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CSiBORG FoF switch (#75)

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* Add moving FoF membership files

* add FoF membership path

* Add notes where its PHEW

* Add FoF catalogue path

* Correct typo

* Add more functionalities

* Make work with halo IDs from FoF

* Edit print statement

* Fix copy bug

* copy

* Add FoF catalogue reading

* Clean up script

* Fix typo

* Little edits

* Fix naming convention

* Rename key

* Remove loading substructure particles

* Rename CSiBORG Cat

* Rename clumps cat

* Rename cat

* Remove misplaced import

* Switch to halos

* rm import

* structfit of only halos

* Add FoF halo reading

* Add a short comment

* Fix __getitem__ to work with int

* Fix problems

* Improve __getitem__

* Add more conversion

* Fix indexing

* Fix __getitem__ assertion

* Fix numbers

* Rename

* Fix verbosity flags

* Add full Quijote HMF option

* Add plot of Quijote only

* Add quijote full paths

* Fix the fit_init script

* Renam arg

* Update .gitignore

* add default argument name

* Change default verbosity flag

* Modernise script structure

* Fix dictionary

* Fix reading to include m200c

* Modernise script

* Add args
This commit is contained in:
Richard Stiskalek 2023-07-24 14:10:21 +02:00 • committed by GitHub
parent fcd1a6b321
commit eb8d070fff
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19 changed files with 659 additions and 466 deletions
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4
scripts/utils.py
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@ -81,7 +81,7 @@ def read_single_catalogue(args, config, nsim, run, rmax, paths, nobs=None):
Returns
-------
cat : csiborgtools.read.HaloCatalogue or csiborgtools.read.QuijoteHaloCatalogue # noqa
cat : csiborgtools.read.CSiBORGHaloCatalogue or csiborgtools.read.QuijoteHaloCatalogue # noqa
Halo catalogue with selection criteria applied.
"""
selection = config.get(run, None)
@ -89,7 +89,7 @@ def read_single_catalogue(args, config, nsim, run, rmax, paths, nobs=None):
raise KeyError(f"No configuration for run {run}.")
# We first read the full catalogue without applying any bounds.
if args.simname == "csiborg":
cat = csiborgtools.read.HaloCatalogue(nsim, paths)
cat = csiborgtools.read.CSiBORGHaloCatalogue(nsim, paths)
else:
cat = csiborgtools.read.QuijoteHaloCatalogue(nsim, paths, nsnap=4)
if nobs is not None: