mirror of
https://github.com/Richard-Sti/csiborgtools.git
synced 2024-12-22 16:48:01 +00:00
Edits paths (#79)
This commit is contained in:
Richard Stiskalek
GitHub
parent
61077940f3
commit
5acc4684bb
1 changed files with 67 additions and 84 deletions
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@ -21,6 +21,17 @@ from warnings import warn
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import numpy
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def check_directory(path):
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if not isdir(path):
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raise IOError(f"Invalid directory `{path}`!")
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def try_create_directory(fdir):
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if not isdir(fdir):
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makedirs(fdir)
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warn(f"Created directory `{fdir}`.")
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class Paths:
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"""
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Paths manager for CSiBORG and Quijote simulations.
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@ -48,11 +59,6 @@ class Paths:
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self.borg_dir = borg_dir
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self.quijote_dir = quijote_dir
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@staticmethod
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def _check_directory(path):
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if not isdir(path):
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raise IOError(f"Invalid directory `{path}`!")
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@property
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def srcdir(self):
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"""
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@ -70,7 +76,7 @@ class Paths:
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def srcdir(self, path):
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if path is None:
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return
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self._check_directory(path)
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check_directory(path)
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self._srcdir = path
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@property
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@ -90,7 +96,7 @@ class Paths:
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def borg_dir(self, path):
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if path is None:
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return
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self._check_directory(path)
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check_directory(path)
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self._borg_dir = path
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@property
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@ -110,7 +116,7 @@ class Paths:
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def quijote_dir(self, path):
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if path is None:
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return
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self._check_directory(path)
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check_directory(path)
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self._quijote_dir = path
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@property
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@ -130,7 +136,7 @@ class Paths:
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def postdir(self, path):
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if path is None:
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return
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self._check_directory(path)
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check_directory(path)
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self._postdir = path
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@property
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@ -143,9 +149,7 @@ class Paths:
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path : str
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"""
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fpath = join(self.postdir, "temp")
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if not isdir(fpath):
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mkdir(fpath)
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warn(f"Created directory `{fpath}`.", UserWarning, stacklevel=1)
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try_create_directory(fpath)
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return fpath
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@staticmethod
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@ -202,11 +206,9 @@ class Paths:
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"""
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assert simname in ["csiborg", "quijote"]
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if simname == "quijote":
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raise RuntimeError("Quijote FoF membership is in the FoF cats..")
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raise RuntimeError("Quijote FoF membership is in the FoF cats.")
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fdir = join(self.postdir, "FoF_membership", )
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if not isdir(fdir):
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mkdir(fdir)
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warn(f"Created directory `{fdir}`.", UserWarning, stacklevel=1)
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try_create_directory(fdir)
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fout = join(fdir, f"fof_membership_{nsim}.npy")
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if sorted:
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fout = fout.replace(".npy", "_sorted.npy")
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@ -223,14 +225,14 @@ class Paths:
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simname : str
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Simulation name. Must be one of `csiborg` or `quijote`.
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"""
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assert simname in ["csiborg", "quijote"]
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if simname == "csiborg":
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fdir = join(self.postdir, "FoF_membership", )
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if not isdir(fdir):
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mkdir(fdir)
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warn(f"Created directory `{fdir}`.", UserWarning)
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try_create_directory(fdir)
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return join(fdir, f"halo_catalog_{nsim}_FOF.txt")
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return join(self.quijote_dir, "Halos_fiducial", str(nsim))
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elif simname == "quijote":
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return join(self.quijote_dir, "Halos_fiducial", str(nsim))
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else:
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raise ValueError(f"Unknown simulation name `{simname}`.")
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def mmain(self, nsnap, nsim):
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"""
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@ -248,11 +250,9 @@ class Paths:
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path : str
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"""
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fdir = join(self.postdir, "mmain")
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if not isdir(fdir):
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mkdir(fdir)
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warn(f"Created directory `{fdir}`.", UserWarning, stacklevel=1)
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return join(fdir,
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f"mmain_{str(nsim).zfill(5)}_{str(nsnap).zfill(5)}.npz")
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try_create_directory(fdir)
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return join(
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fdir, f"mmain_{str(nsim).zfill(5)}_{str(nsnap).zfill(5)}.npz")
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def initmatch(self, nsim, simname, kind):
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"""
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@ -272,21 +272,17 @@ class Paths:
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-------
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path : str
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"""
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assert simname in ["csiborg", "quijote"]
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assert kind in ["particles", "fit"]
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ftype = "npy" if kind == "fit" else "h5"
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if simname == "csiborg":
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fdir = join(self.postdir, "initmatch")
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if not isdir(fdir):
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mkdir(fdir)
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warn(f"Created directory `{fdir}`.", UserWarning)
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return join(fdir, f"{kind}_{str(nsim).zfill(5)}.{ftype}")
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elif simname == "quijote":
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fdir = join(self.quijote_dir, "initmatch")
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else:
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raise ValueError(f"Unknown simulation name `{simname}`.")
