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CSiBORG FoF switch (#75)

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* Add moving FoF membership files

* add FoF membership path

* Add notes where its PHEW

* Add FoF catalogue path

* Correct typo

* Add more functionalities

* Make work with halo IDs from FoF

* Edit print statement

* Fix copy bug

* copy

* Add FoF catalogue reading

* Clean up script

* Fix typo

* Little edits

* Fix naming convention

* Rename key

* Remove loading substructure particles

* Rename CSiBORG Cat

* Rename clumps cat

* Rename cat

* Remove misplaced import

* Switch to halos

* rm import

* structfit of only halos

* Add FoF halo reading

* Add a short comment

* Fix __getitem__ to work with int

* Fix problems

* Improve __getitem__

* Add more conversion

* Fix indexing

* Fix __getitem__ assertion

* Fix numbers

* Rename

* Fix verbosity flags

* Add full Quijote HMF option

* Add plot of Quijote only

* Add quijote full paths

* Fix the fit_init script

* Renam arg

* Update .gitignore

* add default argument name

* Change default verbosity flag

* Modernise script structure

* Fix dictionary

* Fix reading to include m200c

* Modernise script

* Add args
This commit is contained in:
Richard Stiskalek 2023-07-24 14:10:21 +02:00 • committed by GitHub
parent fcd1a6b321
commit eb8d070fff
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19 changed files with 659 additions and 466 deletions
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10
scripts/match_singlematch.py
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@ -30,7 +30,7 @@ except ModuleNotFoundError:
def pair_match(nsim0, nsimx, sigma, smoothen, verbose):
from csiborgtools.read import HaloCatalogue, read_h5
from csiborgtools.read import CSiBORGHaloCatalogue, read_h5
paths = csiborgtools.read.Paths(**csiborgtools.paths_glamdring)
smooth_kwargs = {"sigma": sigma, "mode": "constant", "cval": 0.0}
@ -40,10 +40,10 @@ def pair_match(nsim0, nsimx, sigma, smoothen, verbose):
# Load the raw catalogues (i.e. no selection) including the initial CM
# positions and the particle archives.
bounds = {"totpartmass": (1e12, None)}
cat0 = HaloCatalogue(nsim0, paths, load_initial=True, bounds=bounds,
with_lagpatch=True, load_clumps_cat=True)
catx = HaloCatalogue(nsimx, paths, load_initial=True, bounds=bounds,
with_lagpatch=True, load_clumps_cat=True)
cat0 = CSiBORGHaloCatalogue(nsim0, paths, load_initial=True, bounds=bounds,
with_lagpatch=True, load_clumps_cat=True)
catx = CSiBORGHaloCatalogue(nsimx, paths, load_initial=True, bounds=bounds,
with_lagpatch=True, load_clumps_cat=True)
clumpmap0 = read_h5(paths.particles(nsim0))["clumpmap"]
parts0 = read_h5(paths.initmatch(nsim0, "particles"))["particles"]