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Periodic neighbours (#84)

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* Edit the HMF plot

* Add periodic dist 2 points

* Add boxsize to RVSSphere

* Add periodic distance

* Adding periodic distance

* Add imports

* Change arguments

* Update bounds

* Lower min number of particles

* Change kwargs

* Add paths overlap quijote

* Add some comments
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Richard Stiskalek 2023-08-08 12:19:40 +02:00 • committed by GitHub
parent c7e447df01
commit c7b600d0ad
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14 changed files with 196 additions and 61 deletions
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15
scripts_plots/plot_data.py
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@ -178,6 +178,7 @@ def plot_hmf(pdf=False):
csiborg5511[x > 3e15] = numpy.nan
with plt.style.context(plt_utils.mplstyle):
cols = plt.rcParams["axes.prop_cycle"].by_key()["color"]
fig, ax = plt.subplots(nrows=2, sharex=True,
figsize=(3.5, 2.625 * 1.25),
gridspec_kw={"height_ratios": [1, 0.45]})
@ -186,15 +187,15 @@ def plot_hmf(pdf=False):
# Upper panel data
mean_csiborg = numpy.mean(csiborg_counts, axis=0)
std_csiborg = numpy.std(csiborg_counts, axis=0)
ax[0].plot(x, mean_csiborg, label="CSiBORG")
ax[0].plot(x, mean_csiborg, label="CSiBORG", c=cols[0])
ax[0].fill_between(x, mean_csiborg - std_csiborg,
mean_csiborg + std_csiborg, alpha=0.5)
mean_csiborg + std_csiborg, alpha=0.5, color=cols[0])
mean_quijote = numpy.mean(quijote_counts, axis=0)
std_quijote = numpy.std(quijote_counts, axis=0)
ax[0].plot(x, mean_quijote, label="Quijote")
ax[0].plot(x, mean_quijote, label="Quijote", c=cols[1])
ax[0].fill_between(x, mean_quijote - std_quijote,
mean_quijote + std_quijote, alpha=0.5)
mean_quijote + std_quijote, alpha=0.5, color=cols[1])
ax[0].plot(x, csiborg5511, label="CSiBORG 5511", c="k", ls="--")
std5511 = numpy.sqrt(csiborg5511)
@ -204,9 +205,11 @@ def plot_hmf(pdf=False):
log_y = numpy.log10(mean_csiborg / mean_quijote)
err = numpy.sqrt((std_csiborg / mean_csiborg / numpy.log(10))**2
+ (std_quijote / mean_quijote / numpy.log(10))**2)
ax[1].plot(x, 10**log_y, c="gray")
ax[1].plot(x, 10**log_y, c=cols[0])
ax[1].fill_between(x, 10**(log_y - err), 10**(log_y + err), alpha=0.5,
color="gray")
color=col[0])
ax[1].plot(x, csiborg5511 / mean_quijote, c="k", ls="--")
# Labels and accesories
ax[1].axhline(1, color="k", ls="--",