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fdir = join(self.quijote_dir, "initmatch")
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if not isdir(fdir):
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mkdir(fdir)
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warn(f"Created directory `{fdir}`.", UserWarning)
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try_create_directory(fdir)
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return join(fdir, f"{kind}_{str(nsim).zfill(5)}.{ftype}")
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def get_ics(self, simname):
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@ -303,7 +299,6 @@ class Paths:
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-------
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ids : 1-dimensional array
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"""
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assert simname in ["csiborg", "quijote", "quijote_full"]
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if simname == "csiborg":
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files = glob(join(self.srcdir, "ramses_out*"))
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files = [f.split("/")[-1] for f in files] # Only file names
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@ -315,10 +310,13 @@ class Paths:
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ids.remove(5511)
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except ValueError:
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pass
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return numpy.sort(ids)
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elif simname == "quijote" or simname == "quijote_full":
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files = glob(
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"/mnt/extraspace/rstiskalek/Quijote/Snapshots_fiducial/*")
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files = [int(f.split("/")[-1]) for f in files]
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else:
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raise ValueError(f"Unknown simulation name `{simname}`.")
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files = glob("/mnt/extraspace/rstiskalek/Quijote/Snapshots_fiducial/*")
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files = [int(f.split("/")[-1]) for f in files]
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return numpy.sort(files)
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def snapshots(self, nsim, simname, tonew=False):
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@ -339,15 +337,16 @@ class Paths:
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-------
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path : str
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"""
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assert simname in ["csiborg", "quijote"]
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if simname == "csiborg":
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fname = "ramses_out_{}"
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if tonew:
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fname += "_new"
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return join(self.postdir, "output", fname.format(nsim))
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return join(self.srcdir, fname.format(nsim))
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return join(self.quijote_dir, "Snapshots_fiducial", str(nsim))
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elif simname == "quijote":
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return join(self.quijote_dir, "Snapshots_fiducial", str(nsim))
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else:
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raise ValueError(f"Unknown simulation name `{simname}`.")
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def get_snapshots(self, nsim, simname):
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"""
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@ -370,10 +369,12 @@ class Paths:
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snaps = glob(join(simpath, "output_*"))
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# Take just the last _00XXXX from each file and strip zeros
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snaps = [int(snap.split("_")[-1].lstrip("0")) for snap in snaps]
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else:
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elif simname == "quijote":
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snaps = glob(join(simpath, "snapdir_*"))
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snaps = [int(snap.split("/")[-1].split("snapdir_")[-1])
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for snap in snaps]
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else:
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raise ValueError(f"Unknown simulation name `{simname}`.")
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return numpy.sort(snaps)
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def snapshot(self, nsnap, nsim, simname):
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@ -418,19 +419,14 @@ class Paths:
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-------
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path : str
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"""
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assert simname in ["csiborg", "quijote"]
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if simname == "csiborg":
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fdir = join(self.postdir, "particles")
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if not isdir(fdir):
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makedirs(fdir)
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warn(f"Created directory `{fdir}`.", UserWarning)
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fname = f"parts_{str(nsim).zfill(5)}.h5"
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return join(fdir, fname)
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elif simname == "quijote":
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fdir = join(self.quijote_dir, "Particles_fiducial")
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else:
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raise ValueError(f"Unknown simulation name `{simname}`.")
