{ "cells": [ { "cell_type": "code", "execution_count": 160, "id": "5a38ed25", "metadata": { "ExecuteTime": { "end_time": "2022-11-22T09:56:42.956157Z", "start_time": "2022-11-22T09:56:41.999024Z" } }, "outputs": [ { "name": "stdout", "output_type": "stream", "text": [ "The autoreload extension is already loaded. To reload it, use:\n", " %reload_ext autoreload\n" ] } ], "source": [ "import numpy as np\n", "%matplotlib notebook\n", "import matplotlib.pyplot as plt\n", "try:\n", " import csiborgtools\n", "except ModuleNotFoundError:\n", " import sys\n", " sys.path.append(\"../\")\n", " import csiborgtools\n", "import utils\n", "%load_ext autoreload\n", "%autoreload 2\n", "\n", "import joblib\n", "from os.path import join\n", "\n", "from scipy.interpolate import interp1d" ] }, { "cell_type": "code", "execution_count": 163, "id": "fa492543", "metadata": { "ExecuteTime": { "end_time": "2022-11-22T09:57:21.730075Z", "start_time": "2022-11-22T09:57:21.281306Z" } }, "outputs": [ { "data": { "text/plain": [ "'/mnt/extraspace/hdesmond/ramses_out_7636'" ] }, "execution_count": 163, "metadata": {}, "output_type": "execute_result" } ], "source": [ "sim = 7636\n", "\n", "csiborgtools.read.get_sim_path(sim)" ] }, { "cell_type": "code", "execution_count": 162, "id": "95759c3e", "metadata": { "ExecuteTime": { "end_time": "2022-11-22T09:57:00.423419Z", "start_time": "2022-11-22T09:57:00.337146Z" } }, "outputs": [ { "data": { "text/plain": [ "7636" ] }, "execution_count": 162, "metadata": {}, "output_type": "execute_result" } ], "source": [] }, { "cell_type": "code", "execution_count": null, "id": "b3c4c223", "metadata": {}, "outputs": [], "source": [] }, { "cell_type": "code", "execution_count": null, "id": "464b91b3", "metadata": {}, "outputs": [], "source": [] }, { "cell_type": "code", "execution_count": 2, "id": "2c98d50d", "metadata": { "ExecuteTime": { "end_time": "2022-11-21T19:32:19.115273Z", "start_time": "2022-11-21T19:29:12.079733Z" }, "scrolled": true }, "outputs": [ { "name": "stderr", "output_type": "stream", "text": [ "100%|██████████████████████████████████████████████████████████████████████████████████████████████████████████████████| 10/10 [03:06<00:00, 18.69s/it]\n" ] } ], "source": [ "cat = csiborgtools.read.CombinedHaloCatalogue()\n", "# cat = csiborgtools.io.HaloCatalogue(7444, 951)" ] }, { "cell_type": "code", "execution_count": 3, "id": "72f406e5", "metadata": { "ExecuteTime": { "end_time": "2022-11-21T19:35:07.774766Z", "start_time": "2022-11-21T19:35:07.088097Z" } }, "outputs": [], "source": [ "matcher = csiborgtools.match.RealisationsMatcher(cat)" ] }, { "cell_type": "code", "execution_count": 4, "id": "e165bef2", "metadata": { "ExecuteTime": { "end_time": "2022-11-21T19:35:30.136090Z", "start_time": "2022-11-21T19:35:09.690538Z" }, "scrolled": false }, "outputs": [], "source": [ "n = 0\n", "match = matcher.cross_knn_position_single(n, 10)\n", "# x.shape" ] }, { "cell_type": "code", "execution_count": 125, "id": "47c34662", "metadata": { "ExecuteTime": { "end_time": "2022-11-21T20:29:04.785499Z", "start_time": "2022-11-21T20:29:04.046235Z" } }, "outputs": [ { "data": { "application/javascript": [ "/* Put everything inside the global mpl namespace */\n", "/* global mpl */\n", "window.mpl = {};\n", "\n", "mpl.get_websocket_type = function () {\n", " if (typeof WebSocket !== 'undefined') {\n", " return WebSocket;\n", " } else if (typeof MozWebSocket !== 'undefined') {\n", " return MozWebSocket;\n", " } else {\n", " alert(\n", " 'Your browser does not have WebSocket support. ' +\n", " 'Please try Chrome, Safari or Firefox ≥ 6. ' +\n", " 'Firefox 4 and 5 are also supported but you ' +\n", " 'have to enable WebSockets in about:config.'\n", " );\n", " }\n", "};\n", "\n", "mpl.figure = function (figure_id, websocket, ondownload, parent_element) {\n", " this.id = figure_id;\n", "\n", " this.ws = websocket;\n", "\n", " this.supports_binary = this.ws.binaryType !== undefined;\n", "\n", " if (!this.supports_binary) {\n", " var warnings = document.getElementById('mpl-warnings');\n", " if (warnings) {\n", " warnings.style.display = 'block';\n", " warnings.textContent =\n", " 'This browser does not support binary websocket messages. ' +\n", " 'Performance may be slow.';\n", " }\n", " }\n", "\n", " this.imageObj = new Image();\n", "\n", " this.context = undefined;\n", " this.message = undefined;\n", " this.canvas = undefined;\n", " this.rubberband_canvas = undefined;\n", " this.rubberband_context = undefined;\n", " this.format_dropdown = undefined;\n", "\n", " this.image_mode = 'full';\n", "\n", " this.root = document.createElement('div');\n", " this.root.setAttribute('style', 'display: inline-block');\n", " this._root_extra_style(this.root);\n", "\n", " parent_element.appendChild(this.root);\n", "\n", " this._init_header(this);\n", " this._init_canvas(this);\n", " this._init_toolbar(this);\n", "\n", " var fig = this;\n", "\n", " this.waiting = false;\n", "\n", " this.ws.onopen = function () {\n", " fig.send_message('supports_binary', { value: fig.supports_binary });\n", " fig.send_message('send_image_mode', {});\n", " if (fig.ratio !== 1) {\n", " fig.send_message('set_device_pixel_ratio', {\n", " device_pixel_ratio: fig.ratio,\n", " });\n", " }\n", " fig.send_message('refresh', {});\n", " };\n", "\n", " this.imageObj.onload = function () {\n", " if (fig.image_mode === 'full') {\n", " // Full images could contain transparency (where diff images\n", " // almost always do), so we need to clear the canvas so that\n", " // there is no ghosting.\n", " fig.context.clearRect(0, 0, fig.canvas.width, fig.canvas.height);\n", " }\n", " fig.context.drawImage(fig.imageObj, 0, 0);\n", " };\n", "\n", " this.imageObj.onunload = function () {\n", " fig.ws.close();\n", " };\n", "\n", " this.ws.onmessage = this._make_on_message_function(this);\n", "\n", " this.ondownload = ondownload;\n", "};\n", "\n", "mpl.figure.prototype._init_header = function () {\n", " var titlebar = document.createElement('div');\n", " titlebar.classList =\n", " 'ui-dialog-titlebar ui-widget-header ui-corner-all ui-helper-clearfix';\n", " var titletext = document.createElement('div');\n", " titletext.classList = 'ui-dialog-title';\n", " titletext.setAttribute(\n", " 'style',\n", " 'width: 100%; text-align: center; padding: 3px;'\n", " );\n", " titlebar.appendChild(titletext);\n", " this.root.appendChild(titlebar);\n", " this.header = titletext;\n", "};\n", "\n", "mpl.figure.prototype._canvas_extra_style = function (_canvas_div) {};\n", "\n", "mpl.figure.prototype._root_extra_style = function (_canvas_div) {};\n", "\n", "mpl.figure.prototype._init_canvas = function () {\n", " var fig = this;\n", "\n", " var canvas_div = (this.canvas_div = document.createElement('div'));\n", " canvas_div.setAttribute(\n", " 'style',\n", " 'border: 1px solid #ddd;' +\n", " 'box-sizing: content-box;' +\n", " 'clear: both;' +\n", " 'min-height: 1px;' +\n", " 'min-width: 1px;' +\n", " 'outline: 0;' +\n", " 'overflow: hidden;' +\n", " 'position: relative;' +\n", " 'resize: both;'\n", " );\n", "\n", " function on_keyboard_event_closure(name) {\n", " return function (event) {\n", " return fig.key_event(event, name);\n", " };\n", " }\n", "\n", " canvas_div.addEventListener(\n", " 'keydown',\n", " on_keyboard_event_closure('key_press')\n", " );\n", " canvas_div.addEventListener(\n", " 'keyup',\n", " on_keyboard_event_closure('key_release')\n", " );\n", "\n", " this._canvas_extra_style(canvas_div);\n", " this.root.appendChild(canvas_div);\n", "\n", " var canvas = (this.canvas = document.createElement('canvas'));\n", " canvas.classList.add('mpl-canvas');\n", " canvas.setAttribute('style', 'box-sizing: content-box;');\n", "\n", " this.context = canvas.getContext('2d');\n", "\n", " var backingStore =\n", " this.context.backingStorePixelRatio ||\n", " this.context.webkitBackingStorePixelRatio ||\n", " this.context.mozBackingStorePixelRatio ||\n", " this.context.msBackingStorePixelRatio ||\n", " this.context.oBackingStorePixelRatio ||\n", " this.context.backingStorePixelRatio ||\n", " 1;\n", "\n", " this.ratio = (window.devicePixelRatio || 1) / backingStore;\n", "\n", " var rubberband_canvas = (this.rubberband_canvas = document.createElement(\n", " 'canvas'\n", " ));\n", " rubberband_canvas.setAttribute(\n", " 'style',\n", " 'box-sizing: content-box; position: absolute; left: 0; top: 0; z-index: 1;'\n", " );\n", "\n", " // Apply a ponyfill if ResizeObserver is not implemented by browser.\n", " if (this.ResizeObserver === undefined) {\n", " if (window.ResizeObserver !== undefined) {\n", " this.ResizeObserver = window.ResizeObserver;\n", " } else {\n", " var obs = _JSXTOOLS_RESIZE_OBSERVER({});\n", " this.ResizeObserver = obs.ResizeObserver;\n", " }\n", " }\n", "\n", " this.resizeObserverInstance = new this.ResizeObserver(function (entries) {\n", " var nentries = entries.length;\n", " for (var i = 0; i < nentries; i++) {\n", " var entry = entries[i];\n", " var width, height;\n", " if (entry.contentBoxSize) {\n", " if (entry.contentBoxSize instanceof Array) {\n", " // Chrome 84 implements new version of spec.\n", " width = entry.contentBoxSize[0].inlineSize;\n", " height = entry.contentBoxSize[0].blockSize;\n", " } else {\n", " // Firefox implements old version of spec.\n", " width = entry.contentBoxSize.inlineSize;\n", " height = entry.contentBoxSize.blockSize;\n", " }\n", " } else {\n", " // Chrome <84 implements even older version of spec.\n", " width = entry.contentRect.width;\n", " height = entry.contentRect.height;\n", " }\n", "\n", " // Keep the size of the canvas and rubber band canvas in sync with\n", " // the canvas container.\n", " if (entry.devicePixelContentBoxSize) {\n", " // Chrome 84 implements new version of spec.\n", " canvas.setAttribute(\n", " 'width',\n", " entry.devicePixelContentBoxSize[0].inlineSize\n", " );\n", " canvas.setAttribute(\n", " 'height',\n", " entry.devicePixelContentBoxSize[0].blockSize\n", " );\n", " } else {\n", " canvas.setAttribute('width', width * fig.ratio);\n", " canvas.setAttribute('height', height * fig.ratio);\n", " }\n", " canvas.setAttribute(\n", " 'style',\n", " 'width: ' + width + 'px; height: ' + height + 'px;'\n", " );\n", "\n", " rubberband_canvas.setAttribute('width', width);\n", " rubberband_canvas.setAttribute('height', height);\n", "\n", " // And update the size in Python. We ignore the initial 0/0 size\n", " // that occurs as the element is placed into the DOM, which should\n", " // otherwise not happen due to the minimum size styling.\n", " if (fig.ws.readyState == 1 && width != 0 && height != 0) {\n", " fig.request_resize(width, height);\n", " }\n", " }\n", " });\n", " this.resizeObserverInstance.observe(canvas_div);\n", "\n", " function on_mouse_event_closure(name) {\n", " return function (event) {\n", " return fig.mouse_event(event, name);\n", " };\n", " }\n", "\n", " rubberband_canvas.addEventListener(\n", " 'mousedown',\n", " on_mouse_event_closure('button_press')\n", " );\n", " rubberband_canvas.addEventListener(\n", " 'mouseup',\n", " on_mouse_event_closure('button_release')\n", " );\n", " rubberband_canvas.addEventListener(\n", " 'dblclick',\n", " on_mouse_event_closure('dblclick')\n", " );\n", " // Throttle sequential mouse events to 1 every 20ms.\n", " rubberband_canvas.addEventListener(\n", " 'mousemove',\n", " on_mouse_event_closure('motion_notify')\n", " );\n", "\n", " rubberband_canvas.addEventListener(\n", " 'mouseenter',\n", " on_mouse_event_closure('figure_enter')\n", " );\n", " rubberband_canvas.addEventListener(\n", " 'mouseleave',\n", " on_mouse_event_closure('figure_leave')\n", " );\n", "\n", " canvas_div.addEventListener('wheel', function (event) {\n", " if (event.deltaY < 0) {\n", " event.step = 1;\n", " } else {\n", " event.step = -1;\n", " }\n", " on_mouse_event_closure('scroll')(event);\n", " });\n", "\n", " canvas_div.appendChild(canvas);\n", " canvas_div.appendChild(rubberband_canvas);\n", "\n", " this.rubberband_context = rubberband_canvas.getContext('2d');\n", " this.rubberband_context.strokeStyle = '#000000';\n", "\n", " this._resize_canvas = function (width, height, forward) {\n", " if (forward) {\n", " canvas_div.style.width = width + 'px';\n", " canvas_div.style.height = height + 'px';\n", " }\n", " };\n", "\n", " // Disable right mouse context menu.