Richard Stiskalek
3d1e1c0ae3
Add more about evidence and selection to flow ( #142 )
...
* Add Laplace evidence
* Numerically stable laplace evidence
* Minor edits to Laplace
* Remove rmax
* Rm old things
* Rm comments
* Add script
* Add super toy selection
* Add super toy selection
* Update script
2024-08-27 00:36:00 +02:00
Richard Stiskalek
d13246a394
Add CF4 and more improvements ( #141 )
...
* Update params counting
* Update imports
* Add CF4 group
* Update submit
* Update submit
* Many updates
* Many more updates
* Add CF4 TFR
* Add CF4 TF
* Fix RA bug in CF4 TF
* Add CF4 quality cut
* Start sampling alpha
* Update scripts
* Some comments
* Update script
* Add option to have magnitude selection.
* Add calibration dipoles
2024-08-25 17:03:51 +02:00
Richard Stiskalek
d578c71b83
LSS projected basics ( #140 )
...
* Move files
* Move files
* Add galactic to RA/dec
* Update sky maps
* Add projected fields
* Remove old import
* Quick update
* Add IO
* Add imports
* Update imports
* Add basic file
2024-08-14 13:02:38 +02:00
Richard Stiskalek
3b46f17ead
Combine PV samples ( #139 )
...
* Update imports
* Update submission script
* Update script
* Add simulataenous sampling of many catalogues
* Update nb
2024-07-30 17:02:48 +01:00
Richard Stiskalek
b22da9893f
Pantheon+ covariance ( #138 )
...
* Add improt
* Add PP reading attempt
* Remoe odd step requirement
* Update script
* Add CF4
* Add CF4
* Fix path bug
* Update scripts
* Update nb
* Update script
2024-07-25 14:53:18 +01:00
Richard Stiskalek
8d49aa071b
More LOS ( #137 )
...
* Switch to CB2
* Update for extrapolation
* Add 'nan' extrapolation
* Update nb
* Update submits
* Add Rmax to the models
* Update nb
* Add print statement
* Update script settings
* Update flow model to new method
* Update printing
* Update path
* Update so that it works
* Update nb
* Update submit
* Add Rmin for hollow bulk flows
* Update script
* Update script
* Update scripts back
* Update scripts back
* Fix normalization bug
* Update script
* pep8
2024-07-25 11:48:37 +01:00
rstiskalek
73ffffb826
Move files
2024-07-13 21:57:06 +01:00
Richard Stiskalek
68fbd594cd
Add monopole to VF ( #136 )
...
* Add monopole sampling
* Add monopole
* Update script
* Bring back zmax
* Add monopole
* Add condition in case division by 0
* Add monopole to field
* Update nb
* Update script
* Update scripts
* Simplify docs
2024-07-13 21:52:42 +01:00
Richard Stiskalek
43ebf660ee
Update prior in VF ( #135 )
...
* Update priors
* Update submit
* Update README
* Relax width of calibration priors
* Relax width of calibration priors
* Update smooth scales
* Update settings
* Update README
* Update submit
* Add names
* Update nb
* Fix bug
* Update script
* Move files
* Small bug fix
* Add script
* Add script
* Add script
* Add more power
* Update script
* Quick fix
* Rm blank line
* Update nb
* Update nb
* Update nb
2024-07-12 15:46:45 +01:00
rstiskalek
78ff32be93
Update script
2024-07-03 09:53:00 +01:00
rstiskalek
2e6fa68154
Update params
2024-07-03 09:49:05 +01:00
rstiskalek
4b1bfb4d3c
Update script
2024-07-03 09:48:18 +01:00
rstiskalek
12c25a0742
Update to linear interpolation
2024-07-03 09:48:13 +01:00
rstiskalek
dcea9a305e
Add sript
2024-07-01 14:19:06 +01:00
Richard Stiskalek
c6f49790bf
Plots of VF ( #134 )
...
