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csiborgtools/notebooks/field_sample.ipynb
Richard Stiskalek 9e4b34f579
Overlap fixing and more (#107) 
* Update README

* Update density field reader

* Update name of SDSSxALFAFA

* Fix quick bug

* Add little fixes

* Update README

* Put back fit_init

* Add paths to initial snapshots

* Add export

* Remove some choices

* Edit README

* Add Jens' comments

* Organize imports

* Rename snapshot

* Add additional print statement

* Add paths to initial snapshots

* Add masses to the initial files

* Add normalization

* Edit README

* Update README

* Fix bug in CSiBORG1 so that does not read fof_00001

* Edit README

* Edit README

* Overwrite comments

* Add paths to init lag

* Fix Quijote path

* Add lagpatch

* Edit submits

* Update README

* Fix numpy int problem

* Update README

* Add a flag to keep the snapshots open when fitting

* Add a flag to keep snapshots open

* Comment out some path issue

* Keep snapshots open

* Access directly snasphot

* Add lagpatch for CSiBORG2

* Add treatment of x-z coordinates flipping

* Add radial velocity field loader

* Update README

* Add lagpatch to Quijote

* Fix typo

* Add setter

* Fix typo

* Update README

* Add output halo cat as ASCII

* Add import

* Add halo plot

* Update README

* Add evaluating field at radial distanfe

* Add field shell evaluation

* Add enclosed mass computation

* Add BORG2 import

* Add BORG boxsize

* Add BORG paths

* Edit run

* Add BORG2 overdensity field

* Add bulk flow clauclation

* Update README

* Add new plots

* Add nbs

* Edit paper

* Update plotting

* Fix overlap paths to contain simname

* Add normalization of positions

* Add default paths to CSiBORG1

* Add overlap path simname

* Fix little things

* Add CSiBORG2 catalogue

* Update README

* Add import

* Add TNG density field constructor

* Add TNG density

* Add draft of calculating BORG ACL

* Fix bug

* Add ACL of enclosed density

* Add nmean acl

* Add galaxy bias calculation

* Add BORG acl notebook

* Add enclosed mass calculation

* Add TNG300-1 dir

* Add TNG300 and BORG1 dir

* Update nb
2024-01-30 16:14:07 +00:00

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In [1]:
import sys
import numpy as np
import matplotlib.pyplot as plt

sys.path.append("../")
import csiborgtools

%matplotlib widget 
%load_ext autoreload
%autoreload 2
In [2]:
paths = csiborgtools.read.CSiBORGPaths(**csiborgtools.paths_glamdring)
nsim0 = 7444
nsimx = 7444 + 24
nsnap0 = max(paths.get_snapshots(nsim0))
nsnapx = max(paths.get_snapshots(nsimx))
overlapper  = csiborgtools.match.ParticleOverlap()
In [3]:
halo0_archive = np.load(paths.split_path(nsnap0, nsim0))
halox_archive = np.load(paths.split_path(nsnapx, nsimx))
In [13]:
# delta_bckg = overlapper.make_bckg_delta(halo0_archive, verbose=True)
# delta_bckg = overlapper.make_bckg_delta(halox_archive, delta=delta_bckg, verbose=True)
# np.save("./bckg_{}_{}.npy".format(nsim0, nsimx), delta_bckg)

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