\n", " this.rubberband_canvas.addEventListener('contextmenu', function (_e) {\n", " event.preventDefault();\n", " return false;\n", " });\n", "\n", " function set_focus() {\n", " canvas.focus();\n", " canvas_div.focus();\n", " }\n", "\n", " window.setTimeout(set_focus, 100);\n", "};\n", "\n", "mpl.figure.prototype._init_toolbar = function () {\n", " var fig = this;\n", "\n", " var toolbar = document.createElement('div');\n", " toolbar.classList = 'mpl-toolbar';\n", " this.root.appendChild(toolbar);\n", "\n", " function on_click_closure(name) {\n", " return function (_event) {\n", " return fig.toolbar_button_onclick(name);\n", " };\n", " }\n", "\n", " function on_mouseover_closure(tooltip) {\n", " return function (event) {\n", " if (!event.currentTarget.disabled) {\n", " return fig.toolbar_button_onmouseover(tooltip);\n", " }\n", " };\n", " }\n", "\n", " fig.buttons = {};\n", " var buttonGroup = document.createElement('div');\n", " buttonGroup.classList = 'mpl-button-group';\n", " for (var toolbar_ind in mpl.toolbar_items) {\n", " var name = mpl.toolbar_items[toolbar_ind][0];\n", " var tooltip = mpl.toolbar_items[toolbar_ind][1];\n", " var image = mpl.toolbar_items[toolbar_ind][2];\n", " var method_name = mpl.toolbar_items[toolbar_ind][3];\n", "\n", " if (!name) {\n", " /* Instead of a spacer, we start a new button group. */\n", " if (buttonGroup.hasChildNodes()) {\n", " toolbar.appendChild(buttonGroup);\n", " }\n", " buttonGroup = document.createElement('div');\n", " buttonGroup.classList = 'mpl-button-group';\n", " continue;\n", " }\n", "\n", " var button = (fig.buttons[name] = document.createElement('button'));\n", " button.classList = 'mpl-widget';\n", " button.setAttribute('role', 'button');\n", " button.setAttribute('aria-disabled', 'false');\n", " button.addEventListener('click', on_click_closure(method_name));\n", " button.addEventListener('mouseover', on_mouseover_closure(tooltip));\n", "\n", " var icon_img = document.createElement('img');\n", " icon_img.src = '_images/' + image + '.png';\n", " icon_img.srcset = '_images/' + image + '_large.png 2x';\n", " icon_img.alt = tooltip;\n", " button.appendChild(icon_img);\n", "\n", " buttonGroup.appendChild(button);\n", " }\n", "\n", " if (buttonGroup.hasChildNodes()) {\n", " toolbar.appendChild(buttonGroup);\n", " }\n", "\n", " var fmt_picker = document.createElement('select');\n", " fmt_picker.classList = 'mpl-widget';\n", " toolbar.appendChild(fmt_picker);\n", " this.format_dropdown = fmt_picker;\n", "\n", " for (var ind in mpl.extensions) {\n", " var fmt = mpl.extensions[ind];\n", " var option = document.createElement('option');\n", " option.selected = fmt === mpl.default_extension;\n", " option.innerHTML = fmt;\n", " fmt_picker.appendChild(option);\n", " }\n", "\n", " var status_bar = document.createElement('span');\n", " status_bar.classList = 'mpl-message';\n", " toolbar.appendChild(status_bar);\n", " this.message = status_bar;\n", "};\n", "\n", "mpl.figure.prototype.request_resize = function (x_pixels, y_pixels) {\n", " // Request matplotlib to resize the figure. Matplotlib will then trigger a resize in the client,\n", " // which will in turn request a refresh of the image.\n", " this.send_message('resize', { width: x_pixels, height: y_pixels });\n", "};\n", "\n", "mpl.figure.prototype.send_message = function (type, properties) {\n", " properties['type'] = type;\n", " properties['figure_id'] = this.id;\n", " this.ws.send(JSON.stringify(properties));\n", "};\n", "\n", "mpl.figure.prototype.send_draw_message = function () {\n", " if (!this.waiting) {\n", " this.waiting = true;\n", " this.ws.send(JSON.stringify({ type: 'draw', figure_id: this.id }));\n", " }\n", "};\n", "\n", "mpl.figure.prototype.handle_save = function (fig, _msg) {\n", " var format_dropdown = fig.format_dropdown;\n", " var format = format_dropdown.options[format_dropdown.selectedIndex].value;\n", " fig.ondownload(fig, format);\n", "};\n", "\n", "mpl.figure.prototype.handle_resize = function (fig, msg) {\n", " var size = msg['size'];\n", " if (size[0] !== fig.canvas.width || size[1] !== fig.canvas.height) {\n", " fig._resize_canvas(size[0], size[1], msg['forward']);\n", " fig.send_message('refresh', {});\n", " }\n", "};\n", "\n", "mpl.figure.prototype.handle_rubberband = function (fig, msg) {\n", " var x0 = msg['x0'] / fig.ratio;\n", " var y0 = (fig.canvas.height - msg['y0']) / fig.ratio;\n", " var x1 = msg['x1'] / fig.ratio;\n", " var y1 = (fig.canvas.height - msg['y1']) / fig.ratio;\n", " x0 = Math.floor(x0) + 0.5;\n", " y0 = Math.floor(y0) + 0.5;\n", " x1 = Math.floor(x1) + 0.5;\n", " y1 = Math.floor(y1) + 0.5;\n", " var min_x = Math.min(x0, x1);\n", " var min_y = Math.min(y0, y1);\n", " var width = Math.abs(x1 - x0);\n", " var height = Math.abs(y1 - y0);\n", "\n", " fig.rubberband_context.clearRect(\n", " 0,\n", " 0,\n", " fig.canvas.width / fig.ratio,\n", " fig.canvas.height / fig.ratio\n", " );\n", "\n", " fig.rubberband_context.strokeRect(min_x, min_y, width, height);\n", "};\n", "\n", "mpl.figure.prototype.handle_figure_label = function (fig, msg) {\n", " // Updates the figure title.\n", " fig.header.textContent = msg['label'];\n", "};\n", "\n", "mpl.figure.prototype.handle_cursor = function (fig, msg) {\n", " fig.rubberband_canvas.style.cursor = msg['cursor'];\n", "};\n", "\n", "mpl.figure.prototype.handle_message = function (fig, msg) {\n", " fig.message.textContent = msg['message'];\n", "};\n", "\n", "mpl.figure.prototype.handle_draw = function (fig, _msg) {\n", " // Request the server to send over a new figure.\n", " fig.send_draw_message();\n", "};\n", "\n", "mpl.figure.prototype.handle_image_mode = function (fig, msg) {\n", " fig.image_mode = msg['mode'];\n", "};\n", "\n", "mpl.figure.prototype.handle_history_buttons = function (fig, msg) {\n", " for (var key in msg) {\n", " if (!(key in fig.buttons)) {\n", " continue;\n", " }\n", " fig.buttons[key].disabled = !msg[key];\n", " fig.buttons[key].setAttribute('aria-disabled', !msg[key]);\n", " }\n", "};\n", "\n", "mpl.figure.prototype.handle_navigate_mode = function (fig, msg) {\n", " if (msg['mode'] === 'PAN') {\n", " fig.buttons['Pan'].classList.add('active');\n", " fig.buttons['Zoom'].classList.remove('active');\n", " } else if (msg['mode'] === 'ZOOM') {\n", " fig.buttons['Pan'].classList.remove('active');\n", " fig.buttons['Zoom'].classList.add('active');\n", " } else {\n", " fig.buttons['Pan'].classList.remove('active');\n", " fig.buttons['Zoom'].classList.remove('active');\n", " }\n", "};\n", "\n", "mpl.figure.prototype.updated_canvas_event = function () {\n", " // Called whenever the canvas gets updated.\n", " this.send_message('ack', {});\n", "};\n", "\n", "// A function to construct a web socket function for onmessage handling.\n", "// Called in the figure constructor.\n", "mpl.figure.prototype._make_on_message_function = function (fig) {\n", " return function socket_on_message(evt) {\n", " if (evt.data instanceof Blob) {\n", " var img = evt.data;\n", " if (img.type !== 'image/png') {\n", " /* FIXME: We get \"Resource interpreted as Image but\n", " * transferred with MIME type text/plain:\" errors on\n", " * Chrome. But how to set the MIME type? It doesn't seem\n", " * to be part of the websocket stream */\n", " img.type = 'image/png';\n", " }\n", "\n", " /* Free the memory for the previous frames */\n", " if (fig.imageObj.src) {\n", " (window.URL || window.webkitURL).revokeObjectURL(\n", " fig.imageObj.src\n", " );\n", " }\n", "\n", " fig.imageObj.src = (window.URL || window.webkitURL).createObjectURL(\n", " img\n", " );\n", " fig.updated_canvas_event();\n", " fig.waiting = false;\n", " return;\n", " } else if (\n", " typeof evt.data === 'string' &&\n", " evt.data.slice(0, 21) === 'data:image/png;base64'\n", " ) {\n", " fig.imageObj.src = evt.data;\n", " fig.updated_canvas_event();\n", " fig.waiting = false;\n", " return;\n", " }\n", "\n", " var msg = JSON.parse(evt.data);\n", " var msg_type = msg['type'];\n", "\n", " // Call the \"handle_{type}\" callback, which takes\n", " // the figure and JSON message as its only arguments.\n", " try {\n", " var callback = fig['handle_' + msg_type];\n", " } catch (e) {\n", " console.log(\n", " \"No handler for the '\" + msg_type + \"' message type: \",\n", " msg\n", " );\n", " return;\n", " }\n", "\n", " if (callback) {\n", " try {\n", " // console.log(\"Handling '\" + msg_type + \"' message: \", msg);\n", " callback(fig, msg);\n", " } catch (e) {\n", " console.log(\n", " \"Exception inside the 'handler_\" + msg_type + \"' callback:\",\n", " e,\n", " e.stack,\n", " msg\n", " );\n", " }\n", " }\n", " };\n", "};\n", "\n", "// from https://stackoverflow.com/questions/1114465/getting-mouse-location-in-canvas\n", "mpl.findpos = function (e) {\n", " //this section is from http://www.quirksmode.org/js/events_properties.html\n", " var targ;\n", " if (!e) {\n", " e = window.event;\n", " }\n", " if (e.target) {\n", " targ = e.target;\n", " } else if (e.srcElement) {\n", " targ = e.srcElement;\n", " }\n", " if (targ.nodeType === 3) {\n", " // defeat Safari bug\n", " targ = targ.parentNode;\n", " }\n", "\n", " // pageX,Y are the mouse positions relative to the document\n", " var boundingRect = targ.getBoundingClientRect();\n", " var x = e.pageX - (boundingRect.left + document.body.scrollLeft);\n", " var y = e.pageY - (boundingRect.top + document.body.scrollTop);\n", "\n", " return { x: x, y: y };\n", "};\n", "\n", "/*\n", " * return a copy of an object with only non-object keys\n", " * we need this to avoid circular references\n", " * https://stackoverflow.com/a/24161582/3208463\n", " */\n", "function simpleKeys(original) {\n", " return Object.keys(original).reduce(function (obj, key) {\n", " if (typeof original[key] !== 'object') {\n", " obj[key] = original[key];\n", " }\n", " return obj;\n", " }, {});\n", "}\n", "\n", "mpl.figure.prototype.mouse_event = function (event, name) {\n", " var canvas_pos = mpl.findpos(event);\n", "\n", " if (name === 'button_press') {\n", " this.canvas.focus();\n", " this.canvas_div.focus();\n", " }\n", "\n", " var x = canvas_pos.x * this.ratio;\n", " var y = canvas_pos.y * this.ratio;\n", "\n", " this.send_message(name, {\n", " x: x,\n", " y: y,\n", " button: event.button,\n", " step: event.step,\n", " guiEvent: simpleKeys(event),\n", " });\n", "\n", " /* This prevents the web browser from automatically changing to\n", " * the text insertion cursor when the button is pressed. We want\n", " * to control all of the cursor setting manually through the\n", " * 'cursor' event from matplotlib */\n", " event.preventDefault();\n", " return false;\n", "};\n", "\n", "mpl.figure.prototype._key_event_extra = function (_event, _name) {\n", " // Handle any extra behaviour associated with a key event\n", "};\n", "\n", "mpl.figure.prototype.key_event = function (event, name) {\n", " // Prevent repeat events\n", " if (name === 'key_press') {\n", " if (event.key === this._key) {\n", " return;\n", " } else {\n", " this._key = event.key;\n", " }\n", " }\n", " if (name === 'key_release') {\n", " this._key = null;\n", " }\n", "\n", " var value = '';\n", " if (event.ctrlKey && event.key !== 'Control') {\n", " value += 'ctrl+';\n", " }\n", " else if (event.altKey && event.key !== 'Alt') {\n", " value += 'alt+';\n", " }\n", " else if (event.shiftKey && event.key !== 'Shift') {\n", " value += 'shift+';\n", " }\n", "\n", " value += 'k' + event.key;\n", "\n", " this._key_event_extra(event, name);\n", "\n", " this.send_message(name, { key: value, guiEvent: simpleKeys(event) });\n", " return false;\n", "};\n", "\n", "mpl.figure.prototype.toolbar_button_onclick = function (name) {\n", " if (name === 'download') {\n", " this.handle_save(this, null);\n", " } else {\n", " this.send_message('toolbar_button', { name: name });\n", " }\n", "};\n", "\n", "mpl.figure.prototype.toolbar_button_onmouseover = function (tooltip) {\n", " this.message.textContent = tooltip;\n", "};\n", "\n", "///////////////// REMAINING CONTENT GENERATED BY embed_js.py /////////////////\n", "// prettier-ignore\n", "var _JSXTOOLS_RESIZE_OBSERVER=function(A){var t,i=new WeakMap,n=new WeakMap,a=new WeakMap,r=new WeakMap,o=new Set;function s(e){if(!