* Add VF plots
* Update nb
* Add CMB velocity note
* rm nb
* Add option to return alllikelihood
* Add simulation weights
* Update nb
* Add bulkflow
* Update nb
* Add values of beta
* Update imports
* Update imports
* Add paths to Carrick and Lilow fiels
* Add Carrick and Lilow fields
* Add support for more fields
* Update bulkflow comp
* Update nb
* Update script
2024-07-01 11:48:50 +01:00
rstiskalek
7dad6885e8
Update nb
2024-06-28 22:58:56 +01:00
rstiskalek
d4a0a74207
Clear up TODO
2024-06-28 13:33:42 +01:00
rstiskalek
a94a6f32b6
Update script
2024-06-28 13:32:55 +01:00
rstiskalek
4b93f36017
Update script
2024-06-28 13:24:20 +01:00
rstiskalek
1bfe658f2d
Update submit script
2024-06-28 13:23:32 +01:00
rstiskalek
006b5c3b40
Update script
2024-06-28 13:23:26 +01:00
rstiskalek
cc8075b159
Remove blanks
2024-06-28 12:46:47 +01:00
rstiskalek
6c27e36716
Update script
2024-06-28 12:44:16 +01:00
Richard Stiskalek
84a1609d77
Add Lilow2024 velocity fields ( #133 )
...
* Add Lilow data
* Fix Lilow NaNs
* Update nb
* Update nb
2024-06-28 11:55:42 +01:00
Richard Stiskalek
301ff61e89
Add CF4 mean & std ( #132 )
...
* Add observer velocity
* Add radec to supergalactic
* Update script
* Add CF4 params
* Add paths to CF4
* Add CF4 but not sth wrong
* Update nb
* Remove errors
* Update nb
* Update scripts
2024-06-27 15:02:33 +01:00
Richard Stiskalek
ce55a2b47e
Add marginalization over boxes ( #131 )
...
* Parallelize over simulations
* Update docs
* Update dependency
* Update imports
* Add adtitional dependencies
* Update .gitignore
* Update ERADME
* Simplify numpyro GOF
* Speed up GOF
* Deepcopy samples
* Update scripts
* Add GPU acceleration
* Select boxes
* Update script
* Optionally sample beta
* Fix old code
* Simplify code
* Start saving log posterior
* Start popping log_likeliood
* Add imports
* Add converting samples
* Fix sctipt name
* Add evidence with harmonic
* Remove comment
* Update imports
* Update imports so that pylians not required
* Stop requiring Pylians to be installed
* Update submission scripts for loops
* Update nb
* Update nb
* Add Manticore boxes
* Add verbosity flag
* Add bulk flow
* Update script
* Update nb
* Update normalization
* Update submit
* Update nb
2024-06-26 10:43:26 +01:00
Richard Stiskalek
ffaf92cd4b
Add Manticore ( #130 )
...
* Add CB2X paths
* Update imports
* Add CB2 params
* Add CB2x fields
* Add CB2X field
* Add parallelized
* Add **kwargs
* Update nb
* Minor updates
2024-06-21 19:21:06 +01:00
Richard Stiskalek
779f2e76ac
Calculate upglade redshifts ( #128 )
...
* Update redshift reading
* Add helio to CMB redshift
* Update imports
* Update nb
* Run for Quijote
* Add script
* Update
* Update .gitignore
* Update imports
* Add Peery estimator
* Add bulk flow scripts
* Update typs
* Add comment
* Add blank space
* Update submission script
* Update description
* Add barriers
* Update nb
* Update nb
* Rename script
* Move to old
* Update imports
* Add nb
* Update script
* Fix catalogue key
* Update script
* Update submit
* Update comment
* Update .gitignore
* Update nb
* Update for stationary obsrevers
* Update submission
* Add nb
* Add better verbose control
* Update nb
* Update submit
* Update nb
* Add SN errors
* Add draft of the script
* Update verbosity flags
* Add submission script
* Debug script
* Quickfix
* Remove comment
* Update nb
* Update submission
* Update nb
* Processed UPGLADE
2024-06-20 14:33:00 +01:00
Richard Stiskalek
c4557cf35b
Matching of observations ( #127 )
...
