Generate mock data from borg, create MB data and prepare likelihood

scripts/run_borg.sh

@@ -0,0 +1,34 @@
+#!/bin/sh
+
+# Modules
+module purge
+module restore myborg
+module load cuda/12.3
+
+# Environment
+source /home/bartlett/.bashrc
+source /home/bartlett/anaconda3/etc/profile.d/conda.sh
+conda deactivate
+conda activate borg_env
+
+# Kill job if there are any errors
+set -e
+
+# Path variables
+BORG=/home/bartlett/anaconda3/envs/borg_env/bin/hades_python
+RUN_DIR=/data101/bartlett/fsigma8/borg_velocity/basic_run
+
+mkdir -p $RUN_DIR
+cd $RUN_DIR
+
+# Create a custom file descriptor (3) for tracing
+exec 3>$RUN_DIR/trace_file.txt
+
+# Redirect trace output to the custom file descriptor
+BASH_XTRACEFD="3"
+set -x
+
+# Just ICs
+INI_FILE=/home/bartlett/fsigma8/borg_velocity/conf/basic_ini.ini
+cp $INI_FILE basic_ini.ini
+$BORG INIT basic_ini.ini