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Within halo work and NFW fit (#4)

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* add listing of snapshots

* change distance to comoving

* ignore cp files

* rename nb

* add str to list

* add NFW profile shapes

* add fits imports

* Rename to Nsnap

* in clumps_read only select props

* make clumpid int

* expand doc

* add import

* edit readme

* distribute halos

* add profile & posterior

* add import

* add import

* add documentation

* add rvs and init guess

* update todo

* update nb

* add file

* return end index too

* change clump_ids format to int32

* skeleton of dump particle

* update nb

* add func to drop 0 clump indxs parts

* add import

* add halo dump

* switch to float32

* Update TODO

* update TODO

* add func that loads a split

* add halo object

* Rename to clump

* make post work with a clump

* add optimiser

* add Nsplits

* ignore submission scripts

* ignore .out

* add dumppath

* add job splitting

* add split halos script

* rename file

* renaem files

* rm file

* rename imports

* edit desc

* add pick clump

* add number of particles

* update TODO

* update todo

* add script

* add dumping

* change dumpdir structure

* change dumpdir

* add import

* Remove tqdm

* Increase the number of splits

* rm shuffle option

* Change to remove split

* add emojis

* fix part counts in splits

* change num of splits

* rm with particle cut

* keep splits

* fit only if 10 part and more

* add min distance

* rm warning about not set vels

* update TODO

* calculate rho0 too

* add results collection

* add import

* add func to combine splits

* update TODO

* add extract cols

* update nb

* update TODO
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Richard Stiskalek 2022-10-30 20:16:56 +00:00 • committed by GitHub
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README.md
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# CSiBORG analysis tools
# CSiBORG analysis tools :dart:
## TODO :scroll:
- [ ] Calculate $\left\{M_{\rm vir}, R_{\rm vir}, c\right\}$ from $\left\{R_s, \rho_0, \ldots \right\}$
- [ ] Calculate $M_{\rm 500c}$ by sphere shrinking
- [ ] Calculate the cross-correlation in CSiBORG. Should see the scale of the constraints?
## Open questions :bulb:
- Get uncertainty on the fitted $R_{\rm s}$? If so get this directly from JAX.