# Copyright (C) 2022 Richard Stiskalek # This program is free software; you can redistribute it and/or modify it # under the terms of the GNU General Public License as published by the # Free Software Foundation; either version 3 of the License, or (at your # option) any later version. # # This program is distributed in the hope that it will be useful, but # WITHOUT ANY WARRANTY; without even the implied warranty of # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General # Public License for more details. # # You should have received a copy of the GNU General Public License along # with this program; if not, write to the Free Software Foundation, Inc., # 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA. """ Script to split particles into smaller files according to their clump membership for faster manipulation. Currently does this for the maximum snapshot of each simulation. Running this will require a lot of memory. """ from os.path import join from mpi4py import MPI from datetime import datetime try: import csiborgtools except ModuleNotFoundError: import sys sys.path.append("../") import csiborgtools import utils # Get MPI things comm = MPI.COMM_WORLD rank = comm.Get_rank() nproc = comm.Get_size() Nsims = csiborgtools.io.get_csiborg_ids("/mnt/extraspace/hdesmond") partcols = ["x", "y", "z", "vx", "vy", "vz", "M", "level"] dumpdir = join(utils.dumpdir, "temp") jobs = csiborgtools.fits.split_jobs(len(Nsims), nproc)[rank] for icount, sim_index in enumerate(jobs): print("{}: rank {} working {} / {} jobs.".format(datetime.now(), rank, icount + 1, len(jobs))) Nsim = Nsims[sim_index] simpath = csiborgtools.io.get_sim_path(Nsim) Nsnap = csiborgtools.io.get_maximum_snapshot(simpath) # Load the clumps, particles' clump IDs and particles. clumps = csiborgtools.io.read_clumps(Nsnap, simpath) particle_clumps = csiborgtools.io.read_clumpid(Nsnap, simpath, verbose=False) particles = csiborgtools.io.read_particle(partcols, Nsnap, simpath, verbose=False) # Drop all particles whose clump index is 0 (not assigned to any halo) particle_clumps, particles = csiborgtools.io.drop_zero_indx( particle_clumps, particles) # Dump it! csiborgtools.fits.dump_split_particles(particles, particle_clumps, clumps, utils.Nsplits, dumpdir, Nsim, Nsnap, verbose=False) print("All finished!")