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Add density field plot and start preparing CSiBORG2 (#94)

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* Add RAMSES2HDF5 conversion

* Upload changes

* Clean up

* More clean up

* updates

* Little change

* pep9

* Add basic SPH calculation for a snapshot

* Add submit script

* Remove echo

* Little changes

* Send off changes

* Little formatting

* Little updates

* Add nthreads argument

* Upload chagnes

* Add nthreads arguemnts

* Some local changes..

* Update scripts

* Add submission script

* Update script

* Update params

* Rename CSiBORGBox to CSiBORG1box

* Rename CSiBORG1 reader

* Move files

* Rename folder again

* Add basic plotting here

* Add new skeletons

* Move def

* Update nbs

* Edit directories

* Rename files

* Add units to converted snapshots

* Fix empty dataset bug

* Delete file

* Edits to submission scripts

* Edit paths

* Update .gitignore

* Fix attrs

* Update weighting

* Fix RA/dec bug

* Add FORNAX cluster

* Little edit

* Remove boxes since will no longer need

* Move func back

* Edit to include sort by membership

* Edit paths

* Purge basic things

* Start removing

* Bring file back

* Scratch

* Update the rest

* Improve the entire file

* Remove old things

* Remove old

* Delete old things

* Fully updates

* Rename file

* Edit submit script

* Little things

* Add print statement

* Add here cols_to_structured

* Edit halo cat

* Remove old import

* Add comment

* Update paths manager

* Move file

* Remove file

* Add chains
This commit is contained in:
Richard Stiskalek 2023-12-13 16:08:25 +00:00 • committed by GitHub
parent 6042a87111
commit aaa14fc880
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30 changed files with 1682 additions and 1728 deletions
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scripts_independent/run_process_snapshot.py Normal file
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# Copyright (C) 2023 Richard Stiskalek
# This program is free software; you can redistribute it and/or modify it
# under the terms of the GNU General Public License as published by the
# Free Software Foundation; either version 3 of the License, or (at your
# option) any later version.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General
# Public License for more details.
#
# You should have received a copy of the GNU General Public License along
# with this program; if not, write to the Free Software Foundation, Inc.,
# 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
from os import system
if __name__ == "__main__":
# Quijote chains
chains = [1]
simname = "quijote"
mode = 2
env = "/mnt/zfsusers/rstiskalek/csiborgtools/venv_csiborg/bin/python"
memory = 64
for chain in chains:
out = f"output_{simname}_{chain}_%j.out"
cmd = f"addqueue -q berg -o {out} -n 1x1 -m {memory} {env} process_snapshot.py --nsim {chain} --simname {simname} --mode {mode}" # noqa
print(cmd)
system(cmd)
print()