(this instanceof s))throw new TypeError(\"Constructor requires 'new' operator\");i.set(this,e)}function h(){throw new TypeError(\"Function is not a constructor\")}function c(e,t,i,n){e=0 in arguments?Number(arguments[0]):0,t=1 in arguments?Number(arguments[1]):0,i=2 in arguments?Number(arguments[2]):0,n=3 in arguments?Number(arguments[3]):0,this.right=(this.x=this.left=e)+(this.width=i),this.bottom=(this.y=this.top=t)+(this.height=n),Object.freeze(this)}function d(){t=requestAnimationFrame(d);var s=new WeakMap,p=new Set;o.forEach((function(t){r.get(t).forEach((function(i){var r=t instanceof window.SVGElement,o=a.get(t),d=r?0:parseFloat(o.paddingTop),f=r?0:parseFloat(o.paddingRight),l=r?0:parseFloat(o.paddingBottom),u=r?0:parseFloat(o.paddingLeft),g=r?0:parseFloat(o.borderTopWidth),m=r?0:parseFloat(o.borderRightWidth),w=r?0:parseFloat(o.borderBottomWidth),b=u+f,F=d+l,v=(r?0:parseFloat(o.borderLeftWidth))+m,W=g+w,y=r?0:t.offsetHeight-W-t.clientHeight,E=r?0:t.offsetWidth-v-t.clientWidth,R=b+v,z=F+W,M=r?t.width:parseFloat(o.width)-R-E,O=r?t.height:parseFloat(o.height)-z-y;if(n.has(t)){var k=n.get(t);if(k[0]===M&&k[1]===O)return}n.set(t,[M,O]);var S=Object.create(h.prototype);S.target=t,S.contentRect=new c(u,d,M,O),s.has(i)||(s.set(i,[]),p.add(i)),s.get(i).push(S)}))})),p.forEach((function(e){i.get(e).call(e,s.get(e),e)}))}return s.prototype.observe=function(i){if(i instanceof window.Element){r.has(i)||(r.set(i,new Set),o.add(i),a.set(i,window.getComputedStyle(i)));var n=r.get(i);n.has(this)||n.add(this),cancelAnimationFrame(t),t=requestAnimationFrame(d)}},s.prototype.unobserve=function(i){if(i instanceof window.Element&&r.has(i)){var n=r.get(i);n.has(this)&&(n.delete(this),n.size||(r.delete(i),o.delete(i))),n.size||r.delete(i),o.size||cancelAnimationFrame(t)}},A.DOMRectReadOnly=c,A.ResizeObserver=s,A.ResizeObserverEntry=h,A}; // eslint-disable-line\n", "mpl.toolbar_items = [[\"Home\", \"Reset original view\", \"fa fa-home\", \"home\"], [\"Back\", \"Back to previous view\", \"fa fa-arrow-left\", \"back\"], [\"Forward\", \"Forward to next view\", \"fa fa-arrow-right\", \"forward\"], [\"\", \"\", \"\", \"\"], [\"Pan\", \"Left button pans, Right button zooms\\nx/y fixes axis, CTRL fixes aspect\", \"fa fa-arrows\", \"pan\"], [\"Zoom\", \"Zoom to rectangle\\nx/y fixes axis\", \"fa fa-square-o\", \"zoom\"], [\"\", \"\", \"\", \"\"], [\"Download\", \"Download plot\", \"fa fa-floppy-o\", \"download\"]];\n", "\n", "mpl.extensions = [\"eps\", \"jpeg\", \"pgf\", \"pdf\", \"png\", \"ps\", \"raw\", \"svg\", \"tif\", \"webp\"];\n", "\n", "mpl.default_extension = \"png\";/* global mpl */\n", "\n", "var comm_websocket_adapter = function (comm) {\n", " // Create a \"websocket\"-like object which calls the given IPython comm\n", " // object with the appropriate methods. Currently this is a non binary\n", " // socket, so there is still some room for performance tuning.\n", " var ws = {};\n", "\n", " ws.binaryType = comm.kernel.ws.binaryType;\n", " ws.readyState = comm.kernel.ws.readyState;\n", " function updateReadyState(_event) {\n", " if (comm.kernel.ws) {\n", " ws.readyState = comm.kernel.ws.readyState;\n", " } else {\n", " ws.readyState = 3; // Closed state.\n", " }\n", " }\n", " comm.kernel.ws.addEventListener('open', updateReadyState);\n", " comm.kernel.ws.addEventListener('close', updateReadyState);\n", " comm.kernel.ws.addEventListener('error', updateReadyState);\n", "\n", " ws.close = function () {\n", " comm.close();\n", " };\n", " ws.send = function (m) {\n", " //console.log('sending', m);\n", " comm.send(m);\n", " };\n", " // Register the callback with on_msg.\n", " comm.on_msg(function (msg) {\n", " //console.log('receiving', msg['content']['data'], msg);\n", " var data = msg['content']['data'];\n", " if (data['blob'] !== undefined) {\n", " data = {\n", " data: new Blob(msg['buffers'], { type: data['blob'] }),\n", " };\n", " }\n", " // Pass the mpl event to the overridden (by mpl) onmessage function.\n", " ws.onmessage(data);\n", " });\n", " return ws;\n", "};\n", "\n", "mpl.mpl_figure_comm = function (comm, msg) {\n", " // This is the function which gets called when the mpl process\n", " // starts-up an IPython Comm through the \"matplotlib\" channel.\n", "\n", " var id = msg.content.data.id;\n", " // Get hold of the div created by the display call when the Comm\n", " // socket was opened in Python.\n", " var element = document.getElementById(id);\n", " var ws_proxy = comm_websocket_adapter(comm);\n", "\n", " function ondownload(figure, _format) {\n", " window.open(figure.canvas.toDataURL());\n", " }\n", "\n", " var fig = new mpl.figure(id, ws_proxy, ondownload, element);\n", "\n", " // Call onopen now - mpl needs it, as it is assuming we've passed it a real\n", " // web socket which is closed, not our websocket->open comm proxy.\n", " ws_proxy.onopen();\n", "\n", " fig.parent_element = element;\n", " fig.cell_info = mpl.find_output_cell(\"
\");\n", " if (!fig.cell_info) {\n", " console.error('Failed to find cell for figure', id, fig);\n", " return;\n", " }\n", " fig.cell_info[0].output_area.element.on(\n", " 'cleared',\n", " { fig: fig },\n", " fig._remove_fig_handler\n", " );\n", "};\n", "\n", "mpl.figure.prototype.handle_close = function (fig, msg) {\n", " var width = fig.canvas.width / fig.ratio;\n", " fig.cell_info[0].output_area.element.off(\n", " 'cleared',\n", " fig._remove_fig_handler\n", " );\n", " fig.resizeObserverInstance.unobserve(fig.canvas_div);\n", "\n", " // Update the output cell to use the data from the current canvas.\n", " fig.push_to_output();\n", " var dataURL = fig.canvas.toDataURL();\n", " // Re-enable the keyboard manager in IPython - without this line, in FF,\n", " // the notebook keyboard shortcuts fail.\n", " IPython.keyboard_manager.enable();\n", " fig.parent_element.innerHTML =\n", " '';\n", " fig.close_ws(fig, msg);\n", "};\n", "\n", "mpl.figure.prototype.close_ws = function (fig, msg) {\n", " fig.send_message('closing', msg);\n", " // fig.ws.close()\n", "};\n", "\n", "mpl.figure.prototype.push_to_output = function (_remove_interactive) {\n", " // Turn the data on the canvas into data in the output cell.\n", " var width = this.canvas.width / this.ratio;\n", " var dataURL = this.canvas.toDataURL();\n", " this.cell_info[1]['text/html'] =\n", " '';\n", "};\n", "\n", "mpl.figure.prototype.updated_canvas_event = function () {\n", " // Tell IPython that the notebook contents must change.\n", " IPython.notebook.set_dirty(true);\n", " this.send_message('ack', {});\n", " var fig = this;\n", " // Wait a second, then push the new image to the DOM so\n", " // that it is saved nicely (might be nice to debounce this).\n", " setTimeout(function () {\n", " fig.push_to_output();\n", " }, 1000);\n", "};\n", "\n", "mpl.figure.prototype._init_toolbar = function () {\n", " var fig = this;\n", "\n", " var toolbar = document.createElement('div');\n", " toolbar.classList = 'btn-toolbar';\n", " this.root.appendChild(toolbar);\n", "\n", " function on_click_closure(name) {\n", " return function (_event) {\n", " return fig.toolbar_button_onclick(name);\n", " };\n", " }\n", "\n", " function on_mouseover_closure(tooltip) {\n", " return function (event) {\n", " if (!event.currentTarget.disabled) {\n", " return fig.toolbar_button_onmouseover(tooltip);\n", " }\n", " };\n", " }\n", "\n", " fig.buttons = {};\n", " var buttonGroup = document.createElement('div');\n", " buttonGroup.classList = 'btn-group';\n", " var button;\n", " for (var toolbar_ind in mpl.toolbar_items) {\n", " var name = mpl.toolbar_items[toolbar_ind][0];\n", " var tooltip = mpl.toolbar_items[toolbar_ind][1];\n", " var image = mpl.toolbar_items[toolbar_ind][2];\n", " var method_name = mpl.toolbar_items[toolbar_ind][3];\n", "\n", " if (!name) {\n", " /* Instead of a spacer, we start a new button group. */\n", " if (buttonGroup.hasChildNodes()) {\n", " toolbar.appendChild(buttonGroup);\n", " }\n", " buttonGroup = document.createElement('div');\n", " buttonGroup.classList = 'btn-group';\n", " continue;\n", " }\n", "\n", " button = fig.buttons[name] = document.createElement('button');\n", " button.classList = 'btn btn-default';\n", " button.href = '#';\n", " button.title = name;\n", " button.innerHTML = '';\n", " button.addEventListener('click', on_click_closure(method_name));\n", " button.addEventListener('mouseover', on_mouseover_closure(tooltip));\n", " buttonGroup.appendChild(button);\n", " }\n", "\n", " if (buttonGroup.hasChildNodes()) {\n", " toolbar.appendChild(buttonGroup);\n", " }\n", "\n", " // Add the status bar.\n", " var status_bar = document.createElement('span');\n", " status_bar.classList = 'mpl-message pull-right';\n", " toolbar.appendChild(status_bar);\n", " this.message = status_bar;\n", "\n", " // Add the close button to the window.\n", " var buttongrp = document.createElement('div');\n", " buttongrp.classList = 'btn-group inline pull-right';\n", " button = document.createElement('button');\n", " button.classList = 'btn btn-mini btn-primary';\n", " button.href = '#';\n", " button.title = 'Stop Interaction';\n", " button.innerHTML = '';\n", " button.addEventListener('click', function (_evt) {\n", " fig.handle_close(fig, {});\n", " });\n", " button.addEventListener(\n", " 'mouseover',\n", " on_mouseover_closure('Stop Interaction')\n", " );\n", " buttongrp.appendChild(button);\n", " var titlebar = this.root.querySelector('.ui-dialog-titlebar');\n", " titlebar.insertBefore(buttongrp, titlebar.firstChild);\n", "};\n", "\n", "mpl.figure.prototype._remove_fig_handler = function (event) {\n", " var fig = event.data.fig;\n", " if (event.target !== this) {\n", " // Ignore bubbled events from children.\n", " return;\n", " }\n", " fig.close_ws(fig, {});\n", "};\n", "\n", "mpl.figure.prototype._root_extra_style = function (el) {\n", " el.style.boxSizing = 'content-box'; // override notebook setting of border-box.\n", "};\n", "\n", "mpl.figure.prototype._canvas_extra_style = function (el) {\n", " // this is important to make the div 'focusable\n", " el.setAttribute('tabindex', 0);\n", " // reach out to IPython and tell the keyboard manager to turn it's self\n", " // off when our div gets focus\n", "\n", " // location in version 3\n", " if (IPython.notebook.keyboard_manager) {\n", " IPython.notebook.keyboard_manager.register_events(el);\n", " } else {\n", " // location in version 2\n", " IPython.keyboard_manager.register_events(el);\n", " }\n", "};\n", "\n", "mpl.figure.prototype._key_event_extra = function (event, _name) {\n", " // Check for shift+enter\n", " if (event.shiftKey && event.which === 13) {\n", " this.canvas_div.blur();\n", " // select the cell after this one\n", " var index = IPython.notebook.find_cell_index(this.cell_info[0]);\n", " IPython.notebook.select(index + 1);\n", " }\n", "};\n", "\n", "mpl.figure.prototype.handle_save = function (fig, _msg) {\n", " fig.ondownload(fig, null);\n", "};\n", "\n", "mpl.find_output_cell = function (html_output) {\n", " // Return the cell and output element which can be found *uniquely* in the notebook.\n", " // Note - this is a bit hacky, but it is done because the \"notebook_saving.Notebook\"\n", " // IPython event is triggered only after the cells have been serialised, which for\n", " // our purposes (turning an active figure into a static one), is too late.\n", " var cells = IPython.notebook.get_cells();\n", " var ncells = cells.length;\n", " for (var i = 0; i < ncells; i++) {\n", " var cell = cells[i];\n", " if (cell.cell_type === 'code') {\n", " for (var j = 0; j < cell.output_area.outputs.length; j++) {\n", " var data = cell.output_area.outputs[j];\n", " if (data.data) {\n", " // IPython >= 3 moved mimebundle to data attribute of output\n", " data = data.data;\n", " }\n", " if (data['text/html'] === html_output) {\n", " return [cell, data, j];\n", " }\n", " }\n", " }\n", " }\n", "};\n", "\n", "// Register the function which deals with the matplotlib target/channel.\n", "// The kernel may be null if the page has been refreshed.\n", "if (IPython.notebook.kernel !== null) {\n", " IPython.notebook.kernel.comm_manager.register_target(\n", " 'matplotlib',\n", " mpl.mpl_figure_comm\n", " );\n", "}\n" ], "text/plain": [ "" ] }, "metadata": {}, "output_type": "display_data" }, { "data": { "text/html": [ "" ], "text/plain": [ "" ] }, "metadata": {}, "output_type": "display_data" } ], "source": [ "q = np.linspace(0, 100, 10000)\n", "ps = np.percentile(cat[n][\"m200\"], q)\n", "f = interp1d(q, np.log10(ps))\n", "\n", "pcuts = [99.99, 95., 65.]