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2 commits

Author SHA1 Message Date
Richard Stiskalek
aaa14fc880
Add density field plot and start preparing CSiBORG2 (#94)
* Add RAMSES2HDF5 conversion

* Upload changes

* Clean up

* More clean up

* updates

* Little change

* pep9

* Add basic SPH calculation for a snapshot

* Add submit script

* Remove echo

* Little changes

* Send off changes

* Little formatting

* Little updates

* Add nthreads argument

* Upload chagnes

* Add nthreads arguemnts

* Some local changes..

* Update scripts

* Add submission script

* Update script

* Update params

* Rename CSiBORGBox to CSiBORG1box

* Rename CSiBORG1 reader

* Move files

* Rename folder again

* Add basic plotting here

* Add new skeletons

* Move def

* Update nbs

* Edit directories

* Rename files

* Add units to converted snapshots

* Fix empty dataset bug

* Delete file

* Edits to submission scripts

* Edit paths

* Update .gitignore

* Fix attrs

* Update weighting

* Fix RA/dec bug

* Add FORNAX cluster

* Little edit

* Remove boxes since will no longer need

* Move func back

* Edit to include sort by membership

* Edit paths

* Purge basic things

* Start removing

* Bring file back

* Scratch

* Update the rest

* Improve the entire file

* Remove old things

* Remove old

* Delete old things

* Fully updates

* Rename file

* Edit submit script

* Little things

* Add print statement

* Add here cols_to_structured

* Edit halo cat

* Remove old import

* Add comment

* Update paths manager

* Move file

* Remove file

* Add chains
2023-12-13 16:08:25 +00:00
Richard Stiskalek
e972f8e3f2
Add pynbody and other support (#92)
* Simplify box units

* Move old scripts

* Add printing

* Update readers

* Disable boundscheck

* Add new ordering

* Clean up imports

* Enforce dtype and add mass to quijote

* Simplify print statements

* Fix little typos

* Fix key bug

* Bug fixing

* Delete boring comments

* Improve ultimate clumps for PHEW

* Delete boring comments

* Add basic reading

* Remove 0th index HID

* Add flipping of X and Z

* Updates to halo catalogues

* Add ordered caching

* Fix flipping

* Add new flags

* Fix PHEW empty clumps

* Stop over-wrriting

* Little improvements to angular neighbours

* Add catalogue masking

* Change if-else statements

* Cache only filtered data

* Add PHEW cats

* Add comments

* Sort imports

* Get Quijote workign

* Docs

* Add HMF calculation

* Move to old

* Fix angular

* Add great circle distance

* Update imports

* Update impotrts

* Update docs

* Remove unused import

* Fix a quick bug

* Update compatibility

* Rename files

* Renaming

* Improve compatiblity

* Rename snapsht

* Fix snapshot bug

* Update interface

* Finish updating interface

* Update all paths

* Add old scripts

* Add basic halo

* Update imports

* Improve snapshot processing

* Update ordering

* Fix how CM positions accessed

* Add merger paths

* Add imports

* Add merger reading

* Add making a merger tree

* Add a basic merger tree reader

* Add imports

* Add main branch walking + comments + debuggin

* Get tree running

* Add working merger tree walking along main branch

* Add units conversion for merger data

* Add hid_to_array_index

* Update merger tree

* Add mergertree mass to PHEWcat

* Edit comments

* Add this to track changes...

* Fix a little bug

* Add mergertree mass

* Add cache clearing

* Improve summing substructure code

* Littbe bug

* Little updates to the merger tree reader

* Update .giignore

* Add box selection

* Add optional deletingf of a group

* add to keep track of changes

* Update changes

* Remove

* Add manual tracker

* Fix bug

* Add m200c_to_r200c

* Add manual halo tracking

* Remove skipped snapshots

* update cosmo params to match csiborg

* remove old comments

* Add SDSSxALFALFA

* Fix bugs

* Rename

* Edit paths

* Updates

* Add comments

* Add comment

* Add hour conversion

* Add imports

* Add new observation class

* Add selection

* Add imports

* Fix small bug

* Add field copying for safety

* Add matching to survey without masking

* Add P(k) calculation

* Add nb

* Edit comment

* Move files

* Remove merger import

* Edit setup.yp

* Fix typo

* Edit import warnigns

* update nb

* Update README

* Update README

* Update README

* Add skeleton

* Add skeleton
2023-12-07 14:23:32 +00:00
Renamed from scripts/mv_fofmembership.py (Browse further)