Add TFR and SN mock generation to BORG scripts

conf/borg_mock_ini.ini

@@ -0,0 +1,162 @@
+[system]
+console_output = borg_log
+VERBOSE_LEVEL = 2
+N0 = 64
+N1 = 64
+N2 = 64
+L0 = 500.0
+L1 = 500.0
+L2 = 500.0
+corner0 = -250.0
+corner1 = -250.0
+corner2 = -250.0
+NUM_MODES = 100
+test_mode = true
+seed_cpower = true
+
+[block_loop]
+hades_sampler_blocked = false
+bias_sampler_blocked= true
+nmean_sampler_blocked= true
+sigma8_sampler_blocked = true
+omega_m_sampler_blocked = true
+alpha_sampler_blocked = false
+sig_v_sampler_blocked = false
+bulk_flow_sampler_blocked = false
+ares_heat = 1.0
+
+[mcmc]
+number_to_generate = 4
+warmup_model = 200
+warmup_cosmo = 800
+random_ic = false
+init_random_scaling = 0.1
+bignum = 1e20
+
+[hades]
+algorithm = HMC
+max_epsilon = 0.01
+max_timesteps = 50
+mixing = 1
+
+[sampling]
+algorithm = slice
+epsilon = 0.005
+Nsteps = 20
+refresh = 0.1
+rng_seed = 1
+warmup_nsteps = 400
+warmup_target_acceptance_rate = 0.7
+
+[model]
+gravity = lpt
+forcesampling = 4
+supersampling = 2
+velocity = CICModel
+af = 1.0
+ai = 0.05
+nsteps = 20
+Rsmooth = 4.
+bias_epsilon = 1e-7
+interp_order = 1
+sig_v = 150.
+R_lim = 220
+Nint_points = 201 
+Nsig = 10
+bulk_flow = [0.0, 0.0, 0.0]
+
+[prior]
+omega_m = [0.1, 0.8]
+sigma8 = [0.1, 1.5]
+alpha = [0.0, 10.0]
+sig_v = [50.0, 200.0]
+bulk_flow = [-200.0, 200.0]
+
+[cosmology]
+omega_r = 0
+fnl = 0
+omega_k = 0
+omega_m = 0.315
+omega_b = 0.049
+omega_q = 0.685
+h100 = 0.68
+sigma8 = 0.81
+n_s = 0.97
+w = -1
+wprime = 0
+beta = 1.5
+z0 = 0
+
+[run]
+run_type = mock
+NCAT = 0
+NSAMP = 4
+
+[mock]
+seed = 12345
+R_max = 100
+
+[python]
+likelihood_path = /home/bartlett/fsigma8/borg_velocity/borg_velocity/likelihood.py
+
+[sample_0]
+tracer_type = tfr
+Nt = 1247
+alpha = 1.4
+a_TFR = -23
+b_TFR = -8.2
+sigma_TFR = 0.3
+sigma_m = 0.042
+sigma_eta = 0.01
+hyper_eta_mu = 0.08
+hyper_eta_sigma = 0.13
+mthresh = 11.25
+frac_sig_rhMpc = 0.07
+
+[sample_1]
+tracer_type = tfr
+Nt = 2010
+alpha = 1.4
+a_TFR = -23
+b_TFR = -8.2
+sigma_TFR = 0.3
+sigma_m = 0.042
+sigma_eta = 0.01
+hyper_eta_mu = 0.08
+hyper_eta_sigma = 0.13
+mthresh = 11.25
+frac_sig_rhMpc = 0.07
+
+[sample_2]
+tracer_type = sn
+Nt = 125
+alpha = 1.4
+a_tripp = 0.140
+b_tripp = 2.78
+M_SN =  -18.558
+sigma_SN = 0.082
+sigma_m = 0.04
+sigma_stretch = 0.17
+sigma_c = 0.04
+hyper_stretch_mu = -0.04
+hyper_stretch_sigma = 1.23
+hyper_c_mu = -0.02
+hyper_c_sigma = 0.08
+frac_sig_rhMpc = 0.07
+
+[sample_3]
+tracer_type = sn
+Nt = 55
+alpha = 1.4
+a_tripp = 0.140
+b_tripp = 2.78
+M_SN =  -18.558
+sigma_SN = 0.082
+sigma_m = 0.04
+sigma_stretch = 0.17
+sigma_c = 0.04
+hyper_stretch_mu = -0.04
+hyper_stretch_sigma = 1.23
+hyper_c_mu = -0.02
+hyper_c_sigma = 0.08
+frac_sig_rhMpc = 0.07