csiborgtools/scripts/match_overlap_all.py
Richard Stiskalek e972f8e3f2
Add pynbody and other support (#92)
* Simplify box units

* Move old scripts

* Add printing

* Update readers

* Disable boundscheck

* Add new ordering

* Clean up imports

* Enforce dtype and add mass to quijote

* Simplify print statements

* Fix little typos

* Fix key bug

* Bug fixing

* Delete boring comments

* Improve ultimate clumps for PHEW

* Delete boring comments

* Add basic reading

* Remove 0th index HID

* Add flipping of X and Z

* Updates to halo catalogues

* Add ordered caching

* Fix flipping

* Add new flags

* Fix PHEW empty clumps

* Stop over-wrriting

* Little improvements to angular neighbours

* Add catalogue masking

* Change if-else statements

* Cache only filtered data

* Add PHEW cats

* Add comments

* Sort imports

* Get Quijote workign

* Docs

* Add HMF calculation

* Move to old

* Fix angular

* Add great circle distance

* Update imports

* Update impotrts

* Update docs

* Remove unused import

* Fix a quick bug

* Update compatibility

* Rename files

* Renaming

* Improve compatiblity

* Rename snapsht

* Fix snapshot bug

* Update interface

* Finish updating interface

* Update all paths

* Add old scripts

* Add basic halo

* Update imports

* Improve snapshot processing

* Update ordering

* Fix how CM positions accessed

* Add merger paths

* Add imports

* Add merger reading

* Add making a merger tree

* Add a basic merger tree reader

* Add imports

* Add main branch walking + comments + debuggin

* Get tree running

* Add working merger tree walking along main branch

* Add units conversion for merger data

* Add hid_to_array_index

* Update merger tree

* Add mergertree mass to PHEWcat

* Edit comments

* Add this to track changes...

* Fix a little bug

* Add mergertree mass

* Add cache clearing

* Improve summing substructure code

* Littbe bug

* Little updates to the merger tree reader

* Update .giignore

* Add box selection

* Add optional deletingf of a group

* add to keep track of changes

* Update changes

* Remove

* Add manual tracker

* Fix bug

* Add m200c_to_r200c

* Add manual halo tracking

* Remove skipped snapshots

* update cosmo params to match csiborg

* remove old comments

* Add SDSSxALFALFA

* Fix bugs

* Rename

* Edit paths

* Updates

* Add comments

* Add comment

* Add hour conversion

* Add imports

* Add new observation class

* Add selection

* Add imports

* Fix small bug

* Add field copying for safety

* Add matching to survey without masking

* Add P(k) calculation

* Add nb

* Edit comment

* Move files

* Remove merger import

* Edit setup.yp

* Fix typo

* Edit import warnigns

* update nb

* Update README

* Update README

* Update README

* Add skeleton

* Add skeleton
2023-12-07 14:23:32 +00:00

88 lines
3.4 KiB
Python

# This program is free software; you can redistribute it and/or modify it
# under the terms of the GNU General Public License as published by the
# Free Software Foundation; either version 3 of the License, or (at your
# option) any later version.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General
# Public License for more details.
#
# You should have received a copy of the GNU General Public License along
# with this program; if not, write to the Free Software Foundation, Inc.,
# 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
"""A script to match all IC pairs of a simulation."""
import warnings
from argparse import ArgumentParser
from distutils.util import strtobool
from itertools import combinations
from random import Random
from mpi4py import MPI
from taskmaster import work_delegation
import csiborgtools
from match_singlematch import pair_match, pair_match_max
def get_combs(simname):
"""
Get the list of all pairs of IC indices and permute them with a fixed
seed.
"""
paths = csiborgtools.read.Paths(**csiborgtools.paths_glamdring)
combs = list(combinations(paths.get_ics(simname), 2))
Random(42).shuffle(combs)
return combs
def main(comb, kind, simname, min_logmass, sigma, mult, verbose):
"""
Match a pair of simulations.
"""
nsim0, nsimx = comb
if kind == "overlap":
pair_match(nsim0, nsimx, simname, min_logmass, sigma, verbose)
elif args.kind == "max":
pair_match_max(nsim0, nsimx, simname, min_logmass, mult, verbose)
else:
raise ValueError(f"Unknown matching kind: `{kind}`.")
if __name__ == "__main__":
parser = ArgumentParser()
parser.add_argument("--kind", type=str, required=True,
choices=["overlap", "max"], help="Kind of matching.")
parser.add_argument("--simname", type=str, required=True,
help="Simulation name.",
choices=["csiborg", "quijote"])
parser.add_argument("--nsim0", type=int, default=None,
help="Reference IC for Max's matching method.")
parser.add_argument("--min_logmass", type=float, required=True,
help="Minimum log halo mass.")
parser.add_argument("--sigma", type=float, default=0,
help="Smoothing scale in number of grid cells.")
parser.add_argument("--mult", type=float, default=5,
help="Search radius multiplier for Max's method.")
parser.add_argument("--verbose", type=lambda x: bool(strtobool(x)),
default=False, help="Verbosity flag.")
args = parser.parse_args()
if args.kind == "overlap":
combs = get_combs(args.simname)
else:
paths = csiborgtools.read.Paths(**csiborgtools.paths_glamdring)
combs = [(args.nsim0, nsimx) for nsimx in paths.get_ics(args.simname)
if nsimx != args.nsim0]
def _main(comb):
with warnings.catch_warnings():
warnings.filterwarnings("ignore",
"invalid value encountered in cast",
RuntimeWarning)
main(comb, args.kind, args.simname, args.min_logmass, args.sigma,
args.mult, args.verbose)
work_delegation(_main, combs, MPI.COMM_WORLD)