# Copyright (C) 2022 Richard Stiskalek # This program is free software; you can redistribute it and/or modify it # under the terms of the GNU General Public License as published by the # Free Software Foundation; either version 3 of the License, or (at your # option) any later version. # # This program is distributed in the hope that it will be useful, but # WITHOUT ANY WARRANTY; without even the implied warranty of # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General # Public License for more details. # # You should have received a copy of the GNU General Public License along # with this program; if not, write to the Free Software Foundation, Inc., # 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA. """ MPI script to calculate the matter cross power spectrum between CSiBORG IC realisations. Units are Mpc/h. """ from argparse import ArgumentParser from datetime import datetime from gc import collect from itertools import combinations from os import remove from os.path import join import joblib import numpy import Pk_library as PKL from mpi4py import MPI try: import csiborgtools except ModuleNotFoundError: import sys sys.path.append("../") import csiborgtools dumpdir = "/mnt/extraspace/rstiskalek/csiborg/" parser = ArgumentParser() parser.add_argument("--grid", type=int) parser.add_argument("--halfwidth", type=float, default=0.5) args = parser.parse_args() # Get MPI things comm = MPI.COMM_WORLD rank = comm.Get_rank() nproc = comm.Get_size() MAS = "CIC" # mass asignment scheme paths = csiborgtools.read.Paths(**csiborgtools.paths_glamdring) box = csiborgtools.read.CSiBORGBox(paths) reader = csiborgtools.read.ParticleReader(paths) ics = paths.get_ics() nsims = len(ics) # File paths ftemp = join(dumpdir, "temp_crosspk", "out_{}_{}" + "_{}".format(args.halfwidth)) fout = join(dumpdir, "crosspk", "out_{}_{}" + "_{}.p".format(args.halfwidth)) jobs = csiborgtools.utils.split_jobs(nsims, nproc)[rank] for n in jobs: print(f"Rank {rank} at {datetime.now()}: saving {n}th delta.", flush=True) nsim = ics[n] particles = reader.read_particle(max(paths.get_snapshots(nsim)), nsim, ["x", "y", "z", "M"], verbose=False) # Halfwidth -- particle selection if args.halfwidth < 0.5: particles = csiborgtools.read.halfwidth_select( args.halfwidth, particles) length = box.box2mpc(2 * args.halfwidth) * box.h # Mpc/h else: length = box.box2mpc(1) * box.h # Mpc/h # Calculate the overdensity field field = csiborgtools.field.DensityField(particles, length, box, MAS) delta = field.overdensity_field(args.grid, verbose=False) aexp = box._aexp # Try to clean up memory del field, particles, box, reader collect() # Dump the results with open(ftemp.format(nsim, "delta") + ".npy", "wb") as f: numpy.save(f, delta) joblib.dump([aexp, length], ftemp.format(nsim, "lengths") + ".p") # Try to clean up memory del delta collect() comm.Barrier() # Get off-diagonal elements and append the diagoal combs = [c for c in combinations(range(nsims), 2)] for i in range(nsims): combs.append((i, i)) prev_delta = [-1, None, None, None] # i, delta, aexp, length jobs = csiborgtools.utils.split_jobs(len(combs), nproc)[rank] for n in jobs: i, j = combs[n] print("Rank {}@{}: combination {}.".format(rank, datetime.now(), (i, j))) # If i same as last time then don't have to load it if prev_delta[0] == i: delta_i = prev_delta[1] aexp_i = prev_delta[2] length_i = prev_delta[3] else: with open(ftemp.format(ics[i], "delta") + ".npy", "rb") as f: delta_i = numpy.load(f) aexp_i, length_i = joblib.load(ftemp.format(ics[i], "lengths") + ".p") # Store in prev_delta prev_delta[0] = i prev_delta[1] = delta_i prev_delta[2] = aexp_i prev_delta[3] = length_i # Get jth delta with open(ftemp.format(ics[j], "delta") + ".npy", "rb") as f: delta_j = numpy.load(f) aexp_j, length_j = joblib.load(ftemp.format(ics[j], "lengths") + ".p") # Verify the difference between the scale factors! Say more than 1% daexp = abs((aexp_i - aexp_j) / aexp_i) if daexp > 0.01: raise ValueError( "Boxes {} and {} final snapshot scale factors disagree by " "`{}` percent!".format(ics[i], ics[j], daexp * 100)) # Check how well the boxsizes agree dlength = abs((length_i - length_j) / length_i) if dlength > 0.001: raise ValueError("Boxes {} and {} box sizes disagree by `{}` percent!" .format(ics[i], ics[j], dlength * 100)) # Calculate the cross power spectrum Pk = PKL.XPk([delta_i, delta_j], length_i, axis=1, MAS=[MAS, MAS], threads=1) joblib.dump(Pk, fout.format(ics[i], ics[j])) del delta_i, delta_j, Pk collect() # Clean up the temp files comm.Barrier() if rank == 0: print("Cleaning up the temporary files...") for ic in ics: remove(ftemp.format(ic, "delta") + ".npy") remove(ftemp.format(ic, "lengths") + ".p") print("All finished!")