* Rename file
* Add indents
* Update imports
* Add counting
* Docs
* Add nb
* Rename nb
* Update nb
* Add PV processing
* Update nb
* Add Pantheon+groups
* Update submission scripts
* Add Pantheon+zSN
* Update nb
* Edit param
* Matchin SFI
* Update nb
* Fix path bug
* Add list of clusters
* Update imports
* Update imports
* Add cartesian & mass of clusters
* Add observation to halo matching
* Add nb
* Add inverse CDF
* Add import
* Update nb
* Add comments
2024-04-23 12:02:09 +01:00
Richard Stiskalek
3876985f26
Extend enclosed density to all CB2 ( #126 )
...
* Add borg2 flag
* add borg2_all
* Undo a comment?
* ADd borg2
* Update notebook
* Update nb
* Add external halo catalogue
* Add MDPL2
* Add BORG2 density profile plot
* Add more params
* Add comments
2024-04-10 11:34:07 +02:00
Richard Stiskalek
ee222cd010
Fix overlap runs ( #125 )
...
* Update nb
* Update script
* Update script
* Rename
* Update script
* Update script
* Remove warning
* Ignore minors when extracting MAH
* Fix paths bug
* Move notebooks
* Move files
* Rename and delete things
* Rename file
* Move file
* Rename things
* Remove old print statement
* Add basic MAH plot
* Add random MAH path
* Output snapshot numbers
* Add MAH random extraction
* Fix redshift bug
* Edit script
* Add extracting random MAH
* Little updates
* Add CB2 redshift
* Add some caching
* Add diagnostic plots
* Add caching
* Minor updates
* Update nb
* Update notebook
* Update script
* Add Sorce randoms
* Add CB2 varysmall
* Update nb
* Update nb
* Update nb
* Use catalogue HMF
* Move definition of radec2galactic
* Update nb
* Update import
* Update import
* Add galatic coords to catalogues
* Update nb
2024-04-08 11:23:21 +02:00
Richard Stiskalek
da43031877
Tests on mock PV catalogues ( #123 )
...
* Rename nb
* Add nb
* Update scrtip
* Update script
* Add reading of CB2 mocks
* CB2 mocks support
* Add mock generator
* Add mock support
* Add CB2 mock support
* Update nb for mocks
* Update script
* Update nb
* Update nbs
2024-04-02 00:19:14 +02:00
Richard Stiskalek
29b37172fa
Add SFI groups ( #121 )
...
* Update LOS sampling
* Bring SD back to speed
* Update nb
* Update script
* Update requirements
* Update flow chi2 calc
* Update script
* Add support for SFI groups
* Update plot
* Update script
* Update script
2024-03-26 15:11:04 +01:00
Richard Stiskalek
27c1f9249b
Observer velocity script ( #120 )
...
* Rename script
* Delete scripts
* Add script
* Edit script
* Add script
* Update nb
* Update plotting
* Update .gitignore
* Update nb
* Update nb
* Add option to keep beta fixed
2024-03-26 10:42:53 +01:00
Richard Stiskalek
4093186f9a
Add z_obs output ( #119 )
...
* Update SN model to output zobs too
* Add TF predicted zobs
* Add imoprt
* Update nb
* Calculate chi2
* Update nb
* Update script
2024-03-22 18:10:40 +01:00
Richard Stiskalek
f7285b2600
More flow ( #118 )
...
* Add GoF calculation
* Add import
* Add base flow
* Add reading of ndata
* Update nb
* Update plotting
* Update script
* Update plots
* Updaet plo
* Add script
* Update nb
* Update nb
* Update script
* Update script
* Update nb
* Remove imports
* Improve labelling
* Improve flow calibration
* Add bulk flow plots
* Update flow
* Update scrit
* Calculate more radial steps
* Update bulk
* Update script
* Update nb
2024-03-21 16:50:37 +01:00
rstiskalek
a9cb8943d6
Update script
2024-03-19 14:36:09 +00:00
Richard Stiskalek
0a859a9a06
Write particles to ASCII ( #117 )
...
