Commit graph

6 commits

Author SHA1 Message Date
rstiskalek
73ffffb826 Move files 2024-07-13 21:57:06 +01:00
Richard Stiskalek
779f2e76ac
Calculate upglade redshifts (#128)
* Update redshift reading

* Add helio to CMB redshift

* Update imports

* Update nb

* Run for Quijote

* Add script

* Update

* Update .gitignore

* Update imports

* Add Peery estimator

* Add bulk flow scripts

* Update typs

* Add comment

* Add blank space

* Update submission script

* Update description

* Add barriers

* Update nb

* Update nb

* Rename script

* Move to old

* Update imports

* Add nb

* Update script

* Fix catalogue key

* Update script

* Update submit

* Update comment

* Update .gitignore

* Update nb

* Update for stationary obsrevers

* Update submission

* Add nb

* Add better verbose control

* Update nb

* Update submit

* Update nb

* Add SN errors

* Add draft of the script

* Update verbosity flags

* Add submission script

* Debug script

* Quickfix

* Remove comment

* Update nb

* Update submission

* Update nb

* Processed UPGLADE
2024-06-20 14:33:00 +01:00
Richard Stiskalek
e972f8e3f2
Add pynbody and other support (#92)
* Simplify box units

* Move old scripts

* Add printing

* Update readers

* Disable boundscheck

* Add new ordering

* Clean up imports

* Enforce dtype and add mass to quijote

* Simplify print statements

* Fix little typos

* Fix key bug

* Bug fixing

* Delete boring comments

* Improve ultimate clumps for PHEW

* Delete boring comments

* Add basic reading

* Remove 0th index HID

* Add flipping of X and Z

* Updates to halo catalogues

* Add ordered caching

* Fix flipping

* Add new flags

* Fix PHEW empty clumps

* Stop over-wrriting

* Little improvements to angular neighbours

* Add catalogue masking

* Change if-else statements

* Cache only filtered data

* Add PHEW cats

* Add comments

* Sort imports

* Get Quijote workign

* Docs

* Add HMF calculation

* Move to old

* Fix angular

* Add great circle distance

* Update imports

* Update impotrts

* Update docs

* Remove unused import

* Fix a quick bug

* Update compatibility

* Rename files

* Renaming

* Improve compatiblity

* Rename snapsht

* Fix snapshot bug

* Update interface

* Finish updating interface

* Update all paths

* Add old scripts

* Add basic halo

* Update imports

* Improve snapshot processing

* Update ordering

* Fix how CM positions accessed

* Add merger paths

* Add imports

* Add merger reading

* Add making a merger tree

* Add a basic merger tree reader

* Add imports

* Add main branch walking + comments + debuggin

* Get tree running

* Add working merger tree walking along main branch

* Add units conversion for merger data

* Add hid_to_array_index

* Update merger tree

* Add mergertree mass to PHEWcat

* Edit comments

* Add this to track changes...

* Fix a little bug

* Add mergertree mass

* Add cache clearing

* Improve summing substructure code

* Littbe bug

* Little updates to the merger tree reader

* Update .giignore

* Add box selection

* Add optional deletingf of a group

* add to keep track of changes

* Update changes

* Remove

* Add manual tracker

* Fix bug

* Add m200c_to_r200c

* Add manual halo tracking

* Remove skipped snapshots

* update cosmo params to match csiborg

* remove old comments

* Add SDSSxALFALFA

* Fix bugs

* Rename

* Edit paths

* Updates

* Add comments

* Add comment

* Add hour conversion

* Add imports

* Add new observation class

* Add selection

* Add imports

* Fix small bug

* Add field copying for safety

* Add matching to survey without masking

* Add P(k) calculation

* Add nb

* Edit comment

* Move files

* Remove merger import

* Edit setup.yp

* Fix typo

* Edit import warnigns

* update nb

* Update README

* Update README

* Update README

* Add skeleton

* Add skeleton
2023-12-07 14:23:32 +00:00
Richard Stiskalek
fb4b4edf19
Quijote snapshots support (#77)
* Renaming

* Edit docs

* Delete old function

* Add a blank space

* Rename particle reader

* Add comments

* Rename

* Rename

* edit get_snapshots

* More renaming

* Remove old correction

* Add import

* Add basics of the Quijote reader

* Add a blank space

* Fix paths

* Rename function

* Fix HID and path

* Add more FoF reading

* Move definition

* Adding arguments

* Renaming

* Add kwargs for backward comp

* FoF Quijote return only hids

* Add sorting of quijote

* Add path to CSiBORG ICs snapshot

* Add support for Quijote

* initmatch paths for quijote

* Add kwargs

* Fix blank lines

* Rename kwarg

* Remove unused import

* Remove hardcoded numbers

* Update for Quijote

* Do not store velocities in QUijote ICs

* Box units mass Quijote

* Fix typo

* Ensure particles are not right at the edge

* Add structfit paths for QUuijote

* Basic CSiBORG units

* Add more quijote halo reading

* Add Quijote fitting

* Docs changes

* Docs changes
2023-07-27 18:41:00 +02:00
Richard Stiskalek
e08c741fc8
Improving halo fits (#76)
* Add periodic distances

* Little corrections

* Fix little bug

* Modernise the script

* Small updates

* Remove clump

* Add new halo routines

* Fix weights

* Modernise the script

* Add check ups on convergence

* More convergence check ups

* Edit bounds

* Add default argument

* Update fit heuristic and NaNs

* Change maxiter

* Switch NFW minimization to log-sapce

* Remove print statement

* Turn convert_from_box abstract property required for all boxes.

* Move files

* Simplify script

* Improve the argument parser

* Remove optinal argument

* Improve argument parser

* Add a minimum concentration limit
2023-07-25 16:12:58 +02:00
Richard Stiskalek
2185846e90
CDF for nearest neighbour (#63)
* Updat ebounds

* fix mistake

* add plot script

* fix which sims

* Add Poisson

* Just docs

* Hide things to __main__

* Rename paths

* Move old script

* Remove radpos

* Paths renaming

* Paths renaming

* Remove trunk stuff

* Add import

* Add nearest neighbour search

* Add Quijote fiducial indices

* Add final snapshot matching

* Add fiducial observer selection

* add boxsizes

* Add reading functions

* Little stuff

* Bring back the fiducial observer

* Add arguments

* Add quijote paths

* Add notes

* Get this running

* Add yaml

* Remove Poisson stuff

* Get the 2PCF script running

* Add not finished htings

* Remove comment

* Verbosity only on 0th rank!

* Update plotting style

* Add nearest neighbour CDF

* Save radial distance too

* Add centres

* Add basic plotting
2023-05-21 22:46:28 +01:00