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Quijote snapshots support (#77)

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* Renaming

* Edit docs

* Delete old function

* Add a blank space

* Rename particle reader

* Add comments

* Rename

* Rename

* edit get_snapshots

* More renaming

* Remove old correction

* Add import

* Add basics of the Quijote reader

* Add a blank space

* Fix paths

* Rename function

* Fix HID and path

* Add more FoF reading

* Move definition

* Adding arguments

* Renaming

* Add kwargs for backward comp

* FoF Quijote return only hids

* Add sorting of quijote

* Add path to CSiBORG ICs snapshot

* Add support for Quijote

* initmatch paths for quijote

* Add kwargs

* Fix blank lines

* Rename kwarg

* Remove unused import

* Remove hardcoded numbers

* Update for Quijote

* Do not store velocities in QUijote ICs

* Box units mass Quijote

* Fix typo

* Ensure particles are not right at the edge

* Add structfit paths for QUuijote

* Basic CSiBORG units

* Add more quijote halo reading

* Add Quijote fitting

* Docs changes

* Docs changes
This commit is contained in:
Richard Stiskalek 2023-07-27 18:41:00 +02:00 • committed by GitHub
parent e08c741fc8
commit fb4b4edf19
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18 changed files with 800 additions and 300 deletions
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4
scripts/old/fit_profiles.py
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@ -58,10 +58,10 @@ for i, nsim in enumerate(nsims):
if rank == 0:
now = datetime.now()
print(f"{now}: calculating {i}th simulation `{nsim}`.", flush=True)
nsnap = max(paths.get_snapshots(nsim))
nsnap = max(paths.get_snapshots(nsim, "csiborg"))
box = csiborgtools.read.CSiBORGBox(nsnap, nsim, paths)
f = csiborgtools.read.read_h5(paths.particles(nsim))
f = csiborgtools.read.read_h5(paths.particles(nsim, "csiborg"))
particles = f["particles"]
clump_map = f["clumpmap"]
clid2map = {clid: i for i, clid in enumerate(clump_map[:, 0])}

2
scripts/old/pre_mmain.py
View file

@ -38,7 +38,7 @@ mmain_reader = csiborgtools.read.MmainReader(paths)
def do_mmain(nsim):
nsnap = max(paths.get_snapshots(nsim))
nsnap = max(paths.get_snapshots(nsim, "csiborg"))
# NOTE: currently works for highest snapshot anyway
mmain, ultimate_parent = mmain_reader.make_mmain(nsim, verbose=False)
numpy.savez(paths.mmain(nsnap, nsim),