# Copyright (C) 2022 Richard Stiskalek # This program is free software; you can redistribute it and/or modify it # under the terms of the GNU General Public License as published by the # Free Software Foundation; either version 3 of the License, or (at your # option) any later version. # # This program is distributed in the hope that it will be useful, but # WITHOUT ANY WARRANTY; without even the implied warranty of # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General # Public License for more details. # # You should have received a copy of the GNU General Public License along # with this program; if not, write to the Free Software Foundation, Inc., # 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA. """ Script to split particles into smaller files according to their clump membership for faster manipulation. Currently does this for the maximum snapshot of each simulation. Running this requires a lot of memory. """ from mpi4py import MPI from datetime import datetime try: import csiborgtools except ModuleNotFoundError: import sys sys.path.append("../") import csiborgtools import utils # Get MPI things comm = MPI.COMM_WORLD rank = comm.Get_rank() nproc = comm.Get_size() paths = csiborgtools.read.CSiBORGPaths() sims = paths.ic_ids(False) partcols = ["x", "y", "z", "vx", "vy", "vz", "M", "level"] jobs = csiborgtools.fits.split_jobs(len(sims), nproc)[rank] for icount, sim_index in enumerate(jobs): print("{}: rank {} working {} / {} jobs." .format(datetime.now(), rank, icount + 1, len(jobs)), flush=True) nsim = sims[sim_index] nsnap = max(paths.get_snapshots(nsim)) partreader = csiborgtools.read.ParticleReader(paths) # Load the clumps, particles' clump IDs and particles. clumps = partreader.read_clumps(nsnap, nsim) particle_clumps = partreader.read_clumpid(nsnap, nsim, verbose=False) particles = partreader.read_particle(nsnap, nsim, partcols, verbose=False) # Drop all particles whose clump index is 0 (not assigned to any halo) particle_clumps, particles = partreader.drop_zero_indx( particle_clumps, particles) # Dump it! csiborgtools.fits.dump_split_particles(particles, particle_clumps, clumps, utils.Nsplits, nsnap, nsim, paths, verbose=False) print("All finished!", flush=True)