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Quijote snapshots support (#77)

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* Renaming

* Edit docs

* Delete old function

* Add a blank space

* Rename particle reader

* Add comments

* Rename

* Rename

* edit get_snapshots

* More renaming

* Remove old correction

* Add import

* Add basics of the Quijote reader

* Add a blank space

* Fix paths

* Rename function

* Fix HID and path

* Add more FoF reading

* Move definition

* Adding arguments

* Renaming

* Add kwargs for backward comp

* FoF Quijote return only hids

* Add sorting of quijote

* Add path to CSiBORG ICs snapshot

* Add support for Quijote

* initmatch paths for quijote

* Add kwargs

* Fix blank lines

* Rename kwarg

* Remove unused import

* Remove hardcoded numbers

* Update for Quijote

* Do not store velocities in QUijote ICs

* Box units mass Quijote

* Fix typo

* Ensure particles are not right at the edge

* Add structfit paths for QUuijote

* Basic CSiBORG units

* Add more quijote halo reading

* Add Quijote fitting

* Docs changes

* Docs changes
This commit is contained in:
Richard Stiskalek 2023-07-27 18:41:00 +02:00 • committed by GitHub
parent e08c741fc8
commit fb4b4edf19
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18 changed files with 800 additions and 300 deletions
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9
scripts_plots/plot_data.py
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@ -352,7 +352,7 @@ def plot_projected_field(kind, nsim, grid, in_rsp, smooth_scale, MAS="PCS",
"""
print(f"Plotting projected field `{kind}`. ", flush=True)
paths = csiborgtools.read.Paths(**csiborgtools.paths_glamdring)
nsnap = max(paths.get_snapshots(nsim))
nsnap = max(paths.get_snapshots(nsim, "csiborg"))
box = csiborgtools.read.CSiBORGBox(nsnap, nsim, paths)
if kind == "overdensity":
@ -563,10 +563,10 @@ def plot_sky_distribution(field, nsim, grid, nside, smooth_scale=None,
Whether to save the figure as a pdf.
"""
paths = csiborgtools.read.Paths(**csiborgtools.paths_glamdring)
nsnap = max(paths.get_snapshots(nsim))
nsnap = max(paths.get_snapshots(nsim, "csiborg"))
box = csiborgtools.read.CSiBORGBox(nsnap, nsim, paths)
if kind == "overdensity":
if field== "overdensity":
field = load_field("density", nsim, grid, MAS=MAS, in_rsp=False,
smooth_scale=smooth_scale)
density_gen = csiborgtools.field.DensityField(box, MAS)
@ -658,7 +658,8 @@ if __name__ == "__main__":
if False:
paths = csiborgtools.read.Paths(**csiborgtools.paths_glamdring)
d = csiborgtools.read.read_h5(paths.particles(7444))["particles"]
d = csiborgtools.read.read_h5(paths.particles(7444, "csiborg"))
d = d["particles"]
plt.figure()
plt.hist(d[:100000, 4], bins="auto")