Fix sharding error (#37)

* Use cosmo as arg for the ODE function

* Update examples

* format

* notebook update

* fix tests

* add correct annotations for weights in painting and warning for cic_paint in distributed pm

* update test_against_fpm

* update distributed tests and add jacfwd jacrev and vmap tests

* format

* add Caveats to notebook readme

* final touches

* update Growth.py to allow using FastPM solver

* fix 2D painting when input is (X , Y , 2) shape

* update cic read halo size and notebooks examples

* Allow env variable control of caching in growth

* Format

* update test jax version

* update notebooks/03-MultiGPU_PM_Halo.ipynb

* update numpy install in wf

* update tolerance :)

* reorganize install in test workflow

* update tests

* add mpi4py

* update tests.yml

* update tests

* update wf

* format

* make normal_field signature consistent with jax.random.normal

* update by default normal_field dtype to match JAX

* format

* debug test workflow

* format

* debug test workflow

* updating tests

* fix accuracy

* fixed tolerance

* adding caching

* Update conftest.py

* Update tolerance and precision settings in distributed PM tests

* revererting back changes to growth.py

---------

Co-authored-by: Francois Lanusse <fr.eiffel@gmail.com>
Co-authored-by: Francois Lanusse <EiffL@users.noreply.github.com>

.github/workflows/formatting.yml

@@ -7,15 +7,37 @@ on:
     branches: [ "main" ]
 
 jobs:
-  build:
+  formatting:
     runs-on: ubuntu-latest
     steps:
-    - uses: actions/checkout@v4
-    - name: Set up Python ${{ matrix.python-version }}
-      uses: actions/setup-python@v3
+    - name: Checkout Source
+      uses: actions/checkout@v4
+
+    - name: Set up Python
+      uses: actions/setup-python@v5
+      with:
+        python-version: "3.11"
+
+    - name: Cache pip dependencies
+      uses: actions/cache@v4
+      with:
+        path: ~/.cache/pip
+        key: ${{ runner.os }}-formatting-pip-${{ hashFiles('.pre-commit-config.yaml') }}
+        restore-keys: |
+          ${{ runner.os }}-formatting-pip-
+
+    - name: Cache pre-commit
+      uses: actions/cache@v4
+      with:
+        path: ~/.cache/pre-commit
+        key: ${{ runner.os }}-pre-commit-${{ hashFiles('.pre-commit-config.yaml') }}
+        restore-keys: |
+          ${{ runner.os }}-pre-commit-
+
     - name: Install dependencies
       run: |
-        python -m pip install --upgrade pip isort
-        python -m pip install pre-commit
+        python -m pip install --upgrade pip
+        python -m pip install pre-commit isort
+
     - name: Run pre-commit
       run: python -m pre_commit run --all-files