Add CLONES support (#145)

* Add submit script

* Add support for gadget2

* Add OMP

* Lower resolution

* Update resolution again

* Add selection on galactic latitude

* Update name

* Update nb

* Update nb

* Add CLONES params

* Add import

* Add CLONES path

* Add CLONES reader

* Quick fix

* Add CLONES

* Update slice nb

* Update nb

* Update nb

* Tiny updates

* Update nb

* Add name

* Add CLONES support

* Add CF4 field

* Add CLONES

* Update script

* Update nb

* Update nb

scripts_independent/field_sph_gadget.sh

@@ -0,0 +1,39 @@
+#!/bin/bash
+nthreads=28
+memory=7
+on_login=${1}
+queue="berg"
+env="/mnt/zfsusers/rstiskalek/csiborgtools/venv_csiborg/bin/python"
+file="field_sph_gadget.py"
+
+# Guilhem says higher resolution is better
+resolution=1024
+SPH_executable="/mnt/users/rstiskalek/cosmotool/bld/sample/simple3DFilter"
+scratch_space="/mnt/extraspace/rstiskalek/dump/"
+
+snapshot_kind="gadget2"
+snapshot_path="/mnt/extraspace/rstiskalek/CLONES/s8/cf2gvpecc1pt5elmo73_sig6distribsbvoldi_RZA3Derrv2_512_500_ss8_zinit60_000"
+output_path="/mnt/extraspace/rstiskalek/CLONES/s8/cf2gvpecc1pt5elmo73_sig6distribsbvoldi_RZA3Derrv2_512_500_ss8_zinit60_000.hdf5"
+
+
+# Check if `on_login` is either 0 or 1
+# Check if on_login is not empty and is a valid integer (0 or 1)
+if [ -z "$on_login" ] || ! [[ "$on_login" =~ ^[0-1]$ ]]; then
+    echo "First argument must be either 0 or 1. Received: $on_login"
+    exit 1
+fi
+
+export OMP_NUM_THREADS={nthreads}
+export OMP_NESTED=true
+
+pythoncm="$env $file --snapshot_path $snapshot_path --output_path $output_path --resolution $resolution --scratch_space $scratch_space --SPH_executable $SPH_executable --snapshot_kind $snapshot_kind"
+if [ $on_login -eq 1 ]; then
+    echo $pythoncm
+    $pythoncm
+else
+    cm="addqueue -s -q $queue -n 1x$nthreads -m $memory $pythoncm"
+    echo "Submitting:"
+    echo $cm
+    echo
+    eval $cm
+fi