# Copyright (C) 2022 Richard Stiskalek # This program is free software; you can redistribute it and/or modify it # under the terms of the GNU General Public License as published by the # Free Software Foundation; either version 3 of the License, or (at your # option) any later version. # # This program is distributed in the hope that it will be useful, but # WITHOUT ANY WARRANTY; without even the implied warranty of # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General # Public License for more details. # # You should have received a copy of the GNU General Public License along # with this program; if not, write to the Free Software Foundation, Inc., # 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA. r""" Script to sort the initial snapshot particles according to their final snapshot ordering, which is sorted by the halo IDs. Ensures the following units: - Positions in box units. - Masses in :math:`M_\odot / h`. """ from argparse import ArgumentParser from datetime import datetime from gc import collect import h5py import numpy from mpi4py import MPI from taskmaster import work_delegation from utils import get_nsims try: import csiborgtools except ModuleNotFoundError: import sys sys.path.append("../") import csiborgtools def _main(nsim, simname, verbose): """ Sort the initial snapshot particles according to their final snapshot ordering and dump them into a HDF5 file. """ paths = csiborgtools.read.Paths(**csiborgtools.paths_glamdring) if simname == "csiborg": partreader = csiborgtools.read.CSiBORGReader(paths) else: partreader = csiborgtools.read.QuijoteReader(paths) if verbose: print(f"{datetime.now()}: reading and processing simulation `{nsim}`.", flush=True) # We first load the particle IDs in the final snapshot. pidf = csiborgtools.read.read_h5(paths.particles(nsim, simname)) pidf = pidf["particle_ids"] # Then we load the particles in the initil snapshot and make sure that # their particle IDs are sorted as in the final snapshot. Again, because of # precision this must be read as structured. if simname == "csiborg": pars_extract = ["x", "y", "z", "M", "ID"] # CSiBORG's initial snapshot ID nsnap = 1 else: pars_extract = None # Use this to point the reader to the ICs snapshot nsnap = -1 part0, pid0 = partreader.read_particle( nsnap, nsim, pars_extract, return_structured=False, verbose=verbose) # In CSiBORG we need to convert particle masses from box units. if simname == "csiborg": box = csiborgtools.read.CSiBORGBox( max(paths.get_snapshots(nsim, simname)), nsim, paths) part0[:, 3] = box.box2solarmass(part0[:, 3]) # Quijote's initial snapshot information also contains velocities but we # don't need those. if simname == "quijote": part0 = part0[:, [0, 1, 2, 6]] # In Quijote some particles are position precisely at the edge of the # box. Move them to be just inside. pos = part0[:, :3] mask = pos >= 1 if numpy.any(mask): spacing = numpy.spacing(pos[mask]) assert numpy.max(spacing) <= 1e-5 pos[mask] -= spacing # First enforce them to already be sorted and then apply reverse # sorting from the final snapshot. part0 = part0[numpy.argsort(pid0)] del pid0 collect() part0 = part0[numpy.argsort(numpy.argsort(pidf))] fout = paths.initmatch(nsim, simname, "particles") if verbose: print(f"{datetime.now()}: dumping particles for `{nsim}` to `{fout}`", flush=True) with h5py.File(fout, "w") as f: f.create_dataset("particles", data=part0) if __name__ == "__main__": # Argument parser parser = ArgumentParser() parser.add_argument("--simname", type=str, default="csiborg", choices=["csiborg", "quijote"], help="Simulation name") parser.add_argument("--nsims", type=int, nargs="+", default=None, help="IC realisations. If `-1` processes all.") args = parser.parse_args() paths = csiborgtools.read.Paths(**csiborgtools.paths_glamdring) nsims = get_nsims(args, paths) def main(nsim): _main(nsim, args.simname, MPI.COMM_WORLD.Get_size() == 1) work_delegation(main, nsims, MPI.COMM_WORLD)