Add much more flexible argument handling
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@ -18,7 +18,7 @@ arguments:
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type: int_tuple
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type: int_tuple
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help: 'spacing between crops. Default is the crop size. Comma-sep. list of 1 or d integers'
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help: 'spacing between crops. Default is the crop size. Comma-sep. list of 1 or d integers'
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- 'in-pad':
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- 'in-pad':
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'pad': 0
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pad: 0
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type: int_tuple
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type: int_tuple
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help: 'size to pad the input data beyond the crop size, assuming periodic boundary condition. Comma-sep. list of 1, d, or dx2 integers, to pad equally along all axes, symmetrically on each, or by the specified size on every boundary, respectively'
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help: 'size to pad the input data beyond the crop size, assuming periodic boundary condition. Comma-sep. list of 1, d, or dx2 integers, to pad equally along all axes, symmetrically on each, or by the specified size on every boundary, respectively'
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- 'tgt-pad':
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- 'tgt-pad':
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@ -1,17 +1,53 @@
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from .args import get_args
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from .args import get_args
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from . import train
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from . import train
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from . import test
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from . import test
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import click
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import os
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import yaml
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try:
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from yaml import CLoader as Loader
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except ImportError:
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from yaml import Loader
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import importlib.resources
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def main():
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def _load_resource_file(resource_path):
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package = importlib.import_module('map2map') # Import the package
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with importlib.resources.path('map2map', resource_path) as path:
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return path.read_text() # Read the file and return its content
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def str_list(s):
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return s.split(',')
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def m2m_options(f):
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common_args = _load_resource_file('common_args.yaml')
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for arg in common_args['arguments']:
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argopt = common_args[arg]
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if 'type' in argopt:
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argopt['type'] = eval(argopt['type'])
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f = click.option(f'--{arg}', **argopt)(f)
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else:
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f = click.option(f'--{arg}', **argopt)(f)
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return f
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@click.group()
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@click.option("--config", type=click.Path())
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@click.pass_context
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def main(ctx, config):
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if os.path.exists(config):
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with open(config, 'r') as f:
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config = yaml.load(f.read(), Loader=Loader)
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ctx.default_map = config
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@main.command()
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@m2m_options
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def train(**kwargs):
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args = get_args()
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args = get_args()
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if args.mode == 'train':
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train.node_worker(args)
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train.node_worker(args)
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elif args.mode == 'test':
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@main.command()
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@m2m_options
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def test():
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test.test(args)
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test.test(args)
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if __name__ == '__main__':
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main()
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@ -17,7 +17,8 @@ dependencies = [
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'numpy',
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'numpy',
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'scipy',
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'scipy',
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'matplotlib',
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'matplotlib',
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'tensorboard']
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'tensorboard',
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'click']
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authors = [
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authors = [
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{name = "Yin Li", email = "eelregit@gmail.com"},
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{name = "Yin Li", email = "eelregit@gmail.com"},
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@ -29,7 +30,7 @@ maintainers = [
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]
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]
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[project.scripts]
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[project.scripts]
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m2m = "map2map:main"
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m2m = "map2map:main.main"
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[project.urls]
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[project.urls]
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#Homepage = "https://example.com"
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#Homepage = "https://example.com"
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