Power spectrum stuff (#16)

* add autok1d

* update TODO

* add basic cross pk

* del blank line

* fix small bugs

* fix loop bug

* rm nbs

* edit docstring

* Update TODO

* get rid of verbose flag

* take all ICs

* attempt better memory

* simplify ASCII dump

* rm verbose statement to get rid of bugs!

* close fortran files

* add MAS options

* add boxsize setter

* Move comment up

* paths chagne

* Update TODO

* Update TODO

* Forgotten units in Xpk

* Attempt at fixing the distance bug

* Update TODO

* Update TODO

* Remove comment

* add summary reader

* Update gitignore

README.md

@@ -1,20 +1,27 @@
 # CSiBORG tools
 
+## Questions to answer
+- How well can observed clusters be matched to CSiBORG? Do their masses agree?
+- Is the number of clusters in CSiBORG consistent?
+- Are any observed clusters suspiciously missing in CSiBORG?
+
+
 ## Short-term TODO
-- [ ] Get `powmes` working and compare its power spectrum to `Pylians`.
-- [ ] Check alignment of the angular momentum
-- [x] Make sure I am not taking halos outside of the well-resolved region.
-- [x] Calculate the gravitational potential.
-- [x] Add the gravitational field calculation.
+- [x] Add code to calculate the cross-correlation for resolved region only.
+- [ ] Calculate the spectra for all 101 boxes and visualise them.
+- [ ] See about the $z=70$ particles.
 
 
 ## Long-term TODO
 - [ ] Calculate the cross-correlation in CSiBORG. Should see the scale of the constraints?
 - [ ] Find the distribution of particles in the first snapshot
 - [ ] Implement a custom model for matchin galaxies to halos.
-- [x] Calculate DM environmental properties.
 
 
 ## Open questions
 - What scaling of the search region? No reason for it to be a multiple of $R_{200c}$.
 - Begin extracting the DM environmental properties at galaxy positions?
+
+
+## Notes
+- New sims with part files in initial snapshot: `/mnt/extraspace/hdesmond/ramses_out_7468_new`. Also numbers 7588, 8020, 8452, 8836.