mirror of
https://github.com/Richard-Sti/csiborgtools.git
synced 2024-12-23 02:08:03 +00:00
e972f8e3f2
* Simplify box units * Move old scripts * Add printing * Update readers * Disable boundscheck * Add new ordering * Clean up imports * Enforce dtype and add mass to quijote * Simplify print statements * Fix little typos * Fix key bug * Bug fixing * Delete boring comments * Improve ultimate clumps for PHEW * Delete boring comments * Add basic reading * Remove 0th index HID * Add flipping of X and Z * Updates to halo catalogues * Add ordered caching * Fix flipping * Add new flags * Fix PHEW empty clumps * Stop over-wrriting * Little improvements to angular neighbours * Add catalogue masking * Change if-else statements * Cache only filtered data * Add PHEW cats * Add comments * Sort imports * Get Quijote workign * Docs * Add HMF calculation * Move to old * Fix angular * Add great circle distance * Update imports * Update impotrts * Update docs * Remove unused import * Fix a quick bug * Update compatibility * Rename files * Renaming * Improve compatiblity * Rename snapsht * Fix snapshot bug * Update interface * Finish updating interface * Update all paths * Add old scripts * Add basic halo * Update imports * Improve snapshot processing * Update ordering * Fix how CM positions accessed * Add merger paths * Add imports * Add merger reading * Add making a merger tree * Add a basic merger tree reader * Add imports * Add main branch walking + comments + debuggin * Get tree running * Add working merger tree walking along main branch * Add units conversion for merger data * Add hid_to_array_index * Update merger tree * Add mergertree mass to PHEWcat * Edit comments * Add this to track changes... * Fix a little bug * Add mergertree mass * Add cache clearing * Improve summing substructure code * Littbe bug * Little updates to the merger tree reader * Update .giignore * Add box selection * Add optional deletingf of a group * add to keep track of changes * Update changes * Remove * Add manual tracker * Fix bug * Add m200c_to_r200c * Add manual halo tracking * Remove skipped snapshots * update cosmo params to match csiborg * remove old comments * Add SDSSxALFALFA * Fix bugs * Rename * Edit paths * Updates * Add comments * Add comment * Add hour conversion * Add imports * Add new observation class * Add selection * Add imports * Fix small bug * Add field copying for safety * Add matching to survey without masking * Add P(k) calculation * Add nb * Edit comment * Move files * Remove merger import * Edit setup.yp * Fix typo * Edit import warnigns * update nb * Update README * Update README * Update README * Add skeleton * Add skeleton
108 lines
4.4 KiB
Python
108 lines
4.4 KiB
Python
# Copyright (C) 2022 Richard Stiskalek
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# This program is free software; you can redistribute it and/or modify it
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# under the terms of the GNU General Public License as published by the
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# Free Software Foundation; either version 3 of the License, or (at your
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# option) any later version.
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#
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# This program is distributed in the hope that it will be useful, but
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# WITHOUT ANY WARRANTY; without even the implied warranty of
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# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General
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# Public License for more details.
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#
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# You should have received a copy of the GNU General Public License along
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# with this program; if not, write to the Free Software Foundation, Inc.,
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# 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
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"""
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Script to calculate the HMF for CSIBORG and Quijote haloes.
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"""
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from argparse import ArgumentParser
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from datetime import datetime
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from distutils.util import strtobool
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import numpy
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from mpi4py import MPI
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from taskmaster import work_delegation
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from utils import get_nsims
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try:
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import csiborgtools
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except ModuleNotFoundError:
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import sys
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sys.path.append("../")
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import csiborgtools
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def get_counts(nsim, bins, paths, parser_args):
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"""
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Calculate and save the number of haloes in each mass bin.
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"""
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simname = parser_args.simname
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paths = csiborgtools.read.Paths(**csiborgtools.paths_glamdring)
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bounds = {"dist": (0, parser_args.Rmax)}
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if simname == "csiborg":
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cat = csiborgtools.read.CSiBORGHaloCatalogue(
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nsim, paths, bounds=bounds, load_fitted=False, load_initial=False)
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logmass = numpy.log10(cat["fof_totpartmass"])
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counts = csiborgtools.number_counts(logmass, bins)
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elif simname == "quijote":
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cat0 = csiborgtools.read.QuijoteHaloCatalogue(
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nsim, paths, nsnap=4, load_fitted=False, load_initial=False)
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nmax = int(cat0.box.boxsize // (2 * parser_args.Rmax))**3
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counts = numpy.full((nmax, len(bins) - 1), numpy.nan,
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dtype=numpy.float32)
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for nobs in range(nmax):
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cat = cat0.pick_fiducial_observer(nobs, rmax=parser_args.Rmax)
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logmass = numpy.log10(cat["group_mass"])
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counts[nobs, :] = csiborgtools.number_counts(logmass, bins)
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elif simname == "quijote_full":
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cat = csiborgtools.read.QuijoteHaloCatalogue(
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nsim, paths, nsnap=4, load_fitted=False, load_initial=False,
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load_backup=parser_args.from_quijote_backup)
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logmass = numpy.log10(cat["group_mass"])
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counts = csiborgtools.number_counts(logmass, bins)
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else:
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raise ValueError(f"Unknown simulation name `{simname}`.")
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fout = paths.halo_counts(simname, nsim, parser_args.from_quijote_backup)
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if parser_args.verbose:
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print(f"{datetime.now()}: saving halo counts to `{fout}`.")
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numpy.savez(fout, counts=counts, bins=bins, rmax=parser_args.Rmax)
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if __name__ == "__main__":
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parser = ArgumentParser()
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parser.add_argument("--simname", type=str,
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choices=["csiborg", "quijote", "quijote_full"],
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help="Simulation name.")
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parser.add_argument("--nsims", type=int, nargs="+", default=None,
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help="Indices of simulations to cross. If `-1` all .")
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parser.add_argument(
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"--Rmax", type=float, default=155,
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help="High-res region radius in Mpc / h. Ignored for `quijote_full`.")
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parser.add_argument("--from_quijote_backup",
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type=lambda x: bool(strtobool(x)), default=False,
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help="Flag to indicate Quijote backup data.")
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parser.add_argument("--lims", type=float, nargs="+", default=[11., 16.],
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help="Mass limits in Msun / h.")
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parser.add_argument("--bw", type=float, default=0.2,
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help="Bin width in dex.")
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parser.add_argument("--verbose", type=lambda x: bool(strtobool(x)),
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default=False, help="Verbosity flag.")
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parser_args = parser.parse_args()
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paths = csiborgtools.read.Paths(**csiborgtools.paths_glamdring)
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nsims = get_nsims(parser_args, paths)
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if len(parser_args.lims) != 2:
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raise ValueError("Mass limits must be a pair of floats.")
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bins = numpy.arange(*parser_args.lims, parser_args.bw, dtype=numpy.float32)
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def do_work(nsim):
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get_counts(nsim, bins, paths, parser_args)
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work_delegation(do_work, nsims, MPI.COMM_WORLD)
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