\n", "\n", "\n", "colors = plt.rcParams['axes.prop_cycle'].by_key()['color']\n", "plt.figure()\n", "plt.plot(ps, q)\n", "\n", "for i, pcut in enumerate(pcuts):\n", " N = int((100 - pcut) / 100 * cat[n][\"m200\"].size)\n", " plt.axvline(10**float(f(pcut)), ls=\"--\", c=colors[i + 1],\n", " label=r\"${}^{{\\rm th}} percentile, {}$\".format(pcut, N), lw=1)\n", " plt.axhline(pcut, c=colors[i + 1], ls=\"--\", lw=1)\n", "plt.xscale(\"log\")\n", "plt.legend()\n", "plt.show()" ] }, { "cell_type": "code", "execution_count": 157, "id": "de2a2714", "metadata": { "ExecuteTime": { "end_time": "2022-11-21T20:30:43.637731Z", "start_time": "2022-11-21T20:30:43.589062Z" } }, "outputs": [], "source": [ "ids = np.where(cat[n][\"m200\"] > 10**f(pcuts[2]))[0]\n", "ids = np.random.choice(ids, size=3)" ] }, { "cell_type": "code", "execution_count": 159, "id": "2ab2af25", "metadata": { "ExecuteTime": { "end_time": "2022-11-21T20:30:54.506179Z", "start_time": "2022-11-21T20:30:53.801870Z" } }, "outputs": [ { "data": { "application/javascript": [ "/* Put everything inside the global mpl namespace */\n", "/* global mpl */\n", "window.mpl = {};\n", "\n", "mpl.get_websocket_type = function () {\n", " if (typeof WebSocket !== 'undefined') {\n", " return WebSocket;\n", " } else if (typeof MozWebSocket !== 'undefined') {\n", " return MozWebSocket;\n", " } else {\n", " alert(\n", " 'Your browser does not have WebSocket support. ' +\n", " 'Please try Chrome, Safari or Firefox ≥ 6. ' +\n", " 'Firefox 4 and 5 are also supported but you ' +\n", " 'have to enable WebSockets in about:config.'\n", " );\n", " }\n", "};\n", "\n", "mpl.figure = function (figure_id, websocket, ondownload, parent_element) {\n", " this.id = figure_id;\n", "\n", " this.ws = websocket;\n", "\n", " this.supports_binary = this.ws.binaryType !== undefined;\n", "\n", " if (!this.supports_binary) {\n", " var warnings = document.getElementById('mpl-warnings');\n", " if (warnings) {\n", " warnings.style.display = 'block';\n", " warnings.textContent =\n", " 'This browser does not support binary websocket messages. ' +\n", " 'Performance may be slow.';\n", " }\n", " }\n", "\n", " this.imageObj = new Image();\n", "\n", " this.context = undefined;\n", " this.message = undefined;\n", " this.canvas = undefined;\n", " this.rubberband_canvas = undefined;\n", " this.rubberband_context = undefined;\n", " this.format_dropdown = undefined;\n", "\n", " this.image_mode = 'full';\n", "\n", " this.root = document.createElement('div');\n", " this.root.setAttribute('style', 'display: inline-block');\n", " this._root_extra_style(this.root);\n", "\n", " parent_element.appendChild(this.root);\n", "\n", " this._init_header(this);\n", " this._init_canvas(this);\n", " this._init_toolbar(this);\n", "\n", " var fig = this;\n", "\n", " this.waiting = false;\n", "\n", " this.ws.onopen = function () {\n", " fig.send_message('supports_binary', { value: fig.supports_binary });\n", " fig.send_message('send_image_mode', {});\n", " if (fig.ratio !== 1) {\n", " fig.send_message('set_device_pixel_ratio', {\n", " device_pixel_ratio: fig.ratio,\n", " });\n", " }\n", " fig.send_message('refresh', {});\n", " };\n", "\n", " this.imageObj.onload = function () {\n", " if (fig.image_mode === 'full') {\n", " // Full images could contain transparency (where diff images\n", " // almost always do), so we need to clear the canvas so that\n", " // there is no ghosting.\n", " fig.context.clearRect(0, 0, fig.canvas.width, fig.canvas.height);\n", " }\n", " fig.context.drawImage(fig.imageObj, 0, 0);\n", " };\n", "\n", " this.imageObj.onunload = function () {\n", " fig.ws.close();\n", " };\n", "\n", " this.ws.onmessage = this._make_on_message_function(this);\n", "\n", " this.ondownload = ondownload;\n", "};\n", "\n", "mpl.figure.prototype._init_header = function () {\n", " var titlebar = document.createElement('div');\n", " titlebar.classList =\n", " 'ui-dialog-titlebar ui-widget-header ui-corner-all ui-helper-clearfix';\n", " var titletext = document.createElement('div');\n", " titletext.classList = 'ui-dialog-title';\n", " titletext.setAttribute(\n", " 'style',\n", " 'width: 100%; text-align: center; padding: 3px;'\n", " );\n", " titlebar.appendChild(titletext);\n", " this.root.appendChild(titlebar);\n", " this.header = titletext;\n", "};\n", "\n", "mpl.figure.prototype._canvas_extra_style = function (_canvas_div) {};\n", "\n", "mpl.figure.prototype._root_extra_style = function (_canvas_div) {};\n", "\n", "mpl.figure.prototype._init_canvas = function () {\n", " var fig = this;\n", "\n", " var canvas_div = (this.canvas_div = document.createElement('div'));\n", " canvas_div.setAttribute(\n", " 'style',\n", " 'border: 1px solid #ddd;' +\n", " 'box-sizing: content-box;' +\n", " 'clear: both;' +\n", " 'min-height: 1px;' +\n", " 'min-width: 1px;' +\n", " 'outline: 0;' +\n", " 'overflow: hidden;' +\n", " 'position: relative;' +\n", " 'resize: both;'\n", " );\n", "\n", " function on_keyboard_event_closure(name) {\n", " return function (event) {\n", " return fig.key_event(event, name);\n", " };\n", " }\n", "\n", " canvas_div.addEventListener(\n", " 'keydown',\n", " on_keyboard_event_closure('key_press')\n", " );\n", " canvas_div.addEventListener(\n", " 'keyup',\n", " on_keyboard_event_closure('key_release')\n", " );\n", "\n", " this._canvas_extra_style(canvas_div);\n", " this.root.appendChild(canvas_div);\n", "\n", " var canvas = (this.canvas = document.createElement('canvas'));\n", " canvas.classList.add('mpl-canvas');\n", " canvas.setAttribute('style', 'box-sizing: content-box;');\n", "\n", " this.context = canvas.getContext('2d');\n", "\n", " var backingStore =\n", " this.context.backingStorePixelRatio ||\n", " this.context.webkitBackingStorePixelRatio ||\n", " this.context.mozBackingStorePixelRatio ||\n", " this.context.msBackingStorePixelRatio ||\n", " this.context.oBackingStorePixelRatio ||\n", " this.context.backingStorePixelRatio ||\n", " 1;\n", "\n", " this.ratio = (window.devicePixelRatio || 1) / backingStore;\n", "\n", " var rubberband_canvas = (this.rubberband_canvas = document.createElement(\n", " 'canvas'\n", " ));\n", " rubberband_canvas.setAttribute(\n", " 'style',\n", " 'box-sizing: content-box; position: absolute; left: 0; top: 0; z-index: 1;'\n", " );\n", "\n", " // Apply a ponyfill if ResizeObserver is not implemented by browser.\n", " if (this.ResizeObserver === undefined) {\n", " if (window.ResizeObserver !== undefined) {\n", " this.ResizeObserver = window.ResizeObserver;\n", " } else {\n", " var obs = _JSXTOOLS_RESIZE_OBSERVER({});\n", " this.ResizeObserver = obs.ResizeObserver;\n", " }\n", " }\n", "\n", " this.resizeObserverInstance = new this.ResizeObserver(function (entries) {\n", " var nentries = entries.length;\n", " for (var i = 0; i < nentries; i++) {\n", " var entry = entries[i];\n", " var width, height;\n", " if (entry.contentBoxSize) {\n", " if (entry.contentBoxSize instanceof Array) {\n", " // Chrome 84 implements new version of spec.\n", " width = entry.contentBoxSize[0].inlineSize;\n", " height = entry.contentBoxSize[0].blockSize;\n", " } else {\n", " // Firefox implements old version of spec.\n", " width = entry.contentBoxSize.inlineSize;\n", " height = entry.contentBoxSize.blockSize;\n", " }\n", " } else {\n", " // Chrome <84 implements even older version of spec.\n", " width = entry.contentRect.width;\n", " height = entry.contentRect.height;\n", " }\n", "\n", " // Keep the size of the canvas and rubber band canvas in sync with\n", " // the canvas container.\n", " if (entry.devicePixelContentBoxSize) {\n", " // Chrome 84 implements new version of spec.\n", " canvas.setAttribute(\n", " 'width',\n", " entry.devicePixelContentBoxSize[0].inlineSize\n", " );\n", " canvas.setAttribute(\n", " 'height',\n", " entry.devicePixelContentBoxSize[0].blockSize\n", " );\n", " } else {\n", " canvas.setAttribute('width', width * fig.ratio);\n", " canvas.setAttribute('height', height * fig.ratio);\n", " }\n", " canvas.setAttribute(\n", " 'style',\n", " 'width: ' + width + 'px; height: ' + height + 'px;'\n", " );\n", "\n", " rubberband_canvas.setAttribute('width', width);\n", " rubberband_canvas.setAttribute('height', height);\n", "\n", " // And update the size in Python. We ignore the initial 0/0 size\n", " // that occurs as the element is placed into the DOM, which should\n", " // otherwise not happen due to the minimum size styling.\n", " if (fig.ws.readyState == 1 && width != 0 && height != 0) {\n", " fig.request_resize(width, height);\n", " }\n", " }\n", " });\n", " this.resizeObserverInstance.observe(canvas_div);\n", "\n", " function on_mouse_event_closure(name) {\n", " return function (event) {\n", " return fig.mouse_event(event, name);\n", " };\n", " }\n", "\n", " rubberband_canvas.addEventListener(\n", " 'mousedown',\n", " on_mouse_event_closure('button_press')\n", " );\n", " rubberband_canvas.addEventListener(\n", " 'mouseup',\n", " on_mouse_event_closure('button_release')\n", " );\n", " rubberband_canvas.addEventListener(\n", " 'dblclick',\n", " on_mouse_event_closure('dblclick')\n", " );\n", " // Throttle sequential mouse events to 1 every 20ms.\n", " rubberband_canvas.addEventListener(\n", " 'mousemove',\n", " on_mouse_event_closure('motion_notify')\n", " );\n", "\n", " rubberband_canvas.addEventListener(\n", " 'mouseenter',\n", " on_mouse_event_closure('figure_enter')\n", " );\n", " rubberband_canvas.addEventListener(\n", " 'mouseleave',\n", " on_mouse_event_closure('figure_leave')\n", " );\n", "\n", " canvas_div.addEventListener('wheel', function (event) {\n", " if (event.deltaY < 0) {\n", " event.step = 1;\n", " } else {\n", " event.step = -1;\n", " }\n", " on_mouse_event_closure('scroll')(event);\n", " });\n", "\n", " canvas_div.appendChild(canvas);\n", " canvas_div.appendChild(rubberband_canvas);\n", "\n", " this.rubberband_context = rubberband_canvas.getContext('2d');\n", " this.rubberband_context.strokeStyle = '#000000';\n", "\n", " this._resize_canvas = function (width, height, forward) {\n", " if (forward) {\n", " canvas_div.style.width = width + 'px';\n", " canvas_div.style.height = height + 'px';\n", " }\n", " };\n", "\n", " // Disable right mouse context menu.\n", " this.rubberband_canvas.addEventListener('contextmenu', function (_e) {\n", " event.preventDefault();\n", " return false;\n", " });\n", "\n", " function set_focus() {\n", " canvas.focus();\n", " canvas_div.focus();\n", " }\n", "\n", " window.setTimeout(set_focus, 100);\n", "};\n", "\n", "mpl.figure.prototype._init_toolbar = function () {\n", " var fig = this;\n", "\n", " var toolbar = document.createElement('div');\n", " toolbar.classList = 'mpl-toolbar';\n", " this.root.appendChild(toolbar);\n", "\n", " function on_click_closure(name) {\n", " return function (_event) {\n", " return fig.toolbar_button_onclick(name);\n", " };\n", " }\n", "\n", " function on_mouseover_closure(tooltip) {\n", " return function (event) {\n", " if (!event.currentTarget.disabled) {\n", " return fig.toolbar_button_onmouseover(tooltip);\n", " }\n", " };\n", " }\n", "\n", " fig.buttons = {};\n", " var buttonGroup = document.createElement('div');\n", " buttonGroup.classList = 'mpl-button-group';\n", " for (var toolbar_ind in mpl.toolbar_items) {\n", " var name = mpl.toolbar_items[toolbar_ind][0];\n", " var tooltip = mpl.toolbar_items[toolbar_ind][1];\n", " var image = mpl.toolbar_items[toolbar_ind][2];\n", " var method_name = mpl.toolbar_items[toolbar_ind][3];\n", "\n", " if (!name) {\n", " /* Instead of a spacer, we start a new button group. */\n", " if (buttonGroup.hasChildNodes()) {\n", " toolbar.appendChild(buttonGroup);\n", " }\n", " buttonGroup = document.createElement('div');\n", " buttonGroup.classList = 'mpl-button-group';\n", " continue;\n", " }\n", "\n", " var button = (fig.buttons[name] = document.createElement('button'));\n", " button.classList = 'mpl-widget';\n", " button.setAttribute('role', 'button');\n", " button.setAttribute('aria-disabled', 'false');\n", " button.addEventListener('click', on_click_closure(method_name));\n", " button.addEventListener('mouseover', on_mouseover_closure(tooltip));\n", "\n", " var icon_img = document.createElement('img');\n", " icon_img.src = '_images/' + image + '.png';\n", " icon_img.srcset = '_images/' + image + '_large.png 2x';\n", " icon_img.alt = tooltip;\n", " button.appendChild(icon_img);\n", "\n", " buttonGroup.appendChild(button);\n", " }\n", "\n", " if (buttonGroup.hasChildNodes()) {\n", " toolbar.appendChild(buttonGroup);\n", " }\n", "\n", " var fmt_picker = document.createElement('select');\n", " fmt_picker.classList = 'mpl-widget';\n", " toolbar.appendChild(fmt_picker);\n", " this.format_dropdown = fmt_picker;\n", "\n", " for (var ind in mpl.extensions) {\n", " var fmt = mpl.extensions[ind];\n", " var option = document.createElement('option');\n", " option.selected = fmt === mpl.default_extension;\n", " option.innerHTML = fmt;\n", " fmt_picker.appendChild(option);\n", " }\n", "\n", " var status_bar = document.createElement('span');\n", " status_bar.classList = 'mpl-message';\n", " toolbar.appendChild(status_bar);\n", " this.message = status_bar;\n", "};\n", "\n", "mpl.figure.prototype.request_resize = function (x_pixels, y_pixels) {\n", " // Request matplotlib to resize the figure. Matplotlib will then trigger a resize in the client,\n", " // which will in turn request a refresh of the image.