* Add option to output high-resolution particles only
* Add ASCII writing of simulatios
2024-03-19 09:23:52 +01:00
Richard Stiskalek
fb4abebeb6
Add more flow modelling ( #115 )
...
* Add SN calibration model
* Update imports
* Scale Carrick field
* Minor updates to flow validation
* Update script
* Update flow model
* Add CSiBORG2
* Add CSiboRG2 params
* Update imports
* Add regular grid interpolator to LOS
* Add nb
* Remove old code
* Update scripts
* Minor updates
* Minor updates
* Add TF
* Minor update
* Update notebook
* Update imports
* Add scan and loss of numpyro
* Add Pantheon
* Update svript
* Updaten b
* Add model loader
* Add jackknife
* Add evidence
* Update dr
* Add BIC to the flow model
* Update srcipt
* Update nb
* Update nb
* Update scripts
2024-03-16 17:02:00 +00:00
Richard Stiskalek
a65e3cb15b
Add simple distance flow model ( #114 )
...
* Add imports
* Add field LOS paths
* Add basic flow model
* Edit script
* Add nb
* Add nb
* Update nb
* Add some docs
* Add RA reading
* Add imoprts
* Updates to the flow model
* Update script
* Bring back A2
* Update imports
* Update imports
* Add Carrick to ICs
* Add Carrick boxsize
* Add Carrick and fix minor bugs
* Add Carrick box
* Update script
* Edit imports
* Add fixed flow!
* Update omega_m and add it
* Update nb
* Update nb
* Update nb
* Remove old print statements
* Update params
* Add thinning of chains
* Add import
* Add flow validation script
* Add submit script
* Add ksmooth
* Update nb
* Update params
* Update script
* Update string
* Move where distributions are defined
* Add density bias parameter
* Add lognorm mean
* Update scripts
* Update script
2024-03-08 10:44:19 +00:00
Richard Stiskalek
fb93f85543
Make sure dumpfolder created only on rank 0
2024-02-27 13:28:41 +00:00
Richard Stiskalek
66d9f46919
Evaluate LOS distances ( #113 )
...
* Add field_los
* fix typo
* add fix bug
* bug fixes
* Add docs
* Add more docs
2024-02-27 12:40:52 +00:00
Richard Stiskalek
1c736aaede
Density field tests ( #110 )
...
* Add imports
* Remove file
* Add boxsize argument
* Add script
* Update script
* Edit script
* Add nbs
2024-02-26 12:36:29 +00:00
Richard Stiskalek
f0ab6fc9b4
Add TNG field ( #108 )
...
* Add TNG catalogue script
* Add imoprt
* Add TNG box
* Add import
* Fix little bug
* Add TNG300-1
* Add shell scripts
* Organize .gitignore
* Add scatter to file name
* Add argument scatter
* Add threshold on mass
* Update nb
* Add scatter argument
* Add scattering of radial positions
* Update nb
* Update script
2024-02-07 09:11:49 +00:00
Richard Stiskalek
9e4b34f579
Overlap fixing and more ( #107 )
...
