JaxPM/.pre-commit-config.yaml

repos:
-   repo: https://github.com/pre-commit/pre-commit-hooks
    rev: v2.3.0
    hooks:
    -   id: check-yaml
    -   id: end-of-file-fixer
    -   id: trailing-whitespace
-   repo: https://github.com/google/yapf
    rev: v0.40.2
    hooks:
    - id: yapf
      args: ['--parallel', '--in-place']
-   repo: https://github.com/pycqa/isort
    rev: 5.13.2
    hooks:
      - id: isort
        name: isort (python)
Applying formatting 2024-07-09 14:54:34 -04:00			`repos:`
			`- repo: https://github.com/pre-commit/pre-commit-hooks`
			`rev: v2.3.0`
			`hooks:`
			`- id: check-yaml`
			`- id: end-of-file-fixer`
			`- id: trailing-whitespace`
			`- repo: https://github.com/google/yapf`
			`rev: v0.40.2`
			`hooks:`
			`- id: yapf`
			`args: ['--parallel', '--in-place']`
			`- repo: https://github.com/pycqa/isort`
			`rev: 5.13.2`
			`hooks:`
			`- id: isort`
jaxdecomp proto (#21) * adding example of distributed solution * put back old functgion * update formatting * add halo exchange and slice pad * apply formatting * implement distributed optimized cic_paint * Use new cic_paint with halo * Fix seed for distributed normal * Wrap interpolation function to avoid all gather * Return normal order frequencies for single GPU * add example * format * add optimised bench script * times in ms * add lpt2 * update benchmark and add slurm * Visualize only final field * Update scripts/distributed_pm.py Co-authored-by: Francois Lanusse <EiffL@users.noreply.github.com> * Adjust pencil type for frequencies * fix painting issue with slabs * Shared operation in fourrier space now take inverted sharding axis for slabs * add assert to make pyright happy * adjust test for hpc-plotter * add PMWD test * bench * format * added github workflow * fix formatting from main * Update for jaxDecomp pure JAX * revert single halo extent change * update for latest jaxDecomp * remove fourrier_space in autoshmap * make normal_field work with single controller * format * make distributed pm work in single controller * merge bench_pm * update to leapfrog * add a strict dependency on jaxdecomp * global mesh no longer needed * kernels.py no longer uses global mesh * quick fix in distributed * pm.py no longer uses global mesh * painting.py no longer uses global mesh * update demo script * quick fix in kernels * quick fix in distributed * update demo * merge hugos LPT2 code * format * Small fix * format * remove duplicate get_ode_fn * update visualizer * update compensate CIC * By default check_rep is false for shard_map * remove experimental distributed code * update PGDCorrection and neural ode to use new fft3d * jaxDecomp pfft3d promotes to complex automatically * remove deprecated stuff * fix painting issue with read_cic * use jnp interp instead of jc interp * delete old slurms * add notebook examples * apply formatting * add distributed zeros * fix code in LPT2 * jit cic_paint * update notebooks * apply formating * get local shape and zeros can be used by users * add a user facing function to create uniform particle grid * use jax interp instead of jax_cosmo * use float64 for enmeshing * Allow applying weights with relative cic paint * Weights can be traced * remove script folder * update example notebooks * delete outdated design file * add readme for tutorials * update readme * fix small error * forgot particles in multi host * clarifying why cic_paint_dx is slower * clarifying the halo size dependence on the box size * ability to choose snapshots number with MultiHost script * Adding animation notebook * Put plotting in package * Add finite difference laplace kernel + powerspec functions from Hugo Co-authored-by: Hugo Simonfroy <hugo.simonfroy@gmail.com> * Put plotting utils in package * By default use absoulute painting with * update code * update notebooks * add tests * Upgrade setup.py to pyproject * Format * format tests * update test dependencies * add test workflow * fix deprecated FftType in jaxpm.kernels * Add aboucaud comments * JAX version is 0.4.35 until Diffrax new release * add numpy explicitly as dependency for tests * fix install order for tests * add numpy to be installed * enforce no build isolation for fastpm * pip install jaxpm test without build isolation * bump jaxdecomp version * revert test workflow * remove outdated tests --------- Co-authored-by: EiffL <fr.eiffel@gmail.com> Co-authored-by: Francois Lanusse <EiffL@users.noreply.github.com> Co-authored-by: Wassim KABALAN <wassim@apc.in2p3.fr> Co-authored-by: Hugo Simonfroy <hugo.simonfroy@gmail.com> Former-commit-id: 8c2e823d4669eac712089bf7f85ffb7912e8232d 2024-12-20 11:44:02 +01:00			`name: isort (python)`