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Add density field plot and start preparing CSiBORG2 (#94)

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* Add RAMSES2HDF5 conversion

* Upload changes

* Clean up

* More clean up

* updates

* Little change

* pep9

* Add basic SPH calculation for a snapshot

* Add submit script

* Remove echo

* Little changes

* Send off changes

* Little formatting

* Little updates

* Add nthreads argument

* Upload chagnes

* Add nthreads arguemnts

* Some local changes..

* Update scripts

* Add submission script

* Update script

* Update params

* Rename CSiBORGBox to CSiBORG1box

* Rename CSiBORG1 reader

* Move files

* Rename folder again

* Add basic plotting here

* Add new skeletons

* Move def

* Update nbs

* Edit directories

* Rename files

* Add units to converted snapshots

* Fix empty dataset bug

* Delete file

* Edits to submission scripts

* Edit paths

* Update .gitignore

* Fix attrs

* Update weighting

* Fix RA/dec bug

* Add FORNAX cluster

* Little edit

* Remove boxes since will no longer need

* Move func back

* Edit to include sort by membership

* Edit paths

* Purge basic things

* Start removing

* Bring file back

* Scratch

* Update the rest

* Improve the entire file

* Remove old things

* Remove old

* Delete old things

* Fully updates

* Rename file

* Edit submit script

* Little things

* Add print statement

* Add here cols_to_structured

* Edit halo cat

* Remove old import

* Add comment

* Update paths manager

* Move file

* Remove file

* Add chains
This commit is contained in:
Richard Stiskalek 2023-12-13 16:08:25 +00:00 • committed by GitHub
parent 6042a87111
commit aaa14fc880
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GPG key ID: 4AEE18F83AFDEB23
30 changed files with 1682 additions and 1728 deletions
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11
scripts/field_prop.py
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@ -49,10 +49,11 @@ def density_field(nsim, parser_args, to_save=True):
"""
paths = csiborgtools.read.Paths(**csiborgtools.paths_glamdring)
nsnap = max(paths.get_snapshots(nsim, "csiborg"))
box = csiborgtools.read.CSiBORGBox(nsnap, nsim, paths)
box = csiborgtools.read.CSiBORG1Box(nsnap, nsim, paths)
fname = paths.processed_output(nsim, "csiborg", "halo_catalogue")
if not parser_args.in_rsp:
# TODO I removed this function
snap = csiborgtools.read.read_h5(fname)["snapshot_final"]
pos = snap["pos"]
mass = snap["mass"]
@ -94,7 +95,7 @@ def velocity_field(nsim, parser_args, to_save=True):
paths = csiborgtools.read.Paths(**csiborgtools.paths_glamdring)
nsnap = max(paths.get_snapshots(nsim, "csiborg"))
box = csiborgtools.read.CSiBORGBox(nsnap, nsim, paths)
box = csiborgtools.read.CSiBORG1Box(nsnap, nsim, paths)
fname = paths.processed_output(nsim, "csiborg", "halo_catalogue")
snap = csiborgtools.read.read_h5(fname)["snapshot_final"]
@ -127,7 +128,7 @@ def radvel_field(nsim, parser_args, to_save=True):
paths = csiborgtools.read.Paths(**csiborgtools.paths_glamdring)
nsnap = max(paths.get_snapshots(nsim, "csiborg"))
box = csiborgtools.read.CSiBORGBox(nsnap, nsim, paths)
box = csiborgtools.read.CSiBORG1Box(nsnap, nsim, paths)
vel = numpy.load(paths.field("velocity", parser_args.MAS, parser_args.grid,
nsim, parser_args.in_rsp))
@ -154,7 +155,7 @@ def potential_field(nsim, parser_args, to_save=True):
"""
paths = csiborgtools.read.Paths(**csiborgtools.paths_glamdring)
nsnap = max(paths.get_snapshots(nsim, "csiborg"))
box = csiborgtools.read.CSiBORGBox(nsnap, nsim, paths)
box = csiborgtools.read.CSiBORG1Box(nsnap, nsim, paths)
if not parser_args.in_rsp:
rho = numpy.load(paths.field(
@ -192,7 +193,7 @@ def environment_field(nsim, parser_args, to_save=True):
"""
paths = csiborgtools.read.Paths(**csiborgtools.paths_glamdring)
nsnap = max(paths.get_snapshots(nsim, "csiborg"))
box = csiborgtools.read.CSiBORGBox(nsnap, nsim, paths)
box = csiborgtools.read.CSiBORG1Box(nsnap, nsim, paths)
rho = numpy.load(paths.field(
"density", parser_args.MAS, parser_args.grid, nsim, in_rsp=False))