mirror of
https://github.com/Richard-Sti/csiborgtools.git
synced 2024-12-22 22:28:03 +00:00
63ab3548b4
* Rewrite doc * add kNN * edit loading of samples with no init * Add verbosity flag * add KNN submission script * do not make peaked cdf by default * Add submit script * stop ignore sh * Add mass thresholding * Edit gitignore * edits * Space points in logspace * Calculate for all ICs * Update TODO * Add dtype support * Update readme * Update nb
46 lines
1.7 KiB
Bash
46 lines
1.7 KiB
Bash
#!/bin/bash -l
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echo =========================================================
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echo Job submitted date = Fri Mar 31 16:17:57 BST 2023
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date_start=`date +%s`
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echo $SLURM_JOB_NUM_NODES nodes \( $SMP processes per node \)
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echo $SLURM_JOB_NUM_NODES hosts used: $SLURM_JOB_NODELIST
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echo Job output begins
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echo -----------------
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echo
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#hostname
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# Need to set the max locked memory very high otherwise IB can't allocate enough and fails with "UCX ERROR Failed to allocate memory pool chunk: Input/output error"
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ulimit -l unlimited
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# To allow mvapich to run ok
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export MV2_SMP_USE_CMA=0
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#which mpirun
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export OMP_NUM_THEADS=1
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/usr/local/shared/slurm/bin/srun -u -n 5 --mpi=pmi2 --mem-per-cpu=7168 nice -n 10 /mnt/zfsusers/rstiskalek/csiborgtools/venv_galomatch/bin/python run_knn.py --rmin 0.05 --rmax 50 --nsamples 100000 --neval 10000
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# If we've been checkpointed
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#if [ -n "${DMTCP_CHECKPOINT_DIR}" ]; then
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if [ -d "${DMTCP_CHECKPOINT_DIR}" ]; then
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# echo -n "Job was checkpointed at "
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# date
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# echo
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sleep 1
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# fi
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echo -n
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else
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echo ---------------
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echo Job output ends
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date_end=`date +%s`
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seconds=$((date_end-date_start))
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minutes=$((seconds/60))
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seconds=$((seconds-60*minutes))
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hours=$((minutes/60))
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minutes=$((minutes-60*hours))
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echo =========================================================
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echo PBS job: finished date = `date`
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echo Total run time : $hours Hours $minutes Minutes $seconds Seconds
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echo =========================================================
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fi
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if [ ${SLURM_NTASKS} -eq 1 ]; then
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rm -f $fname
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fi
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