* Update README
* Update density field reader
* Update name of SDSSxALFAFA
* Fix quick bug
* Add little fixes
* Update README
* Put back fit_init
* Add paths to initial snapshots
* Add export
* Remove some choices
* Edit README
* Add Jens' comments
* Organize imports
* Rename snapshot
* Add additional print statement
* Add paths to initial snapshots
* Add masses to the initial files
* Add normalization
* Edit README
* Update README
* Fix bug in CSiBORG1 so that does not read fof_00001
* Edit README
* Edit README
* Overwrite comments
* Add paths to init lag
* Fix Quijote path
* Add lagpatch
* Edit submits
* Update README
* Fix numpy int problem
* Update README
* Add a flag to keep the snapshots open when fitting
* Add a flag to keep snapshots open
* Comment out some path issue
* Keep snapshots open
* Access directly snasphot
* Add lagpatch for CSiBORG2
* Add treatment of x-z coordinates flipping
* Add radial velocity field loader
* Update README
* Add lagpatch to Quijote
* Fix typo
* Add setter
* Fix typo
* Update README
* Add output halo cat as ASCII
* Add import
* Add halo plot
* Update README
* Add evaluating field at radial distanfe
* Add field shell evaluation
* Add enclosed mass computation
* Add BORG2 import
* Add BORG boxsize
* Add BORG paths
* Edit run
* Add BORG2 overdensity field
* Add bulk flow clauclation
* Update README
* Add new plots
* Add nbs
* Edit paper
* Update plotting
* Fix overlap paths to contain simname
* Add normalization of positions
* Add default paths to CSiBORG1
* Add overlap path simname
* Fix little things
* Add CSiBORG2 catalogue
* Update README
* Add import
* Add TNG density field constructor
* Add TNG density
* Add draft of calculating BORG ACL
* Fix bug
* Add ACL of enclosed density
* Add nmean acl
* Add galaxy bias calculation
* Add BORG acl notebook
* Add enclosed mass calculation
* Add TNG300-1 dir
* Add TNG300 and BORG1 dir
* Update nb
2024-01-30 16:14:07 +00:00
Richard Stiskalek
1a5477805a
Update evaluate density scripts ( #105 )
...
* Edit docs
* Updated interpolated field paths
* Update field sampling script
* Add comments about flipping fields
* Fix little typo
* Edit docs
* Edit hard-coded values
* Fix paths issue
* Add docs
* Switch uncorrected dist to corrected
* Improve error message
* Convert numpy int to Python int
* Add flip of x and z
* Update README
* Edit README
* Fix bug in velocity field calculation
* Fix simple bug
* Add checked axes flipping
* Fix field units
* Update README
2024-01-08 13:56:22 +01:00
Richard Stiskalek
a08109b997
Add snapshots optionally directly to catalogue ( #101 )
...
* Add isinstance check
* Add snapshot to cat
* Rename mass_kind to mass_key
* Remove import
* Fix compatiblility
* Remove old export
* Rename import
* Fix calling
* Remove paths dependence
* Update match script
* Add check if halo has no particles
2023-12-20 16:28:26 +01:00
Richard Stiskalek
eb1797e8a9
Clean density calculation ( #97 )
...
* Get rid of utils
* Clean up imports
* Move some utils here
* Rename file
* Add simname to boxsize
* Add imports
* Delete old files
* Update README
* Update imports
* Add a new draft of the density calculator
* Update fields
* Draft of new density field calculatiosn
* Add snapshot
* Add boxsizes
* Little updates
* Bring back utils
* Edit docstrings
* Edits imports
* Add progress on snapshots
* edit improts
* add basic snapshot catalogue
* Add support for CSiBORG2 snapshot reader
* add paths to fofcat for csiborg2
* Add more imports
* Add more boxsize
* Add more imports
* Add field readers
* Simplify field paths
* Fix typo
* Add observer vp
* Clean up density field calculation
* Add a short note
* Edit args
* Remove old comments
* Edit docs
* Remove blank line
* Stop flipping RAMSES
* Remove comment
* Edit desc
* Remove normalization
* Remove old dist array
* Remove non-volume weighting
* Remove non-volume weight
* Add ignore of flake8 notebooks
* Fix path typo
* Fix units
* Edit paths docs
* Update nb
2023-12-18 18:09:08 +01:00
Richard Stiskalek
41c22e2166
Improve observer peculiar velocity ( #96 )
...
* Fix peculiar velocity cacl
* Move files
* Remove import
2023-12-14 00:40:07 +00:00
rstiskalek
832d943fe7
Update not
2023-12-13 20:48:55 +00:00