\n", " this.send_message('resize', { width: x_pixels, height: y_pixels });\n", "};\n", "\n", "mpl.figure.prototype.send_message = function (type, properties) {\n", " properties['type'] = type;\n", " properties['figure_id'] = this.id;\n", " this.ws.send(JSON.stringify(properties));\n", "};\n", "\n", "mpl.figure.prototype.send_draw_message = function () {\n", " if (!this.waiting) {\n", " this.waiting = true;\n", " this.ws.send(JSON.stringify({ type: 'draw', figure_id: this.id }));\n", " }\n", "};\n", "\n", "mpl.figure.prototype.handle_save = function (fig, _msg) {\n", " var format_dropdown = fig.format_dropdown;\n", " var format = format_dropdown.options[format_dropdown.selectedIndex].value;\n", " fig.ondownload(fig, format);\n", "};\n", "\n", "mpl.figure.prototype.handle_resize = function (fig, msg) {\n", " var size = msg['size'];\n", " if (size[0] !== fig.canvas.width || size[1] !== fig.canvas.height) {\n", " fig._resize_canvas(size[0], size[1], msg['forward']);\n", " fig.send_message('refresh', {});\n", " }\n", "};\n", "\n", "mpl.figure.prototype.handle_rubberband = function (fig, msg) {\n", " var x0 = msg['x0'] / fig.ratio;\n", " var y0 = (fig.canvas.height - msg['y0']) / fig.ratio;\n", " var x1 = msg['x1'] / fig.ratio;\n", " var y1 = (fig.canvas.height - msg['y1']) / fig.ratio;\n", " x0 = Math.floor(x0) + 0.5;\n", " y0 = Math.floor(y0) + 0.5;\n", " x1 = Math.floor(x1) + 0.5;\n", " y1 = Math.floor(y1) + 0.5;\n", " var min_x = Math.min(x0, x1);\n", " var min_y = Math.min(y0, y1);\n", " var width = Math.abs(x1 - x0);\n", " var height = Math.abs(y1 - y0);\n", "\n", " fig.rubberband_context.clearRect(\n", " 0,\n", " 0,\n", " fig.canvas.width / fig.ratio,\n", " fig.canvas.height / fig.ratio\n", " );\n", "\n", " fig.rubberband_context.strokeRect(min_x, min_y, width, height);\n", "};\n", "\n", "mpl.figure.prototype.handle_figure_label = function (fig, msg) {\n", " // Updates the figure title.\n", " fig.header.textContent = msg['label'];\n", "};\n", "\n", "mpl.figure.prototype.handle_cursor = function (fig, msg) {\n", " fig.rubberband_canvas.style.cursor = msg['cursor'];\n", "};\n", "\n", "mpl.figure.prototype.handle_message = function (fig, msg) {\n", " fig.message.textContent = msg['message'];\n", "};\n", "\n", "mpl.figure.prototype.handle_draw = function (fig, _msg) {\n", " // Request the server to send over a new figure.\n", " fig.send_draw_message();\n", "};\n", "\n", "mpl.figure.prototype.handle_image_mode = function (fig, msg) {\n", " fig.image_mode = msg['mode'];\n", "};\n", "\n", "mpl.figure.prototype.handle_history_buttons = function (fig, msg) {\n", " for (var key in msg) {\n", " if (!(key in fig.buttons)) {\n", " continue;\n", " }\n", " fig.buttons[key].disabled = !msg[key];\n", " fig.buttons[key].setAttribute('aria-disabled', !msg[key]);\n", " }\n", "};\n", "\n", "mpl.figure.prototype.handle_navigate_mode = function (fig, msg) {\n", " if (msg['mode'] === 'PAN') {\n", " fig.buttons['Pan'].classList.add('active');\n", " fig.buttons['Zoom'].classList.remove('active');\n", " } else if (msg['mode'] === 'ZOOM') {\n", " fig.buttons['Pan'].classList.remove('active');\n", " fig.buttons['Zoom'].classList.add('active');\n", " } else {\n", " fig.buttons['Pan'].classList.remove('active');\n", " fig.buttons['Zoom'].classList.remove('active');\n", " }\n", "};\n", "\n", "mpl.figure.prototype.updated_canvas_event = function () {\n", " // Called whenever the canvas gets updated.\n", " this.send_message('ack', {});\n", "};\n", "\n", "// A function to construct a web socket function for onmessage handling.\n", "// Called in the figure constructor.\n", "mpl.figure.prototype._make_on_message_function = function (fig) {\n", " return function socket_on_message(evt) {\n", " if (evt.data instanceof Blob) {\n", " var img = evt.data;\n", " if (img.type !== 'image/png') {\n", " /* FIXME: We get \"Resource interpreted as Image but\n", " * transferred with MIME type text/plain:\" errors on\n", " * Chrome. But how to set the MIME type? It doesn't seem\n", " * to be part of the websocket stream */\n", " img.type = 'image/png';\n", " }\n", "\n", " /* Free the memory for the previous frames */\n", " if (fig.imageObj.src) {\n", " (window.URL || window.webkitURL).revokeObjectURL(\n", " fig.imageObj.src\n", " );\n", " }\n", "\n", " fig.imageObj.src = (window.URL || window.webkitURL).createObjectURL(\n", " img\n", " );\n", " fig.updated_canvas_event();\n", " fig.waiting = false;\n", " return;\n", " } else if (\n", " typeof evt.data === 'string' &&\n", " evt.data.slice(0, 21) === 'data:image/png;base64'\n", " ) {\n", " fig.imageObj.src = evt.data;\n", " fig.updated_canvas_event();\n", " fig.waiting = false;\n", " return;\n", " }\n", "\n", " var msg = JSON.parse(evt.data);\n", " var msg_type = msg['type'];\n", "\n", " // Call the \"handle_{type}\" callback, which takes\n", " // the figure and JSON message as its only arguments.\n", " try {\n", " var callback = fig['handle_' + msg_type];\n", " } catch (e) {\n", " console.log(\n", " \"No handler for the '\" + msg_type + \"' message type: \",\n", " msg\n", " );\n", " return;\n", " }\n", "\n", " if (callback) {\n", " try {\n", " // console.log(\"Handling '\" + msg_type + \"' message: \", msg);\n", " callback(fig, msg);\n", " } catch (e) {\n", " console.log(\n", " \"Exception inside the 'handler_\" + msg_type + \"' callback:\",\n", " e,\n", " e.stack,\n", " msg\n", " );\n", " }\n", " }\n", " };\n", "};\n", "\n", "// from https://stackoverflow.com/questions/1114465/getting-mouse-location-in-canvas\n", "mpl.findpos = function (e) {\n", " //this section is from http://www.quirksmode.org/js/events_properties.html\n", " var targ;\n", " if (!e) {\n", " e = window.event;\n", " }\n", " if (e.target) {\n", " targ = e.target;\n", " } else if (e.srcElement) {\n", " targ = e.srcElement;\n", " }\n", " if (targ.nodeType === 3) {\n", " // defeat Safari bug\n", " targ = targ.parentNode;\n", " }\n", "\n", " // pageX,Y are the mouse positions relative to the document\n", " var boundingRect = targ.getBoundingClientRect();\n", " var x = e.pageX - (boundingRect.left + document.body.scrollLeft);\n", " var y = e.pageY - (boundingRect.top + document.body.scrollTop);\n", "\n", " return { x: x, y: y };\n", "};\n", "\n", "/*\n", " * return a copy of an object with only non-object keys\n", " * we need this to avoid circular references\n", " * https://stackoverflow.com/a/24161582/3208463\n", " */\n", "function simpleKeys(original) {\n", " return Object.keys(original).reduce(function (obj, key) {\n", " if (typeof original[key] !== 'object') {\n", " obj[key] = original[key];\n", " }\n", " return obj;\n", " }, {});\n", "}\n", "\n", "mpl.figure.prototype.mouse_event = function (event, name) {\n", " var canvas_pos = mpl.findpos(event);\n", "\n", " if (name === 'button_press') {\n", " this.canvas.focus();\n", " this.canvas_div.focus();\n", " }\n", "\n", " var x = canvas_pos.x * this.ratio;\n", " var y = canvas_pos.y * this.ratio;\n", "\n", " this.send_message(name, {\n", " x: x,\n", " y: y,\n", " button: event.button,\n", " step: event.step,\n", " guiEvent: simpleKeys(event),\n", " });\n", "\n", " /* This prevents the web browser from automatically changing to\n", " * the text insertion cursor when the button is pressed. We want\n", " * to control all of the cursor setting manually through the\n", " * 'cursor' event from matplotlib */\n", " event.preventDefault();\n", " return false;\n", "};\n", "\n", "mpl.figure.prototype._key_event_extra = function (_event, _name) {\n", " // Handle any extra behaviour associated with a key event\n", "};\n", "\n", "mpl.figure.prototype.key_event = function (event, name) {\n", " // Prevent repeat events\n", " if (name === 'key_press') {\n", " if (event.key === this._key) {\n", " return;\n", " } else {\n", " this._key = event.key;\n", " }\n", " }\n", " if (name === 'key_release') {\n", " this._key = null;\n", " }\n", "\n", " var value = '';\n", " if (event.ctrlKey && event.key !== 'Control') {\n", " value += 'ctrl+';\n", " }\n", " else if (event.altKey && event.key !== 'Alt') {\n", " value += 'alt+';\n", " }\n", " else if (event.shiftKey && event.key !== 'Shift') {\n", " value += 'shift+';\n", " }\n", "\n", " value += 'k' + event.key;\n", "\n", " this._key_event_extra(event, name);\n", "\n", " this.send_message(name, { key: value, guiEvent: simpleKeys(event) });\n", " return false;\n", "};\n", "\n", "mpl.figure.prototype.toolbar_button_onclick = function (name) {\n", " if (name === 'download') {\n", " this.handle_save(this, null);\n", " } else {\n", " this.send_message('toolbar_button', { name: name });\n", " }\n", "};\n", "\n", "mpl.figure.prototype.toolbar_button_onmouseover = function (tooltip) {\n", " this.message.textContent = tooltip;\n", "};\n", "\n", "///////////////// REMAINING CONTENT GENERATED BY embed_js.py /////////////////\n", "// prettier-ignore\n", "var _JSXTOOLS_RESIZE_OBSERVER=function(A){var t,i=new WeakMap,n=new WeakMap,a=new WeakMap,r=new WeakMap,o=new Set;function s(e){if(!(this instanceof s))throw new TypeError(\"Constructor requires 'new' operator\");i.set(this,e)}function h(){throw new TypeError(\"Function is not a constructor\")}function c(e,t,i,n){e=0 in arguments?Number(arguments[0]):0,t=1 in arguments?Number(arguments[1]):0,i=2 in arguments?Number(arguments[2]):0,n=3 in arguments?Number(arguments[3]):0,this.right=(this.x=this.left=e)+(this.width=i),this.bottom=(this.y=this.top=t)+(this.height=n),Object.freeze(this)}function d(){t=requestAnimationFrame(d);var s=new WeakMap,p=new Set;o.forEach((function(t){r.get(t).forEach((function(i){var r=t instanceof window.SVGElement,o=a.get(t),d=r?0:parseFloat(o.paddingTop),f=r?0:parseFloat(o.paddingRight),l=r?0:parseFloat(o.paddingBottom),u=r?0:parseFloat(o.paddingLeft),g=r?0:parseFloat(o.borderTopWidth),m=r?0:parseFloat(o.borderRightWidth),w=r?0:parseFloat(o.borderBottomWidth),b=u+f,F=d+l,v=(r?0:parseFloat(o.borderLeftWidth))+m,W=g+w,y=r?0:t.offsetHeight-W-t.clientHeight,E=r?0:t.offsetWidth-v-t.clientWidth,R=b+v,z=F+W,M=r?t.width:parseFloat(o.width)-R-E,O=r?t.height:parseFloat(o.height)-z-y;if(n.has(t)){var k=n.get(t);if(k[0]===M&&k[1]===O)return}n.set(t,[M,O]);var S=Object.create(h.prototype);S.target=t,S.contentRect=new c(u,d,M,O),s.has(i)||(s.set(i,[]),p.add(i)),s.get(i).push(S)}))})),p.forEach((function(e){i.get(e).call(e,s.get(e),e)}))}return s.prototype.observe=function(i){if(i instanceof window.Element){r.has(i)||(r.set(i,new Set),o.add(i),a.set(i,window.getComputedStyle(i)));var n=r.get(i);n.has(this)||n.add(this),cancelAnimationFrame(t),t=requestAnimationFrame(d)}},s.prototype.unobserve=function(i){if(i instanceof window.Element&&r.has(i)){var n=r.get(i);n.has(this)&&(n.delete(this),n.size||(r.delete(i),o.delete(i))),n.size||r.delete(i),o.size||cancelAnimationFrame(t)}},A.DOMRectReadOnly=c,A.ResizeObserver=s,A.ResizeObserverEntry=h,A}; // eslint-disable-line\n", "mpl.toolbar_items = [[\"Home\", \"Reset original view\", \"fa fa-home\", \"home\"], [\"Back\", \"Back to previous view\", \"fa fa-arrow-left\", \"back\"], [\"Forward\", \"Forward to next view\", \"fa fa-arrow-right\", \"forward\"], [\"\", \"\", \"\", \"\"], [\"Pan\", \"Left button pans, Right button zooms\\nx/y fixes axis, CTRL fixes aspect\", \"fa fa-arrows\", \"pan\"], [\"Zoom\", \"Zoom to rectangle\\nx/y fixes axis\", \"fa fa-square-o\", \"zoom\"], [\"\", \"\", \"\", \"\"], [\"Download\", \"Download plot\", \"fa fa-floppy-o\", \"download\"]];\n", "\n", "mpl.extensions = [\"eps\", \"jpeg\", \"pgf\", \"pdf\", \"png\", \"ps\", \"raw\", \"svg\", \"tif\", \"webp\"];\n", "\n", "mpl.default_extension = \"png\";/* global mpl */\n", "\n", "var comm_websocket_adapter = function (comm) {\n", " // Create a \"websocket\"-like object which calls the given IPython comm\n", " // object with the appropriate methods. Currently this is a non binary\n", " // socket, so there is still some room for performance tuning.