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kNN-CDF secondary halo bias (#40)

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* Add seperate autoknn script & config file

* edit ics

* Edit submission script

* Add threshold values

* Edit batch sizign

* Remove print

* edit

* Rename files

* Rename

* Update nb

* edit runs

* Edit submit

* Add median threshold

* add new auto reader

* editt submit

* edit submit

* Edit submit

* Add mean prk

* Edit runs

* Remove correlation file

* Move split to clutering

* Add init

* Remove import

* Add the file

* Add correlation reading

* Edit scripts

* Add below and above median permutation for cross

* Update imports

* Move rvs_in_sphere

* Create utils

* Split

* Add import

* Add normalised marks

* Add import

* Edit readme

* Clean up submission file

* Stop tracking submit files

* Update gitignore

* Add poisson field analytical expression

* Add abstract generators

* Add generators

* Pass in the generator

* Add a check for if there are any files

* Start saving average density

* Update nb

* Update readme

* Update units

* Edit jobs

* Update submits

* Update reader

* Add random crossing

* Update crossing script

* Add crossing with random

* Update readme

* Update notebook
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Richard Stiskalek 2023-04-09 20:57:05 +01:00 • committed by GitHub
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README.md
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@ -7,12 +7,20 @@
## Project Clustering
- [ ] Add uncertainty to the kNN-CDF autocorrelation?
- [ ] Add kNN-CDF differences.
- [ ] Add reading halo catalogues at higher redshifts.
- [x] Add the joint kNN-CDF calculation.
- [x] Make kNN-CDF more memory friendly if generating many randoms.
### Longterm
- [ ] Add uncertainty to the kNN-CDF autocorrelation?
- [ ] Add reading halo catalogues at higher redshifts.
### April 9 2023 Sunday
- [x] Add normalised marks calculation.
- [x] Add normalised marks to the submission scripts.
- [x] Verify analytical formula for the kNN of a uniform field.
- [x] For the cross-correlation try making the second field randoms.
- [ ] Clean up the reader code.
- [x] Correct the crossing script.
- [ ] Get started with the 2PCF calculation.
## Project Environmental Dependence
- [ ] Add gradient and Hessian of the overdensity field.