Add density field plot and start preparing CSiBORG2 (#94)

* Add RAMSES2HDF5 conversion

* Upload changes

* Clean up

* More clean up

* updates

* Little change

* pep9

* Add basic SPH calculation for a snapshot

* Add submit script

* Remove echo

* Little changes

* Send off changes

* Little formatting

* Little updates

* Add nthreads argument

* Upload chagnes

* Add nthreads arguemnts

* Some local changes..

* Update scripts

* Add submission script

* Update script

* Update params

* Rename CSiBORGBox to CSiBORG1box

* Rename CSiBORG1 reader

* Move files

* Rename folder again

* Add basic plotting here

* Add new skeletons

* Move def

* Update nbs

* Edit directories

* Rename files

* Add units to converted snapshots

* Fix empty dataset bug

* Delete file

* Edits to submission scripts

* Edit paths

* Update .gitignore

* Fix attrs

* Update weighting

* Fix RA/dec bug

* Add FORNAX cluster

* Little edit

* Remove boxes since will no longer need

* Move func back

* Edit to include sort by membership

* Edit paths

* Purge basic things

* Start removing

* Bring file back

* Scratch

* Update the rest

* Improve the entire file

* Remove old things

* Remove old

* Delete old things

* Fully updates

* Rename file

* Edit submit script

* Little things

* Add print statement

* Add here cols_to_structured

* Edit halo cat

* Remove old import

* Add comment

* Update paths manager

* Move file

* Remove file

* Add chains

old/cluster_crosspk.py

@@ -50,8 +50,8 @@ nproc = comm.Get_size()
 MAS = "CIC"  # mass asignment scheme
 
 paths = csiborgtools.read.Paths(**csiborgtools.paths_glamdring)
-box = csiborgtools.read.CSiBORGBox(paths)
-reader = csiborgtools.read.CSiBORGReader(paths)
+box = csiborgtools.read.CSiBORG1Box(paths)
+reader = csiborgtools.read.CSiBORG1Reader(paths)
 ics = paths.get_ics("csiborg")
 nsims = len(ics)