# Copyright (C) 2022 Richard Stiskalek # This program is free software; you can redistribute it and/or modify it # under the terms of the GNU General Public License as published by the # Free Software Foundation; either version 3 of the License, or (at your # option) any later version. # # This program is distributed in the hope that it will be useful, but # WITHOUT ANY WARRANTY; without even the implied warranty of # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General # Public License for more details. # # You should have received a copy of the GNU General Public License along # with this program; if not, write to the Free Software Foundation, Inc., # 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA. """ A script to calculate the KNN-CDF for a set of halo catalogues. """ from argparse import ArgumentParser from datetime import datetime from distutils.util import strtobool import joblib import numpy import yaml from mpi4py import MPI from sklearn.neighbors import NearestNeighbors from taskmaster import work_delegation try: import csiborgtools except ModuleNotFoundError: import sys sys.path.append("../") import csiborgtools from utils import open_catalogues def do_auto(args, config, cats, nsim, paths): """ Calculate the kNN-CDF single catalogue auto-correlation. Parameters ---------- args : argparse.Namespace Command line arguments. config : dict Configuration dictionary. cats : dict Dictionary of halo catalogues. Keys are simulation indices, values are the catalogues. nsim : int Simulation index. paths : csiborgtools.paths.Paths Paths object. Returns ------- None """ rvs_gen = csiborgtools.clustering.RVSinsphere(args.Rmax) knncdf = csiborgtools.clustering.kNN_1DCDF() cat = cats[nsim] knn = cat.knn(in_initial=False) rs, cdf = knncdf( knn, rvs_gen=rvs_gen, nneighbours=config["nneighbours"], rmin=config["rmin"], rmax=config["rmax"], nsamples=int(config["nsamples"]), neval=int(config["neval"]), batch_size=int(config["batch_size"]), random_state=config["seed"]) totvol = (4 / 3) * numpy.pi * args.Rmax ** 3 fout = paths.knnauto(args.simname, args.run, nsim) if args.verbose: print(f"Saving output to `{fout}`.") joblib.dump({"rs": rs, "cdf": cdf, "ndensity": len(cat) / totvol}, fout) def do_cross_rand(args, config, cats, nsim, paths): """ Calculate the kNN-CDF cross catalogue random correlation. Parameters ---------- args : argparse.Namespace Command line arguments. config : dict Configuration dictionary. cats : dict Dictionary of halo catalogues. Keys are simulation indices, values are the catalogues. nsim : int Simulation index. paths : csiborgtools.paths.Paths Paths object. Returns ------- None """ rvs_gen = csiborgtools.clustering.RVSinsphere(args.Rmax) cat = cats[nsim] knn1 = cat.knn(in_initial=False) knn2 = NearestNeighbors() pos2 = rvs_gen(len(cat).shape[0]) knn2.fit(pos2) knncdf = csiborgtools.clustering.kNN_1DCDF() rs, cdf0, cdf1, joint_cdf = knncdf.joint( knn1, knn2, rvs_gen=rvs_gen, nneighbours=int(config["nneighbours"]), rmin=config["rmin"], rmax=config["rmax"], nsamples=int(config["nsamples"]), neval=int(config["neval"]), batch_size=int(config["batch_size"]), random_state=config["seed"]) corr = knncdf.joint_to_corr(cdf0, cdf1, joint_cdf) fout = paths.knnauto(args.simname, args.run, nsim) if args.verbose: print(f"Saving output to `{fout}`.", flush=True) joblib.dump({"rs": rs, "corr": corr}, fout) if __name__ == "__main__": parser = ArgumentParser() parser.add_argument("--run", type=str, help="Run name.") parser.add_argument("--simname", type=str, choices=["csiborg", "quijote"], help="Simulation name") parser.add_argument("--nsims", type=int, nargs="+", default=None, help="Indices of simulations to cross. If `-1` processes all simulations.") # noqa parser.add_argument("--Rmax", type=float, default=155/0.705, help="High-resolution region radius") # noqa parser.add_argument("--verbose", type=lambda x: bool(strtobool(x)), default=False) args = parser.parse_args() with open("./cluster_knn_auto.yml", "r") as file: config = yaml.safe_load(file) comm = MPI.COMM_WORLD paths = csiborgtools.read.Paths(**csiborgtools.paths_glamdring) cats = open_catalogues(args, config, paths, comm) if args.verbose and comm.Get_rank() == 0: print(f"{datetime.now()}: starting to calculate the kNN statistic.") def do_work(nsim): if "random" in args.run: do_cross_rand(args, config, cats, nsim, paths) else: do_auto(args, config, cats, nsim, paths) nsims = list(cats.keys()) work_delegation(do_work, nsims, comm, master_verbose=args.verbose) comm.Barrier() if comm.Get_rank() == 0: print(f"{datetime.now()}: all finished. Quitting.")