Aquila-Consortium/csiborgtools
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Add density field plot and start preparing CSiBORG2 (#94)

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* Add RAMSES2HDF5 conversion

* Upload changes

* Clean up

* More clean up

* updates

* Little change

* pep9

* Add basic SPH calculation for a snapshot

* Add submit script

* Remove echo

* Little changes

* Send off changes

* Little formatting

* Little updates

* Add nthreads argument

* Upload chagnes

* Add nthreads arguemnts

* Some local changes..

* Update scripts

* Add submission script

* Update script

* Update params

* Rename CSiBORGBox to CSiBORG1box

* Rename CSiBORG1 reader

* Move files

* Rename folder again

* Add basic plotting here

* Add new skeletons

* Move def

* Update nbs

* Edit directories

* Rename files

* Add units to converted snapshots

* Fix empty dataset bug

* Delete file

* Edits to submission scripts

* Edit paths

* Update .gitignore

* Fix attrs

* Update weighting

* Fix RA/dec bug

* Add FORNAX cluster

* Little edit

* Remove boxes since will no longer need

* Move func back

* Edit to include sort by membership

* Edit paths

* Purge basic things

* Start removing

* Bring file back

* Scratch

* Update the rest

* Improve the entire file

* Remove old things

* Remove old

* Delete old things

* Fully updates

* Rename file

* Edit submit script

* Little things

* Add print statement

* Add here cols_to_structured

* Edit halo cat

* Remove old import

* Add comment

* Update paths manager

* Move file

* Remove file

* Add chains
This commit is contained in:
Richard Stiskalek 2023-12-13 16:08:25 +00:00 • committed by GitHub
parent 6042a87111
commit aaa14fc880
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GPG key ID: 4AEE18F83AFDEB23
30 changed files with 1682 additions and 1728 deletions
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4
old/cluster_crosspk.py
View file

@ -50,8 +50,8 @@ nproc = comm.Get_size()
MAS = "CIC" # mass asignment scheme
paths = csiborgtools.read.Paths(**csiborgtools.paths_glamdring)
box = csiborgtools.read.CSiBORGBox(paths)
reader = csiborgtools.read.CSiBORGReader(paths)
box = csiborgtools.read.CSiBORG1Box(paths)
reader = csiborgtools.read.CSiBORG1Reader(paths)
ics = paths.get_ics("csiborg")
nsims = len(ics)

2
old/fit_profiles.py
View file

@ -59,7 +59,7 @@ for i, nsim in enumerate(nsims):
now = datetime.now()
print(f"{now}: calculating {i}th simulation `{nsim}`.", flush=True)
nsnap = max(paths.get_snapshots(nsim, "csiborg"))
box = csiborgtools.read.CSiBORGBox(nsnap, nsim, paths)
box = csiborgtools.read.CSiBORG1Box(nsnap, nsim, paths)
f = csiborgtools.read.read_h5(paths.particles(nsim, "csiborg"))
particles = f["particles"]

2
old/mv_fofmembership.py
View file

@ -96,7 +96,7 @@ def sort_fofid(nsim, verbose=True):
# Columns are halo ID, particle ID.
fof = numpy.load(fpath)
reader = csiborgtools.read.CSiBORGReader(paths)
reader = csiborgtools.read.CSiBORG1Reader(paths)
pars_extract = ["x"] # Dummy variable
__, pids = reader.read_snapshot(nsnap, nsim, pars_extract,
return_structured=False, verbose=verbose)

4
old/pre_dumppart.py
View file

@ -79,7 +79,7 @@ def main(nsim, simname, verbose):
"""
paths = csiborgtools.read.Paths(**csiborgtools.paths_glamdring)
if simname == "csiborg":
partreader = csiborgtools.read.CSiBORGReader(paths)
partreader = csiborgtools.read.CSiBORG1Reader(paths)
else:
partreader = csiborgtools.read.QuijoteReader(paths)
@ -114,7 +114,7 @@ def main(nsim, simname, verbose):
# In case of CSiBORG, we need to convert the mass and velocities from
# box units.
if simname == "csiborg":
box = csiborgtools.read.CSiBORGBox(nsnap, nsim, paths)
box = csiborgtools.read.CSiBORG1Box(nsnap, nsim, paths)
parts[:, [3, 4, 5]] = box.box2vel(parts[:, [3, 4, 5]])
parts[:, 6] = box.box2solarmass(parts[:, 6])