\n", " var ws = {};\n", "\n", " ws.binaryType = comm.kernel.ws.binaryType;\n", " ws.readyState = comm.kernel.ws.readyState;\n", " function updateReadyState(_event) {\n", " if (comm.kernel.ws) {\n", " ws.readyState = comm.kernel.ws.readyState;\n", " } else {\n", " ws.readyState = 3; // Closed state.\n", " }\n", " }\n", " comm.kernel.ws.addEventListener('open', updateReadyState);\n", " comm.kernel.ws.addEventListener('close', updateReadyState);\n", " comm.kernel.ws.addEventListener('error', updateReadyState);\n", "\n", " ws.close = function () {\n", " comm.close();\n", " };\n", " ws.send = function (m) {\n", " //console.log('sending', m);\n", " comm.send(m);\n", " };\n", " // Register the callback with on_msg.\n", " comm.on_msg(function (msg) {\n", " //console.log('receiving', msg['content']['data'], msg);\n", " var data = msg['content']['data'];\n", " if (data['blob'] !== undefined) {\n", " data = {\n", " data: new Blob(msg['buffers'], { type: data['blob'] }),\n", " };\n", " }\n", " // Pass the mpl event to the overridden (by mpl) onmessage function.\n", " ws.onmessage(data);\n", " });\n", " return ws;\n", "};\n", "\n", "mpl.mpl_figure_comm = function (comm, msg) {\n", " // This is the function which gets called when the mpl process\n", " // starts-up an IPython Comm through the \"matplotlib\" channel.\n", "\n", " var id = msg.content.data.id;\n", " // Get hold of the div created by the display call when the Comm\n", " // socket was opened in Python.\n", " var element = document.getElementById(id);\n", " var ws_proxy = comm_websocket_adapter(comm);\n", "\n", " function ondownload(figure, _format) {\n", " window.open(figure.canvas.toDataURL());\n", " }\n", "\n", " var fig = new mpl.figure(id, ws_proxy, ondownload, element);\n", "\n", " // Call onopen now - mpl needs it, as it is assuming we've passed it a real\n", " // web socket which is closed, not our websocket->open comm proxy.\n", " ws_proxy.onopen();\n", "\n", " fig.parent_element = element;\n", " fig.cell_info = mpl.find_output_cell(\"
\");\n", " if (!fig.cell_info) {\n", " console.error('Failed to find cell for figure', id, fig);\n", " return;\n", " }\n", " fig.cell_info[0].output_area.element.on(\n", " 'cleared',\n", " { fig: fig },\n", " fig._remove_fig_handler\n", " );\n", "};\n", "\n", "mpl.figure.prototype.handle_close = function (fig, msg) {\n", " var width = fig.canvas.width / fig.ratio;\n", " fig.cell_info[0].output_area.element.off(\n", " 'cleared',\n", " fig._remove_fig_handler\n", " );\n", " fig.resizeObserverInstance.unobserve(fig.canvas_div);\n", "\n", " // Update the output cell to use the data from the current canvas.\n", " fig.push_to_output();\n", " var dataURL = fig.canvas.toDataURL();\n", " // Re-enable the keyboard manager in IPython - without this line, in FF,\n", " // the notebook keyboard shortcuts fail.\n", " IPython.keyboard_manager.enable();\n", " fig.parent_element.innerHTML =\n", " '';\n", " fig.close_ws(fig, msg);\n", "};\n", "\n", "mpl.figure.prototype.close_ws = function (fig, msg) {\n", " fig.send_message('closing', msg);\n", " // fig.ws.close()\n", "};\n", "\n", "mpl.figure.prototype.push_to_output = function (_remove_interactive) {\n", " // Turn the data on the canvas into data in the output cell.\n", " var width = this.canvas.width / this.ratio;\n", " var dataURL = this.canvas.toDataURL();\n", " this.cell_info[1]['text/html'] =\n", " '';\n", "};\n", "\n", "mpl.figure.prototype.updated_canvas_event = function () {\n", " // Tell IPython that the notebook contents must change.\n", " IPython.notebook.set_dirty(true);\n", " this.send_message('ack', {});\n", " var fig = this;\n", " // Wait a second, then push the new image to the DOM so\n", " // that it is saved nicely (might be nice to debounce this).\n", " setTimeout(function () {\n", " fig.push_to_output();\n", " }, 1000);\n", "};\n", "\n", "mpl.figure.prototype._init_toolbar = function () {\n", " var fig = this;\n", "\n", " var toolbar = document.createElement('div');\n", " toolbar.classList = 'btn-toolbar';\n", " this.root.appendChild(toolbar);\n", "\n", " function on_click_closure(name) {\n", " return function (_event) {\n", " return fig.toolbar_button_onclick(name);\n", " };\n", " }\n", "\n", " function on_mouseover_closure(tooltip) {\n", " return function (event) {\n", " if (!event.currentTarget.disabled) {\n", " return fig.toolbar_button_onmouseover(tooltip);\n", " }\n", " };\n", " }\n", "\n", " fig.buttons = {};\n", " var buttonGroup = document.createElement('div');\n", " buttonGroup.classList = 'btn-group';\n", " var button;\n", " for (var toolbar_ind in mpl.toolbar_items) {\n", " var name = mpl.toolbar_items[toolbar_ind][0];\n", " var tooltip = mpl.toolbar_items[toolbar_ind][1];\n", " var image = mpl.toolbar_items[toolbar_ind][2];\n", " var method_name = mpl.toolbar_items[toolbar_ind][3];\n", "\n", " if (!name) {\n", " /* Instead of a spacer, we start a new button group. */\n", " if (buttonGroup.hasChildNodes()) {\n", " toolbar.appendChild(buttonGroup);\n", " }\n", " buttonGroup = document.createElement('div');\n", " buttonGroup.classList = 'btn-group';\n", " continue;\n", " }\n", "\n", " button = fig.buttons[name] = document.createElement('button');\n", " button.classList = 'btn btn-default';\n", " button.href = '#';\n", " button.title = name;\n", " button.innerHTML = '';\n", " button.addEventListener('click', on_click_closure(method_name));\n", " button.addEventListener('mouseover', on_mouseover_closure(tooltip));\n", " buttonGroup.appendChild(button);\n", " }\n", "\n", " if (buttonGroup.hasChildNodes()) {\n", " toolbar.appendChild(buttonGroup);\n", " }\n", "\n", " // Add the status bar.\n", " var status_bar = document.createElement('span');\n", " status_bar.classList = 'mpl-message pull-right';\n", " toolbar.appendChild(status_bar);\n", " this.message = status_bar;\n", "\n", " // Add the close button to the window.\n", " var buttongrp = document.createElement('div');\n", " buttongrp.classList = 'btn-group inline pull-right';\n", " button = document.createElement('button');\n", " button.classList = 'btn btn-mini btn-primary';\n", " button.href = '#';\n", " button.title = 'Stop Interaction';\n", " button.innerHTML = '';\n", " button.addEventListener('click', function (_evt) {\n", " fig.handle_close(fig, {});\n", " });\n", " button.addEventListener(\n", " 'mouseover',\n", " on_mouseover_closure('Stop Interaction')\n", " );\n", " buttongrp.appendChild(button);\n", " var titlebar = this.root.querySelector('.ui-dialog-titlebar');\n", " titlebar.insertBefore(buttongrp, titlebar.firstChild);\n", "};\n", "\n", "mpl.figure.prototype._remove_fig_handler = function (event) {\n", " var fig = event.data.fig;\n", " if (event.target !== this) {\n", " // Ignore bubbled events from children.\n", " return;\n", " }\n", " fig.close_ws(fig, {});\n", "};\n", "\n", "mpl.figure.prototype._root_extra_style = function (el) {\n", " el.style.boxSizing = 'content-box'; // override notebook setting of border-box.\n", "};\n", "\n", "mpl.figure.prototype._canvas_extra_style = function (el) {\n", " // this is important to make the div 'focusable\n", " el.setAttribute('tabindex', 0);\n", " // reach out to IPython and tell the keyboard manager to turn it's self\n", " // off when our div gets focus\n", "\n", " // location in version 3\n", " if (IPython.notebook.keyboard_manager) {\n", " IPython.notebook.keyboard_manager.register_events(el);\n", " } else {\n", " // location in version 2\n", " IPython.keyboard_manager.register_events(el);\n", " }\n", "};\n", "\n", "mpl.figure.prototype._key_event_extra = function (event, _name) {\n", " // Check for shift+enter\n", " if (event.shiftKey && event.which === 13) {\n", " this.canvas_div.blur();\n", " // select the cell after this one\n", " var index = IPython.notebook.find_cell_index(this.cell_info[0]);\n", " IPython.notebook.select(index + 1);\n", " }\n", "};\n", "\n", "mpl.figure.prototype.handle_save = function (fig, _msg) {\n", " fig.ondownload(fig, null);\n", "};\n", "\n", "mpl.find_output_cell = function (html_output) {\n", " // Return the cell and output element which can be found *uniquely* in the notebook.\n", " // Note - this is a bit hacky, but it is done because the \"notebook_saving.Notebook\"\n", " // IPython event is triggered only after the cells have been serialised, which for\n", " // our purposes (turning an active figure into a static one), is too late.\n", " var cells = IPython.notebook.get_cells();\n", " var ncells = cells.length;\n", " for (var i = 0; i < ncells; i++) {\n", " var cell = cells[i];\n", " if (cell.cell_type === 'code') {\n", " for (var j = 0; j < cell.output_area.outputs.length; j++) {\n", " var data = cell.output_area.outputs[j];\n", " if (data.data) {\n", " // IPython >= 3 moved mimebundle to data attribute of output\n", " data = data.data;\n", " }\n", " if (data['text/html'] === html_output) {\n", " return [cell, data, j];\n", " }\n", " }\n", " }\n", " }\n", "};\n", "\n", "// Register the function which deals with the matplotlib target/channel.\n", "// The kernel may be null if the page has been refreshed.\n", "if (IPython.notebook.kernel !== null) {\n", " IPython.notebook.kernel.comm_manager.register_target(\n", " 'matplotlib',\n", " mpl.mpl_figure_comm\n", " );\n", "}\n" ], "text/plain": [ "" ] }, "metadata": {}, "output_type": "display_data" }, { "data": { "text/html": [ "" ], "text/plain": [ "" ] }, "metadata": {}, "output_type": "display_data" } ], "source": [ "fig, axs = plt.subplots(ncols=3, figsize=(9, 3), sharey=True, sharex=True)\n", "fig.subplots_adjust(wspace=0)\n", "for m, k in enumerate(ids):\n", " r200 = cat[n][\"r200\"][k]\n", " m200 = cat[n][\"m200\"][k]\n", " \n", " axs[m].set_title(r\"$\\log M_{{200c}} / M_\\odot = {:.3f}$\".format(np.log10(m200)))\n", " for i, j in enumerate(matcher.search_sim_indices(n)):\n", " indxs, dist = match[i]\n", " indxs = indxs[k]\n", " dist = dist[k]\n", "\n", " dlogmass = np.abs(np.log10(cat[j][\"m200\"][indxs] / m200))\n", " axs[m].scatter(dist / r200, dlogmass)\n", " \n", " \n", "for i in range(3):\n", " axs[i].set_xlabel(r\"$\\Delta r_i / R_{200c}$\")\n", "axs[0].set_ylabel(r\"$|\\log \\dfrac{M_i}{M_{200c}}|$\")\n", "plt.tight_layout(w_pad=0)\n", "# plt.savefig(\"../plots/lowest_massive.png\", dpi=450)\n", "fig.show()" ] }, { "cell_type": "code", "execution_count": null, "id": "f0f59246", "metadata": {}, "outputs": [], "source": [] }, { "cell_type": "code", "execution_count": null, "id": "a25c7146", "metadata": {}, "outputs": [], "source": [] }, { "cell_type": "code", "execution_count": null, "id": "e2930abd", "metadata": { "ExecuteTime": { "end_time": "2022-11-21T10:56:11.296860Z", "start_time": "2022-11-21T10:56:10.813212Z" } }, "outputs": [], "source": [ "plt.figure()\n", "for k in range(cat.N-1):\n", " plt.scatter(x[k, :, 1], x[k, :, 2])\n", "\n", " \n", "plt.xlabel(r\"$\\Delta r_i / R_{200c}$\")\n", "plt.ylabel(r\"$|\\log \\dfrac{M_i}{M_{200c}}|$\")\n", "plt.savefig(\"../plots/example.png\", dpi=450)\n", "plt.show()" ] }, { "cell_type": "code", "execution_count": null, "id": "5101f569", "metadata": { "ExecuteTime": { "end_time": "2022-11-21T10:36:59.128848Z", "start_time": "2022-11-21T10:36:58.543085Z" } }, "outputs": [], "source": [ "x[:, 0, 2]" ] }, { "cell_type": "code", "execution_count": null, "id": "6794c154", "metadata": {}, "outputs": [], "source": [] }, { "cell_type": "code", "execution_count": null, "id": "aa252ad3", "metadata": { "ExecuteTime": { "end_time": "2022-11-21T07:38:33.029175Z", "start_time": "2022-11-21T07:38:32.649968Z" } }, "outputs": [], "source": [ "cat.cross_knn_position(0, 