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fdir = join(self.quijote_dir, "Particles_fiducial")
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if not isdir(fdir):
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makedirs(fdir)
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warn(f"Created directory `{fdir}`.", UserWarning)
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try_create_directory(fdir)
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fname = f"parts_{str(nsim).zfill(5)}.h5"
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return join(fdir, fname)
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@ -451,19 +447,13 @@ class Paths:
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-------
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path : str
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"""
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assert simname in ["csiborg", "quijote"]
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if simname == "csiborg":
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fdir = join(self.postdir, "structfit")
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if not isdir(fdir):
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mkdir(fdir)
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warn(f"Created directory `{fdir}`.", UserWarning, stacklevel=1)
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fname = f"out_{str(nsim).zfill(5)}_{str(nsnap).zfill(5)}.npy"
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return join(fdir, fname)
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elif simname == "quijote":
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fdir = join(self.quijote_dir, "structfit")
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else:
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raise ValueError(f"Unknown simulation name `{simname}`.")
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fdir = join(self.quijote_dir, "structfit")
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if not isdir(fdir):
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mkdir(fdir)
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warn(f"Created directory `{fdir}`.", UserWarning)
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fname = f"out_{str(nsim).zfill(5)}_{str(nsnap).zfill(5)}.npy"
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return join(fdir, fname)
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@ -485,9 +475,8 @@ class Paths:
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path : str
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"""
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fdir = join(self.postdir, "overlap")
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if not isdir(fdir):
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mkdir(fdir)
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warn(f"Created directory `{fdir}`.", UserWarning, stacklevel=1)
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try_create_directory(fdir)
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fname = f"overlap_{str(nsim0).zfill(5)}_{str(nsimx).zfill(5)}.npz"
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if smoothed:
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fname = fname.replace("overlap", "overlap_smoothed")
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@ -520,11 +509,11 @@ class Paths:
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fdir = join(self.postdir, "environment")
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assert kind in ["density", "velocity", "potential", "radvel",
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"environment"]
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if not isdir(fdir):
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makedirs(fdir)
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warn(f"Created directory `{fdir}`.", UserWarning, stacklevel=1)
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try_create_directory(fdir)
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if in_rsp:
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kind = kind + "_rsp"
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fname = f"{kind}_{MAS}_{str(nsim).zfill(5)}_grid{grid}.npy"
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if smooth_scale is not None and smooth_scale > 0:
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smooth_scale = float(smooth_scale)
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@ -547,9 +536,7 @@ class Paths:
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path : str
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"""
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fdir = join(self.postdir, "HMF")
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if not isdir(fdir):
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makedirs(fdir)
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warn(f"Created directory `{fdir}`.", UserWarning, stacklevel=1)
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try_create_directory(fdir)
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fname = f"halo_counts_{simname}_{str(nsim).zfill(5)}.npz"
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return join(fdir, fname)
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@ -579,9 +566,8 @@ class Paths:
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assert simname in ["csiborg", "quijote"]
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assert kind in ["dist", "bin_dist", "tot_counts"]
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fdir = join(self.postdir, "nearest_neighbour")
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if not isdir(fdir):
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makedirs(fdir)
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warn(f"Created directory `{fdir}`.", UserWarning, stacklevel=1)
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try_create_directory(fdir)
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if nsim is not None:
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if simname == "csiborg":
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nsim = str(nsim).zfill(5)
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@ -615,9 +601,8 @@ class Paths:
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"""
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assert simname in ["csiborg", "quijote"]
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fdir = join(self.postdir, "knn", "auto")
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if not isdir(fdir):
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makedirs(fdir)
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warn(f"Created directory `{fdir}`.", UserWarning, stacklevel=1)
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try_create_directory(fdir)
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if nsim is not None:
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if simname == "csiborg":
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nsim = str(nsim).zfill(5)
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@ -648,9 +633,8 @@ class Paths:
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path : str
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"""
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fdir = join(self.postdir, "knn", "cross")
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if not isdir(fdir):
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makedirs(fdir)
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warn(f"Created directory `{fdir}`.", UserWarning, stacklevel=1)
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try_create_directory(fdir)
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if nsims is not None:
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assert isinstance(nsims, (list, tuple)) and len(nsims) == 2
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nsim0 = str(nsims[0]).zfill(5)
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@ -680,9 +664,8 @@ class Paths:
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path : str
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"""
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fdir = join(self.postdir, "tpcf", "auto")
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if not isdir(fdir):
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makedirs(fdir)
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warn(f"Created directory `{fdir}`.", UserWarning, stacklevel=1)
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try_create_directory(fdir)
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if nsim is not None:
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return join(fdir, f"{simname}_tpcf{str(nsim).zfill(5)}_{run}.p")
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