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CSiBORG analysis tools.
56e39a8b1d
* Store indices as f32 * Fix init sorting * Organise imports * Rename pathing * Add particle loading * Improve particle reading * Add h5py reader * edit particle path * Update particles loading * update particles loading * Fix particle dumping * Add init fitting * Fix bug due to insufficient precision * Add commnet * Add comment * Add clumps catalogue to halo cat * Add comment * Make sure PIDS never forced to float32 * fix pid reading * fix pid reading * Update matching to work with new arrays * Stop using cubical sub boxes, turn off nshift if no smoothing * Improve caching * Move function definitions * Simplify calculation * Add import * Small updates to the halo * Simplify calculation * Simplify looping calculation * fix tonew * Add initial data * Add skip condition * Add unit conversion * Add loading background in batches * Rename mmain index * Switch overlaps to h5 * Add finite lagpatch check * fix column name * Add verbosity flags * Save halo IDs instead. * Switch back to npz * Delte nbs * Reduce size of the box * Load correct bckg of halos being matched * Remove verbosity * verbosity edits * Change lower thresholds |
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README.md | ||
setup.py |
CSiBORG Analysis
Project Overlap
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Clean up the kNN paths in the summary.
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Clean up the 2PCF paths in the summary.
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Update the clustering scripts to work with clumps instead.
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Sort out the splitting of individual clumps.
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Update the fitting scripts to work for clumps and parent halos.
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When calculating the overlap now check whether the halos have any particles, but that should already be the case otherwise its initial CM will not be defined.
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Calculated fitted quantities for clumps and parent halos and add them to the catalogues.
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Update overlap scripts to work with summed parent halos.
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Calculate the overlap between all 101 IC realisations on DiRAC.
Project Clustering
Longterm
- Add uncertainty to the kNN-CDF autocorrelation?
- Add reading halo catalogues at higher redshifts.
April 9 2023 Sunday
- Add normalised marks calculation.
- Add normalised marks to the submission scripts.
- Verify analytical formula for the kNN of a uniform field.
- For the cross-correlation try making the second field randoms.
- Clean up the reader code.
- Correct the crossing script.
- Get started with the 2PCF calculation.
Project Environmental Dependence
- Add gradient and Hessian of the overdensity field.