stats, chrono_fun
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if jax.device_count() > 1:
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devices = mesh_utils.create_device_mesh(pdims)
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mesh = Mesh(devices.T, axis_names=('x', 'y'))
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with mesh:
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# Warm start
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final_field, stats, chrono_fun = run()
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else:
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final_field, stats, chrono_fun = run()
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return final_field, stats, chrono_fun
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if __name__ == "__main__":
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parser = argparse.ArgumentParser(
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description='JAX Cosmo Simulation Benchmark')
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parser.add_argument('-m',
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'--mesh_size',
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type=int,
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help='Mesh size',
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required=True)
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parser.add_argument('-b',
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'--box_size',
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type=float,
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help='Box size',
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required=True)
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parser.add_argument('-p',
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'--pdims',
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type=str,
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help='Processor dimensions',
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default=None)
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parser.add_argument('-pr',
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'--precision',
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type=str,
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help='Precision',
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choices=["float32", "float64"],)
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parser.add_argument('-hs',
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'--halo_size',
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type=int,
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help='Halo size',
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required=True)
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parser.add_argument('-s',
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'--solver',
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type=str,
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help='Solver',
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choices=[
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"Dopri5", "dopri5", "d5", "Tsit5", "tsit5", "t5",
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"LeapfrogMidpoint", "leapfrogmidpoint", "lfm",
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"lpt"
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],
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required=True)
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parser.add_argument('-i',
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'--iterations',
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type=int,
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help='Number of iterations',
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default=10)
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parser.add_argument('-o',
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'--output_path',
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type=str,
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help='Output path',
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default=".")
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parser.add_argument('-f',
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'--save_fields',
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action='store_true',
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help='Save fields')
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parser.add_argument('-n',
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'--nodes',
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type=int,
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help='Number of nodes',
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default=1)
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args = parser.parse_args()
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mesh_size = args.mesh_size
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box_size = [args.box_size] * 3
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halo_size = args.halo_size
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solver_choice = args.solver
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iterations = args.iterations
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output_path = args.output_path
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os.makedirs(output_path, exist_ok=True)
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print(f"solver choice: {solver_choice}")
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match solver_choice:
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case "Dopri5" | "dopri5"| "d5":
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solver_choice = "Dopri5"
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case "Tsit5"| "tsit5"| "t5":
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solver_choice = "Tsit5"
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case "LeapfrogMidpoint"| "leapfrogmidpoint"| "lfm":
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solver_choice = "LeapfrogMidpoint"
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case "lpt":
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solver_choice = "lpt"
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case _:
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raise ValueError(
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"Invalid solver choice. Use 'Dopri5', 'Tsit5', 'LeapfrogMidpoint' or 'lpt"
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)
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if args.precision == "float32":
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jax.config.update("jax_enable_x64", False)
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elif args.precision == "float64":
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jax.config.update("jax_enable_x64", True)
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if args.pdims:
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pdims = tuple(map(int, args.pdims.split("x")))
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else:
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pdims = (1, 1)
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mesh_shape = [mesh_size] * 3
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final_field , stats, chrono_fun = run_simulation(mesh_shape, box_size, halo_size, solver_choice, iterations, pdims)
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print(f"shape of final_field {final_field.shape} and sharding spec {final_field.sharding} and local shape {final_field.addressable_data(0).shape}")
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metadata = {
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'rank': rank,
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'function_name': f'JAXPM-{solver_choice}',
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'precision': args.precision,
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'x': str(mesh_size),
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'y': str(mesh_size),
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'z': str(stats["num_steps"]),
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'px': str(pdims[0]),
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'py': str(pdims[1]),
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'backend': 'NCCL',
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'nodes': str(args.nodes)
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}
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# Print the results to a CSV file
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chrono_fun.print_to_csv(f'{output_path}/jaxpm_benchmark.csv', **metadata)
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# Save the final field
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nb_gpus = jax.device_count()
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pdm_str = f"{pdims[0]}x{pdims[1]}"
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field_folder = f"{output_path}/final_field/{nb_gpus}/{mesh_size}_{int(box_size[0])}/{pdm_str}/{solver_choice}/{halo_size}"
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os.makedirs(field_folder, exist_ok=True)
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with open(f'{field_folder}/jaxpm.log', 'w') as f:
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f.write(f"Args: {args}\n")
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f.write(f"JIT time: {chrono_fun.jit_time:.4f} ms\n")
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for i , time in enumerate(chrono_fun.times):
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f.write(f"Time {i}: {time:.4f} ms\n")
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f.write(f"Stats: {stats}\n")
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if args.save_fields:
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np.save(f'{field_folder}/final_field_0_{rank}.npy',
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final_field.addressable_data(0))
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print(f"Finished! ")
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print(f"Stats {stats}")
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print(f"Saving to {output_path}/jax_pm_benchmark.csv")
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print(f"Saving field and logs in {field_folder}")
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@ -1,131 +0,0 @@
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import os
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# Change JAX GPU memory preallocation fraction
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os.environ['XLA_PYTHON_CLIENT_MEM_FRACTION'] = '.95'
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import jax
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import argparse
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import numpy as np
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import matplotlib.pyplot as plt
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from pmwd import (
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Configuration,
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Cosmology, SimpleLCDM,
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boltzmann, linear_power, growth,
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white_noise, linear_modes,
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lpt, nbody, scatter
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)
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from pmwd.pm_util import fftinv
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from pmwd.spec_util import powspec
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from pmwd.vis_util import simshow
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from hpc_plotter.timer import Timer
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# Simulation configuration
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def run_pmwd_simulation(ptcl_grid_shape, ptcl_spacing, solver , iterations, output_path):
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@jax.jit
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def simulate(omega_m, sigma8):
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conf = Configuration(ptcl_spacing, ptcl_grid_shape, mesh_shape=1)
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print(conf)
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print(f'Simulating {conf.ptcl_num} particles with a {conf.mesh_shape} mesh for {conf.a_nbody_num} time steps.')