0)" ] }, { "cell_type": "code", "execution_count": null, "id": "8dc14292", "metadata": {}, "outputs": [], "source": [] }, { "cell_type": "code", "execution_count": null, "id": "9f7cd638", "metadata": {}, "outputs": [], "source": [] }, { "cell_type": "code", "execution_count": null, "id": "d655f5de", "metadata": {}, "outputs": [], "source": [] }, { "cell_type": "code", "execution_count": null, "id": "9894fd1a", "metadata": {}, "outputs": [], "source": [] }, { "cell_type": "code", "execution_count": null, "id": "41c21c3c", "metadata": { "ExecuteTime": { "end_time": "2022-11-21T07:05:14.278302Z", "start_time": "2022-11-21T07:05:14.249214Z" } }, "outputs": [], "source": [ "x = cat.positions[6, :].reshape(-1, 3)\n", "\n", "\n", "# x = np.asarray([0., 0., 0.]).reshape(-1, 3)" ] }, { "cell_type": "code", "execution_count": null, "id": "440c00a3", "metadata": { "ExecuteTime": { "end_time": "2022-11-21T07:07:55.025995Z", "start_time": "2022-11-21T07:07:54.988489Z" } }, "outputs": [], "source": [ "cat.knn_position(x, 5)" ] }, { "cell_type": "code", "execution_count": null, "id": "6c510eca", "metadata": {}, "outputs": [], "source": [] }, { "cell_type": "code", "execution_count": null, "id": "c59341c0", "metadata": { "ExecuteTime": { "end_time": "2022-11-21T06:55:17.697688Z", "start_time": "2022-11-21T06:55:17.667672Z" } }, "outputs": [], "source": [ "dist, knns = cat.knn_position([5, 9], 5)" ] }, { "cell_type": "code", "execution_count": null, "id": "004c5a79", "metadata": { "ExecuteTime": { "end_time": "2022-11-21T06:55:40.505297Z", "start_time": "2022-11-21T06:55:40.475623Z" } }, "outputs": [], "source": [ "dist" ] }, { "cell_type": "code", "execution_count": null, "id": "efcc87ac", "metadata": { "ExecuteTime": { "end_time": "2022-11-21T06:55:47.645798Z", "start_time": "2022-11-21T06:55:47.615986Z" } }, "outputs": [], "source": [ "knns" ] }, { "cell_type": "code", "execution_count": null, "id": "9bf75953", "metadata": { "ExecuteTime": { "end_time": "2022-11-21T06:27:19.883364Z", "start_time": "2022-11-21T06:27:19.435813Z" } }, "outputs": [], "source": [ "model = NearestNeighbors()" ] }, { "cell_type": "code", "execution_count": null, "id": "3e751553", "metadata": { "ExecuteTime": { "end_time": "2022-11-21T06:27:38.874030Z", "start_time": "2022-11-21T06:27:38.663757Z" } }, "outputs": [], "source": [ "model.fit(cat[0].positions)" ] }, { "cell_type": "code", "execution_count": null, "id": "a8cb2bcf", "metadata": { "ExecuteTime": { "end_time": "2022-11-21T06:37:19.127300Z", "start_time": "2022-11-21T06:37:18.905607Z" } }, "outputs": [], "source": [ "p = cat[0].positions[:2, :].reshape(-1, 3)" ] }, { "cell_type": "code", "execution_count": null, "id": "ae96df81", "metadata": { "ExecuteTime": { "end_time": "2022-11-21T06:37:19.354558Z", "start_time": "2022-11-21T06:37:19.324845Z" } }, "outputs": [], "source": [ "p" ] }, { "cell_type": "code", "execution_count": null, "id": "1e7b3655", "metadata": { "ExecuteTime": { "end_time": "2022-11-21T06:37:20.172812Z", "start_time": "2022-11-21T06:37:20.141347Z" } }, "outputs": [], "source": [ "model.kneighbors(p, n_neighbors=2)" ] }, { "cell_type": "code", "execution_count": null, "id": "6d3bcb85", "metadata": {}, "outputs": [], "source": [] }, { "cell_type": "code", "execution_count": null, "id": "307f3b62", "metadata": {}, "outputs": [], "source": [] }, { "cell_type": "code", "execution_count": null, "id": "a885af97", "metadata": { "ExecuteTime": { "end_time": "2022-11-20T16:47:33.606111Z", "start_time": "2022-11-20T16:47:29.246847Z" } }, "outputs": [], "source": [ "cat = csiborgtools.io.HaloCatalogue(9844, 1016, minimum_m500=0)" ] }, { "cell_type": "code", "execution_count": null, "id": "2b73c9bc", "metadata": { "ExecuteTime": { "end_time": "2022-11-20T16:47:52.218696Z", "start_time": "2022-11-20T16:47:52.097392Z" } }, "outputs": [], "source": [ "cat[\"dec\"].size" ] }, { "cell_type": "code", "execution_count": null, "id": "bd76ed7a", "metadata": {}, "outputs": [], "source": [] }, { "cell_type": "code", "execution_count": null, "id": "22abdd5c", "metadata": { "ExecuteTime": { "end_time": "2022-11-20T15:15:05.423239Z", "start_time": "2022-11-20T15:15:05.366755Z" } }, "outputs": [], "source": [ "planck = csiborgtools.io.PlanckClusters(\"../data/HFI_PCCS_SZ-union_R2.08.fits\")" ] }, { "cell_type": "code", "execution_count": null, "id": "20855f15", "metadata": { "ExecuteTime": { "end_time": "2022-11-20T15:15:05.479763Z", "start_time": "2022-11-20T15:15:05.425076Z" } }, "outputs": [], "source": [ "mcxc = csiborgtools.io.MCXCClusters(\"../data/mcxc.fits\")" ] }, { "cell_type": "code", "execution_count": null, "id": "60e7d566", "metadata": { "ExecuteTime": { "end_time": "2022-11-20T15:15:38.743815Z", "start_time": "2022-11-20T15:15:38.663202Z" } }, "outputs": [], "source": [ "planck.match_to_mcxc(mcxc)" ] }, { "cell_type": "code", "execution_count": null, "id": "2941d725", "metadata": { "ExecuteTime": { "end_time": "2022-11-20T14:36:05.559176Z", "start_time": "2022-11-20T14:36:05.143516Z" } }, "outputs": [], "source": [ "planck[\"MSZ\"]" ] }, { "cell_type": "code", "execution_count": null, "id": "6347d993", "metadata": {}, "outputs": [], "source": [] }, { "cell_type": "code", "execution_count": null, "id": "43293c40", "metadata": { "ExecuteTime": { "end_time": "2022-11-20T14:34:56.350019Z", "start_time": "2022-11-20T14:34:56.292284Z" } }, "outputs": [], "source": [ "planck.data.dtype.names" ] }, { "cell_type": "code", "execution_count": null, "id": "509d4fbb", "metadata": { "ExecuteTime": { "end_time": "2022-11-20T17:00:49.100716Z", "start_time": "2022-11-20T17:00:48.529803Z" } }, "outputs": [], "source": [ "csiborgtools.io.get_csiborg_ids(\"/mnt/extraspace/hdesmond\")" ] }, { "cell_type": "code", "execution_count": null, "id": "f39874e4", "metadata": { "ExecuteTime": { "end_time": "2022-11-20T12:48:39.888076Z", "start_time": "2022-11-20T12:48:39.824849Z" } }, "outputs": [], "source": [ "from astropy.cosmology import FlatLambdaCDM, z_at_value\n", "from astropy import units" ] }, { "cell_type": "code", "execution_count": null, "id": "d243cc59", "metadata": { "ExecuteTime": { "end_time": "2022-11-20T12:48:50.480986Z", "start_time": "2022-11-20T12:48:46.442880Z" } }, "outputs": [], "source": [ "Nsim = 9844\n", "Nsnap = 1016\n", "# data, box = utils.load_processed(Nsim, Nsnap)\n", "data, box = utils.load_processed(Nsim, Nsnap)" ] }, { "cell_type": "code", "execution_count": null, "id": "344e6b96", "metadata": { "ExecuteTime": { "end_time": "2022-11-20T12:49:41.830512Z", "start_time": "2022-11-20T12:49:41.793552Z" } }, "outputs": [], "source": [ "X = np.vstack([data[\"peak_{}\".format(p)] for p in (\"x\", \"y\", \"z\")]).T" ] }, { "cell_type": "code", "execution_count": null, "id": "d8bb7dce", "metadata": { "ExecuteTime": { "end_time": "2022-11-20T12:51:00.688105Z", "start_time": "2022-11-20T12:51:00.262736Z" } }, "outputs": [], "source": [ "from sklearn.neighbors import NearestNeighbors" ] }, { "cell_type": "code", "execution_count": null, "id": "71026a85", "metadata": { "ExecuteTime": { "end_time": "2022-11-20T12:51:22.817846Z", "start_time": "2022-11-20T12:51:22.762451Z" } }, "outputs": [], "source": [ "neighbors = NearestNeighbors()" ] }, { "cell_type": "code", "execution_count": null, "id": "3ca4a7b7", "metadata": { "ExecuteTime": { "end_time": "2022-11-20T12:51:52.857117Z", "start_time": "2022-11-20T12:51:52.659741Z" } }, "outputs": [], "source": [ "neighbors.fit(X)" ] }, { "cell_type": "code", "execution_count": null, "id": "6e5ec9c8", "metadata": { "ExecuteTime": { "end_time": "2022-11-20T12:52:50.459988Z", "start_time": "2022-11-20T12:52:50.429353Z" } }, "outputs": [], "source": [ "p = X[0, :]\n", "\n", "neighbors.kneighbors(p.reshape(-1,3))" ] }, { "cell_type": "code", "execution_count": null, "id": "304d53aa", "metadata": { "ExecuteTime": { "end_time": "2022-11-20T12:52:31.826535Z", "start_time": "2022-11-20T12:52:31.796380Z" } }, "outputs": [], "source": [] }, { "cell_type": "code", "execution_count": null, "id": "a65dac24", "metadata": { "ExecuteTime": { "end_time": "2022-11-20T12:49:09.617079Z", "start_time": "2022-11-20T12:49:09.416602Z" } }, "outputs": [], "source": [ "data[\"peak_y\"]" ] }, { "cell_type": "code", "execution_count": null, "id": "45b638ac", "metadata": {}, "outputs": [], "source": [] }, { "cell_type": "code", "execution_count": null, "id": "26c64abc", "metadata": {}, "outputs": [], "source": [] }, { "cell_type": "code", "execution_count": null, "id": "07bc45e2", "metadata": { "ExecuteTime": { "end_time": "2022-11-18T15:18:08.182242Z", "start_time": "2022-11-18T15:18:08.106196Z" } }, "outputs": [], "source": [ "zcosmo = box.box2cosmoredshift(data[\"dist\"])\n", "z" ] }, { "cell_type": "code", "execution_count": null, "id": "adf5dbb6", "metadata": { "ExecuteTime": { "end_time": "2022-11-18T15:20:26.613020Z", "start_time": "2022-11-18T15:20:25.738527Z" } }, "outputs": [], "source": [ "zpec = box.box2pecredshift(*[data[p] for p in [\"vx\", \"vy\", \"vz\", \"peak_x\", \"peak_y\", \"peak_z\"]])\n", "zobs = box.box2obsredshift(*[data[p] for p in [\"vx\", \"vy\", \"vz\", \"peak_x\", \"peak_y\", \"peak_z\"]])" ] }, { "cell_type": "code", "execution_count": null, "id": "841bd579", "metadata": { "ExecuteTime": { "end_time": "2022-11-18T15:26:30.294302Z", "start_time": "2022-11-18T15:26:29.051227Z" } }, "outputs": [], "source": [ "m = zcosmo < 0.05\n", "\n", "plt.figure()\n", "\n", "# plt.scatter(zcosmo[m], zcosmo[m] - zobs[m], s=0.05)\n", "plt.scatter(zcosmo[m], zpec[m], s=0.05, rasterized=True)\n", "t = np.linspace(0, zcosmo[m].max())\n", "\n", "plt.axhline(0, c=\"red\", ls=\"--\")\n", "\n", "plt.xlabel(r\"$z_{\\rm cosmo}$\")\n", "plt.ylabel(r\"$z_{\\rm pec}$\")\n", "plt.tight_layout()\n", "plt.savefig(\"../plots/redshift.png\", dpi=450)\n", "plt.show()" ] }, { "cell_type": "code", "execution_count": null, "id": "b4f27150", "metadata": {}, "outputs": [], "source": [] }, { "cell_type": "code", "execution_count": null, "id": "842b2a29", "metadata": {}, "outputs": [], "source": [] }, { "cell_type": "code", "execution_count": null, "id": "1540f703", "metadata": {}, "outputs": [], "source": [] }, { "cell_type": "code", "execution_count": null, "id": "990e9b54", "metadata": {}, "outputs": [], "source": [] }, { "cell_type": "code", "execution_count": null, "id": "72c00ec7", "metadata": { "ExecuteTime": { "end_time": "2022-11-18T13:52:31.564378Z", "start_time": "2022-11-18T13:52:31.208987Z" } }, "outputs": [], "source": [ "data[\"\"]" ] }, { "cell_type": "code", "execution_count": null, "id": "41d9b43b", "metadata": {}, "outputs": [], "source": [] }, { "cell_type": "code", "execution_count": null, "id": "da80d88a", "metadata": {}, "outputs": [], "source": [] }, { "cell_type": "code", "execution_count": null, "id": "a0cfe3e9", "metadata": {}, "outputs": [], "source": [] }, { "cell_type": "code", "execution_count": null, "id": "cced3507", "metadata": { "ExecuteTime": { "end_time": "2022-11-18T10:38:41.921571Z", "start_time": "2022-11-18T10:38:41.546722Z" } }, "outputs": [], "source": [ "cosmo = FlatLambdaCDM(H0=70, Om0=0.3, Ob0=0.05)\n", "\n", "cosmo.comoving_distance()\n", "\n", "x = 10000 * units.Mpc\n", "\n", "z_at_value(cosmo.comoving_distance, x)" ] }, { "cell_type": "code", "execution_count": null, "id": "efe4bae7", "metadata": { "ExecuteTime": { "end_time": "2022-11-18T10:54:22.472019Z", "start_time": "2022-11-18T10:54:21.945010Z" } }, "outputs": [], "source": [ "from astropy import constants" ] }, { "cell_type": "code", "execution_count": null, "id": "3b3868ec", "metadata": { "ExecuteTime": { "end_time": "2022-11-18T10:54:45.746052Z", "start_time": "2022-11-18T10:54:45.700198Z" } }, "outputs": [], "source": [ "constants.c.value * 1e-8" ] }, { "cell_type": "code", "execution_count": null, "id": "b4a75a77", "metadata": { "ExecuteTime": { "end_time": "2022-11-14T16:10:20.623153Z", "start_time": "2022-11-14T16:10:20.196639Z" } }, "outputs": [], "source": [ "n_sims = csiborgtools.io.get_csiborg_ids(\"/mnt/extraspace/hdesmond\")" ] }, { "cell_type": "code", "execution_count": null, "id": "90c6750f", "metadata": { "ExecuteTime": { "end_time": "2022-11-14T16:12:35.876806Z", "start_time": "2022-11-14T16:12:35.846171Z" } }, "outputs": [], "source": [ "np.where(n_sims == 7660)" ] }, { "cell_type": "code", "execution_count": null, "id": "2dc01da8", "metadata": { "ExecuteTime": { "end_time": "2022-11-14T16:15:52.261474Z", "start_time": "2022-11-14T16:15:50.624885Z" } }, "outputs": [], "source": [ "for n_sim in n_sims:\n", " simpath = csiborgtools.io.get_sim_path(n_sim)\n", " maxsnap = csiborgtools.io.get_maximum_snapshot(simpath)\n", " box = csiborgtools.units.BoxUnits(maxsnap, simpath)\n", " print(maxsnap, box._aexp)" ] }, { "cell_type": "code", "execution_count": null, "id": "192853c4", "metadata": {}, "outputs": [], "source": [] }, { "cell_type": "code", "execution_count": null, "id": "0c145fbc", "metadata": {}, "outputs": [], "source": [] }, { "cell_type": "code", "execution_count": null, "id": "f21964e5", "metadata": {}, "outputs": [], "source": [] }, { "cell_type": "code", "execution_count": null, "id": "84ea4faf", "metadata": { "ExecuteTime": { "end_time": "2022-11-14T16:00:41.737065Z", "start_time": "2022-11-14T16:00:40.928532Z" } }, "outputs": [], "source": [ "simpath = csiborgtools.io.get_sim_path(7660)" ] }, { "cell_type": "code", "execution_count": null, "id": "13268041", "metadata": { "ExecuteTime": { "end_time": "2022-11-14T16:00:41.805562Z", "start_time": "2022-11-14T16:00:41.739425Z" } }, "outputs": [], "source": [ "simpath" ] }, { "cell_type": "code", "execution_count": null, "id": "c2d53934", "metadata": { "ExecuteTime": { "end_time": "2022-11-14T16:01:06.640894Z", "start_time": "2022-11-14T16:01:06.230907Z" } }, "outputs": [], "source": [ "box = csiborgtools.units.BoxUnits(999, simpath)" ] }, { "cell_type": "code", "execution_count": null, "id": "345a01d3", "metadata": { "ExecuteTime": { "end_time": "2022-11-14T16:01:51.638849Z", "start_time": "2022-11-14T16:01:51.185358Z" } }, "outputs": [], "source": [ "box._aexp\n" ] }, { "cell_type": "code", "execution_count": null, "id": "61ec5596", "metadata": {}, "outputs": [], "source": [] }, { "cell_type": "code", "execution_count": null, "id": "14d2b61d", "metadata": {}, "outputs": [], "source": [] }, { "cell_type": "code", "execution_count": null, "id": "a7e78419", "metadata": { "ExecuteTime": { "end_time": "2022-11-10T06:40:31.103185Z", "start_time": "2022-11-10T06:40:30.996113Z" } }, "outputs": [], "source": [ "planck = utils.load_planck2015(200)\n", "mcxc = utils.load_mcxc(200)\n", "\n", "indxs = csiborgtools.io.match_planck_to_mcxc(planck, mcxc)" ] }, { "cell_type": "code", "execution_count": null, "id": "185c6c03", "metadata": { "ExecuteTime": { "end_time": "2022-11-10T07:36:22.652521Z", "start_time": "2022-11-10T07:36:14.980728Z" } }, "outputs": [], "source": [ "groups = utils.load_2mpp_groups()\n", "\n", "Nsim = 9844\n", "Nsnap = 1016\n", "\n", "data = utils.load_processed(Nsim, Nsnap)" ] }, { "cell_type": "code", "execution_count": null, "id": "272befd5", "metadata": {}, "outputs": [], "source": [] }, { "cell_type": "code", "execution_count": null, "id": "b15427bb", "metadata": { "ExecuteTime": { "end_time": "2022-11-10T07:38:28.598904Z", "start_time": "2022-11-10T07:38:28.427656Z" } }, "outputs": [], "source": [ "plt.figure()\n", "\n", "m = data[\"m500\"] > 1e13\n", "plt.scatter(data[\"ra\"][m], data[\"dec\"][m], label=\"CSiBORG\", s=3)\n", "plt.scatter(groups[\"RA\"], groups[\"DEC\"], label=\"2M++ galaxy groups\", s=3, marker=\"x\")\n", "\n", "\n", "\n", "plt.show()" ] }, { "cell_type": "code", "execution_count": null, "id": "2489d85e", "metadata": {}, "outputs": [], "source": [] }, { "cell_type": "code", "execution_count": null, "id": "2442bec3", "metadata": { "ExecuteTime": { "end_time": "2022-11-09T21:43:04.928922Z", "start_time": "2022-11-09T21:43:04.521323Z" } }, "outputs": [], "source": [] }, { "cell_type": "code", "execution_count": null, "id": "7af8a421", "metadata": { "ExecuteTime": { "end_time": "2022-11-09T21:46:29.948541Z", "start_time": "2022-11-09T21:46:28.979688Z" } }, "outputs": [], "source": [ "RAcoma = (12 + 59/60 + 48.7 / 60**2) * 15\n", "DECcoma = 27 + 58 / 60 + 50 / 60**2\n", "\n", "\n", "RAvirgo = (12 + 27 / 60) * 15\n", "DECvirgo = 12 + 43/60\n", "\n", "\n", "\n", "plt.figure()\n", "\n", "\n", "plt.scatter(mcxc[\"RAdeg\"], mcxc[\"DEdeg\"], label=\"MCXC\")\n", "plt.scatter(planck[\"RA\"], planck[\"DEC\"], label=\"Plank\",s=8, c=\"red\")\n", "\n", "plt.scatter(RAcoma, DECcoma, label=\"Coma\", s=30, marker=\"x\")\n", "plt.scatter(RAvirgo, DECvirgo, label=\"Virgo\", s=30, marker=\"x\")\n", "\n", "plt.legend(framealpha=0.5)\n", "plt.xlabel(\"RA\")\n", "plt.ylabel(\"DEC\")\n", "plt.title(\"Clusters below 200 Mpc\")\n", "plt.savefig(\"../plots/clusters_radec.png\", dpi=450)\n", "\n", "plt.show()" ] }, { "cell_type": "code", "execution_count": null, "id": "01f5c4b3", "metadata": {}, "outputs": [], "source": [] }, { "cell_type": "code", "execution_count": null, "id": "1b0a0f9e", "metadata": {}, "outputs": [], "source": [] }, { "cell_type": "code", "execution_count": null, "id": "d6ef387a", "metadata": { "ExecuteTime": { "end_time": "2022-11-09T21:40:24.392358Z", "start_time": "2022-11-09T21:40:23.480949Z" }, "scrolled": false }, "outputs": [], "source": [ "plt.figure()\n", "\n", "plt.scatter(mcxc[\"COMDIST\"], mcxc[\"M500\"], label=\"MCXC\")\n", "# yerr = np.vstack([planck[\"MSZ\"] - planck[\"MSZ_ERR_LOW\"],\n", "# planck[\"MSZ_ERR_UP\"] - planck[\"MSZ\"]])\n", "yerr = np.vstack([planck[\"MSZ_ERR_LOW\"], planck[\"MSZ_ERR_UP\"]])\n", "plt.errorbar(planck[\"COMDIST\"], planck[\"MSZ\"], yerr, label=\"Plank\", fmt=\" \", capsize=3, color=\"red\")\n", "\n", "plt.yscale(\"log\")\n", "plt.legend()\n", "plt.title(\"Clusters below 200 Mpc\")\n", "plt.xlabel(r\"$D_{\\rm c} / \\mathrm{Mpc}$\")\n", "plt.ylabel(r\"$M_{\\rm 500c} / M_\\odot$\")\n", "# plt.savefig(\"../plots/clusters_mass_dist.png\", dpi=450)\n", "\n", "plt.show()" ] }, { "cell_type": "code", "execution_count": null, "id": "d7e113a8", "metadata": { "ExecuteTime": { "end_time": "2022-11-09T15:59:03.390824Z", "start_time": "2022-11-09T15:59:02.962263Z" } }, "outputs": [], "source": [ "d[\"RAdeg\"]" ] }, { "cell_type": "code", "execution_count": null, "id": "e7ae386e", "metadata": {}, "outputs": [], "source": [] }, { "cell_type": "code", "execution_count": null, "id": "9fa1dc0e", "metadata": {}, "outputs": [], "source": [] }, { "cell_type": "code", "execution_count": null, "id": "22cb8bfd", "metadata": { "ExecuteTime": { "end_time": "2022-11-09T15:56:10.087582Z", "start_time": "2022-11-09T15:56:10.062895Z" } }, "outputs": [], "source": [ "d.dtype.names" ] }, { "cell_type": "code", "execution_count": null, "id": "84639e39", "metadata": { "ExecuteTime": { "end_time": "2022-11-09T15:56:47.929058Z", "start_time": "2022-11-09T15:56:47.737531Z" } }, "outputs": [], "source": [ "d[\"Cat\"]" ] }, { "cell_type": "code", "execution_count": null, "id": "d4a98c60", "metadata": { "ExecuteTime": { "end_time": "2022-11-09T15:55:12.287185Z", "start_time": "2022-11-09T15:55:12.124019Z" } }, "outputs": [], "source": [ "type(d[\"MCXC\"])" ] }, { "cell_type": "code", "execution_count": null, "id": "b32906be", "metadata": { "ExecuteTime": { "end_time": "2022-11-09T15:55:49.218385Z", "start_time": "2022-11-09T15:55:49.099991Z" } }, "outputs": [], "source": [ "np.asanyarray([\"aasdasdaasdasdasdad\", \"bsdfadadfasddsgasdg\"]).dtype" ] }, { "cell_type": "code", "execution_count": null, "id": "be1920a5", "metadata": {}, "outputs": [], "source": [] }, { "cell_type": "code", "execution_count": null, "id": "2c173e6a", "metadata": { "ExecuteTime": { "end_time": "2022-11-09T15:54:17.529059Z", "start_time": "2022-11-09T15:54:17.220209Z" } }, "outputs": [], "source": [ "d[\"MCXC\"]" ] }, { "cell_type": "code", "execution_count": null, "id": "40c7ab70", "metadata": {}, "outputs": [], "source": [] }, { "cell_type": "code", "execution_count": null, "id": "5284fc28", "metadata": { "ExecuteTime": { "end_time": "2022-11-09T15:47:57.986432Z", "start_time": "2022-11-09T15:47:57.575714Z" } }, "outputs": [], "source": [ "plt.figure()\n", "# plt.scatter(d[\"RAdeg\"], d[\"DEdeg\"], s=1)\n", "plt.scatter(d[\"z\"], d[\"M500\"], s=1)\n", "\n", "plt.yscale(\"log\")\n", "plt.show()" ] }, { "cell_type": "code", "execution_count": null, "id": "7cfb2a1d", "metadata": {}, "outputs": [], "source": [] }, { "cell_type": "code", "execution_count": null, "id": "b01c6134", "metadata": {}, "outputs": [], "source": [] }, { "cell_type": "code", "execution_count": null, "id": "267eb013", "metadata": { "ExecuteTime": { "end_time": "2022-11-06T10:20:27.266576Z", "start_time": "2022-11-06T10:20:24.523404Z" } }, "outputs": [], "source": [ "Nsim = 9844\n", "Nsnap = 1016\n", "\n", "data = utils.load_processed(Nsim, Nsnap)" ] }, { "cell_type": "code", "execution_count": null, "id": "f8c6d928", "metadata": { "ExecuteTime": { "end_time": "2022-11-06T10:24:20.697506Z", "start_time": "2022-11-06T10:24:19.631208Z" } }, "outputs": [], "source": [ "bins = np.arange(11.8, 15.4, 0.2)\n", "\n", "\n", "plt.figure()\n", "x, mu, std = csiborgtools.match.number_density(data, \"m200\", bins, 200, True)\n", "plt.errorbar(x, mu, std, capsize=4, label=r\"$M_{200c}$\")\n", "\n", "x, mu, std = csiborgtools.match.number_density(data, \"m500\", bins, 200, True)\n", "plt.errorbar(x, mu, std, capsize=4, label=r\"$M_{500c}$\")\n", "\n", "x, mu, std = csiborgtools.match.number_density(data, \"totpartmass\", bins, 200, True)\n", "plt.errorbar(x, mu, std, capsize=4, label=r\"$M_{\\rm tot}$\")\n", "\n", "x, mu, std = csiborgtools.match.number_density(data, \"mass_mmain\", bins, 200, True)\n", "plt.errorbar(x, mu, std, capsize=4, label=r\"$M_{\\rm mmain}$\")\n", "\n", "plt.legend()\n", "\n", "plt.yscale(\"log\")\n", "plt.xscale(\"log\")\n", "\n", "plt.ylabel(r\"$\\phi / (\\mathrm{Mpc}^{-3})~\\mathrm{dex}$\")\n", "plt.xlabel(r\"$M_{\\rm x}$\")\n", "plt.tight_layout()\n", "plt.savefig(\"../plots/HMF.png\", dpi=450)\n", "plt.show()" ] }, { "cell_type": "code", "execution_count": null, "id": "985d46c9", "metadata": { "ExecuteTime": { "end_time": "2022-11-06T10:20:46.078113Z", "start_time": "2022-11-06T10:20:44.524929Z" } }, "outputs": [], "source": [ "nfw = csiborgtools.fits.NFWProfile()\n", "m200_nfw = nfw.enclosed_mass(data[\"r200\"], data[\"Rs\"], data[\"rho0\"])\n", "\n", "\n", "\n", "plt.figure()\n", "\n", "plt.scatter(data[\"m200\"], m200_nfw, s=1)\n", "t = np.linspace(1e11, 1e15)\n", "plt.plot(t, t, c=\"red\", ls=\"--\", lw=1.5)\n", "plt.xscale(\"log\")\n", "plt.yscale(\"log\")\n", "\n", "plt.xlabel(r\"$M_{200c}$\")\n", "plt.ylabel(r\"$M_{\\mathrm{NFW}, 200c}$\")\n", "plt.tight_layout()\n", "plt.savefig(\"../plots/enclosed_vs_nfw.png\", dpi=450)\n", "plt.show()" ] }, { "cell_type": "code", "execution_count": null, "id": "8923ca86", "metadata": {}, "outputs": [], "source": [] }, { "cell_type": "code", "execution_count": null, "id": "6eb8ba93", "metadata": { "ExecuteTime": { "end_time": "2022-11-06T10:22:19.498275Z", "start_time": "2022-11-06T10:22:17.953025Z" }, "scrolled": false }, "outputs": [], "source": [ "logm200 = np.log10(data[\"m200\"])\n", "conc = data[\"conc\"]\n", "\n", "N = 10\n", "bins = np.linspace(logm200.min(), logm200.max(), N)\n", "x = [0.5*(bins[i] + bins[i + 1]) for i in range(N-1)]\n", "y = np.full((N - 1, 3), np.nan)\n", "for i in range(N - 1):\n", " mask = (logm200 >= bins[i]) & (logm200 < bins[i + 1]) & np.isfinite(conc)\n", " y[i, :] = np.percentile(conc[mask], [14, 50, 84])\n", "\n", "\n", " \n", " \n", "fig, axs = plt.subplots(nrows=2, sharex=True, figsize=(6.4, 6.4 * 1))\n", "fig.subplots_adjust(hspace=0)\n", "axs[0].plot(x, y[:, 1], c=\"red\", marker=\"o\")\n", "axs[0].fill_between(x, y[:, 0], y[:, 2], color=\"red\", alpha=0.25)\n", "axs[1].hist(logm200, bins=\"auto\", log=True)\n", "\n", "for b in bins:\n", " for i in range(2):\n", " axs[i].axvline(b, c=\"orange\", lw=0.5)\n", "\n", "axs[0].set_ylim(2, 10)\n", "axs[1].set_xlabel(r\"$M_{200c}$\")\n", "axs[0].set_ylabel(r\"$c_{200c}$\")\n", "axs[1].set_ylabel(r\"Counts\")\n", "\n", "plt.tight_layout(h_pad=0)\n", "plt.savefig(\"../plots/mass_concentration.png\", dpi=450)\n", "plt.show()" ] }, { "cell_type": "code", "execution_count": null, "id": "be26cbcc", "metadata": {}, "outputs": [], "source": [] } ], "metadata": { "kernelspec": { "display_name": "venv_galomatch", "language": "python", "name": "venv_galomatch" }, "language_info": { "codemirror_mode": { "name": "ipython", "version": 3 }, "file_extension": ".py", "mimetype": "text/x-python", "name": "python", "nbconvert_exporter": "python", "pygments_lexer": "ipython3", "version": "3.8.0" }, "vscode": { "interpreter": { "hash": "f29d02a8350410abc2a9fb79641689d10bf7ab64afc03ec87ca3cf6ed2daa499" } } }, "nbformat": 4, "nbformat_minor": 5 }