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Add marginalization over boxes (#131)

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* Parallelize over simulations

* Update docs

* Update dependency

* Update imports

* Add adtitional dependencies

* Update .gitignore

* Update ERADME

* Simplify numpyro GOF

* Speed up GOF

* Deepcopy samples

* Update scripts

* Add GPU acceleration

* Select boxes

* Update script

* Optionally sample beta

* Fix old code

* Simplify code

* Start saving log posterior

* Start popping log_likeliood

* Add imports

* Add converting samples

* Fix sctipt name

* Add evidence with harmonic

* Remove comment

* Update imports

* Update imports so that pylians not required

* Stop requiring Pylians to be installed

* Update submission scripts for loops

* Update nb

* Update nb

* Add Manticore boxes

* Add verbosity flag

* Add bulk flow

* Update script

* Update nb

* Update normalization

* Update submit

* Update nb
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Richard Stiskalek 2024-06-26 10:43:26 +01:00 • committed by GitHub
parent ffaf92cd4b
commit ce55a2b47e
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16 changed files with 1436 additions and 1290 deletions
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21
setup.py
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@ -3,15 +3,18 @@ from setuptools import find_packages, setup
BUILD_REQ = ["numpy", "scipy"]
INSTALL_REQ = BUILD_REQ
INSTALL_REQ += [
"numba",
"tqdm",
"healpy",
"astropy",
"scikit-learn",
"h5py",
"pynbody",
"joblib",
]
"astropy",
"colossus",
"h5py",
"healpy",
"joblib",
"mpi4py",
"numba",
"numpyro",
"quadax",
"scikit-learn",
"tqdm",
]
setup(
name="csiborgtools",