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cosmo = Cosmology(conf, A_s_1e9=2.0, n_s=0.96, Omega_m=omega_m, Omega_b=sigma8, h=0.7)
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print(cosmo)
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# Boltzmann calculation
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cosmo = boltzmann(cosmo, conf)
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print("Boltzmann calculation completed.")
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# Generate white noise field and scale with the linear power spectrum
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seed = 0
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modes = white_noise(seed, conf)
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modes = linear_modes(modes, cosmo, conf)
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print("Linear modes generated.")
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# Solve LPT at some early time
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ptcl, obsvbl = lpt(modes, cosmo, conf)
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print("LPT solved.")
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if solver == "lfm":
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# N-body time integration from LPT initial conditions
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ptcl, obsvbl = jax.block_until_ready(nbody(ptcl, obsvbl, cosmo, conf))
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print("N-body time integration completed.")
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# Scatter particles to mesh to get the density field
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dens = scatter(ptcl, conf)
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return dens
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chrono_timer = Timer()
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final_field = chrono_timer.chrono_jit(simulate, 0.3, 0.05)
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for _ in range(iterations):
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final_field = chrono_timer.chrono_fun(simulate, 0.3, 0.05)
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return final_field , chrono_timer
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if __name__ == "__main__":
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parser = argparse.ArgumentParser(description='PMWD Simulation')
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parser.add_argument('-m', '--mesh_size', type=int, help='Mesh size', required=True)
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parser.add_argument('-b', '--box_size', type=float, help='Box size', required=True)
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parser.add_argument('-i', '--iterations', type=int, help='Number of iterations', default=10)
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parser.add_argument('-o', '--output_path', type=str, help='Output path', default=".")
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parser.add_argument('-f', '--save_fields', action='store_true', help='Save fields')
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parser.add_argument('-s', '--solver', type=str, help='Solver', choices=["lfm" , "lpt"])
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parser.add_argument('-pr',
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'--precision',
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type=str,
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help='Precision',
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choices=["float32", "float64"],)
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args = parser.parse_args()
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mesh_shape = [args.mesh_size] * 3
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ptcl_spacing = args.box_size /args.mesh_size
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iterations = args.iterations
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solver = args.solver
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output_path = args.output_path
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if args.precision == "float32":
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jax.config.update("jax_enable_x64", False)
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elif args.precision == "float64":
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jax.config.update("jax_enable_x64", True)
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os.makedirs(output_path, exist_ok=True)
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final_field , chrono_fun = run_pmwd_simulation(mesh_shape, ptcl_spacing, solver, iterations, output_path)
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print("PMWD simulation completed.")
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metadata = {
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'rank': 0,
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'function_name': f'PMWD-{solver}',
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'precision': args.precision,
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'x': str(mesh_shape[0]),
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'y': str(mesh_shape[0]),
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'z': str(mesh_shape[0]),
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'px': "1",
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'py': "1",
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'backend': 'NCCL',
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'nodes': "1"
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}
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chrono_fun.print_to_csv(f"{output_path}/pmwd.csv", **metadata)
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field_folder = f"{output_path}/final_field/1/{args.mesh_size}_{int(args.box_size)}/{args.solver}"
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os.makedirs(field_folder, exist_ok=True)
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with open(f"{field_folder}/pmwd.log", "w") as f:
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f.write(f"PMWD simulation completed.\n")
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f.write(f"Args : {args}\n")
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f.write(f"JIT time: {chrono_fun.jit_time:.4f} ms\n")
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for i , time in enumerate(chrono_fun.times):
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f.write(f"Time {i}: {time:.4f} ms\n")
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if args.save_fields:
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np.save(f"{field_folder}/final_field_0_0.npy", final_field)
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print("Fields saved.")
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print(f"saving to {output_path}/pmwd.csv")
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print(f"saving field and logs to {field_folder}/pmwd.log")
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