Change VNet based on experiment on displacement
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@ -1,5 +1,5 @@
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from .unet import UNet
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from .vnet import VNet, VNetFat
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from .vnet import VNet
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from .patchgan import PatchGAN, PatchGAN42
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from .narrow import narrow_by, narrow_cast, narrow_like
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@ -7,8 +7,6 @@ from .resample import resample, Resampler
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from .lag2eul import Lag2Eul
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from .lag2eul import Lag2Eul
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from .dice import DiceLoss, dice_loss
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from .adversary import adv_model_wrapper, adv_criterion_wrapper
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@ -6,22 +6,37 @@ from .narrow import narrow_like
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class UNet(nn.Module):
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def __init__(self, in_chan, out_chan, **kwargs):
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def __init__(self, in_chan, out_chan, bypass=None, **kwargs):
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"""U-Net like network
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Note:
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Global bypass connection adding the input to the output (similar to
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COLA for displacement input and output) from Alvaro Sanchez Gonzalez.
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Enabled by default when in_chan equals out_chan
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Global bypass, under additive symmetry, effectively obviates --aug-add
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"""
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super().__init__()
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self.conv_l0 = ConvBlock(in_chan, 64, seq='CAC')
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self.down_l0 = ConvBlock(64, seq='BADBA')
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self.conv_l1 = ConvBlock(64, seq='CBAC')
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self.down_l1 = ConvBlock(64, seq='BADBA')
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self.conv_l0 = ConvBlock(in_chan, 64, seq='CACBA')
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self.down_l0 = ConvBlock(64, seq='DBA')
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self.conv_l1 = ConvBlock(64, seq='CBACBA')
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self.down_l1 = ConvBlock(64, seq='DBA')
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self.conv_c = ConvBlock(64, seq='CBAC')
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self.conv_c = ConvBlock(64, seq='CBACBA')
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self.up_r1 = ConvBlock(64, seq='BAUBA')
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self.conv_r1 = ConvBlock(128, 64, seq='CBAC')
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self.up_r0 = ConvBlock(64, seq='BAUBA')
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self.up_r1 = ConvBlock(64, seq='UBA')
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self.conv_r1 = ConvBlock(128, 64, seq='CBACBA')
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self.up_r0 = ConvBlock(64, seq='UBA')
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self.conv_r0 = ConvBlock(128, out_chan, seq='CAC')
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self.bypass = in_chan == out_chan
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def forward(self, x):
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if self.bypass:
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x0 = x
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y0 = self.conv_l0(x)
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x = self.down_l0(y0)
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@ -42,4 +57,8 @@ class UNet(nn.Module):
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del y0
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x = self.conv_r0(x)
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if self.bypass:
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x0 = narrow_like(x0, x)
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x += x0
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return x
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@ -6,77 +6,41 @@ from .narrow import narrow_like
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class VNet(nn.Module):
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def __init__(self, in_chan, out_chan, **kwargs):
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def __init__(self, in_chan, out_chan, bypass=None, **kwargs):
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"""V-Net like network
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Note:
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Global bypass connection adding the input to the output (similar to
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COLA for displacement input and output) from Alvaro Sanchez Gonzalez.
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Enabled by default when in_chan equals out_chan
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Global bypass, under additive symmetry, effectively obviates --aug-add
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Non-identity skip connection in residual blocks
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"""
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super().__init__()
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self.conv_l0 = ResBlock(in_chan, 64, seq='CAC')
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self.down_l0 = ConvBlock(64, seq='BADBA')
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self.conv_l1 = ResBlock(64, seq='CBAC')
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self.down_l1 = ConvBlock(64, seq='BADBA')
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self.conv_c = ResBlock(64, seq='CBAC')
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self.up_r1 = ConvBlock(64, seq='BAUBA')
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self.conv_r1 = ResBlock(128, 64, seq='CBAC')
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self.up_r0 = ConvBlock(64, seq='BAUBA')
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self.conv_r0 = ResBlock(128, out_chan, seq='CAC')
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def forward(self, x):
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y0 = self.conv_l0(x)
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x = self.down_l0(y0)
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y1 = self.conv_l1(x)
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x = self.down_l1(y1)
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x = self.conv_c(x)
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x = self.up_r1(x)
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y1 = narrow_like(y1, x)
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x = torch.cat([y1, x], dim=1)
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del y1
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x = self.conv_r1(x)
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x = self.up_r0(x)
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y0 = narrow_like(y0, x)
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x = torch.cat([y0, x], dim=1)
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del y0
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x = self.conv_r0(x)
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return x
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class VNetFat(nn.Module):
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def __init__(self, in_chan, out_chan, **kwargs):
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super().__init__()
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self.conv_l0 = nn.Sequential(
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ResBlock(in_chan, 64, seq='CACBA'),
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ResBlock(64, seq='CBACBA'),
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)
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# activate non-identity skip connection in residual block
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# by explicitly setting out_chan
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self.conv_l0 = ResBlock(in_chan, 64, seq='CACBA')
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self.down_l0 = ConvBlock(64, seq='DBA')
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self.conv_l1 = nn.Sequential(
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ResBlock(64, seq='CBACBA'),
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ResBlock(64, seq='CBACBA'),
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) # FIXME: test CBACBA+DBA vs CBAC+BADBA
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self.conv_l1 = ResBlock(64, 64, seq='CBACBA')
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self.down_l1 = ConvBlock(64, seq='DBA')
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self.conv_c = nn.Sequential(
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ResBlock(64, seq='CBACBA'),
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ResBlock(64, seq='CBACBA'),
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)
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self.conv_c = ResBlock(64, 64, seq='CBACBA')
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self.up_r1 = ConvBlock(64, seq='UBA')
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self.conv_r1 = nn.Sequential(
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ResBlock(128, seq='CBACBA'),
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ResBlock(128, seq='CBACBA'),
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)
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self.up_r0 = ConvBlock(128, 64, seq='UBA')
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self.conv_r0 = nn.Sequential(
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ResBlock(128, seq='CBACBA'),
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ResBlock(128, out_chan, seq='CAC'),
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)
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self.conv_r1 = ResBlock(128, 64, seq='CBACBA')
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self.up_r0 = ConvBlock(64, seq='UBA')
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self.conv_r0 = ResBlock(128, out_chan, seq='CAC')
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self.bypass = in_chan == out_chan
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def forward(self, x):
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if self.bypass:
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x0 = x
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y0 = self.conv_l0(x)
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x = self.down_l0(y0)
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@ -97,4 +61,8 @@ class VNetFat(nn.Module):
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del y0
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x = self.conv_r0(x)
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if self.bypass:
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x0 = narrow_like(x0, x)
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x += x0
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return x
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