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CDF for nearest neighbour (#63)

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* Updat ebounds

* fix mistake

* add plot script

* fix which sims

* Add Poisson

* Just docs

* Hide things to __main__

* Rename paths

* Move old script

* Remove radpos

* Paths renaming

* Paths renaming

* Remove trunk stuff

* Add import

* Add nearest neighbour search

* Add Quijote fiducial indices

* Add final snapshot matching

* Add fiducial observer selection

* add boxsizes

* Add reading functions

* Little stuff

* Bring back the fiducial observer

* Add arguments

* Add quijote paths

* Add notes

* Get this running

* Add yaml

* Remove Poisson stuff

* Get the 2PCF script running

* Add not finished htings

* Remove comment

* Verbosity only on 0th rank!

* Update plotting style

* Add nearest neighbour CDF

* Save radial distance too

* Add centres

* Add basic plotting
This commit is contained in:
Richard Stiskalek 2023-05-21 22:46:28 +01:00 • committed by GitHub
parent 369438f881
commit 2185846e90
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GPG key ID: 4AEE18F83AFDEB23
34 changed files with 1254 additions and 351 deletions
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8
scripts/fit_init.py
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@ -48,7 +48,7 @@ paths = csiborgtools.read.Paths(**csiborgtools.paths_glamdring)
partreader = csiborgtools.read.ParticleReader(paths)
if args.ics is None or args.ics[0] == -1:
ics = paths.get_ics()
ics = paths.get_ics("csiborg")
else:
ics = args.ics
@ -66,9 +66,9 @@ for nsim in [ics[i] for i in jobs]:
print(f"{datetime.now()}: rank {rank} calculating simulation `{nsim}`.",
flush=True)
parts = csiborgtools.read.read_h5(paths.initmatch_path(nsim, "particles"))
parts = csiborgtools.read.read_h5(paths.initmatch(nsim, "particles"))
parts = parts['particles']
clump_map = csiborgtools.read.read_h5(paths.particles_path(nsim))
clump_map = csiborgtools.read.read_h5(paths.particles(nsim))
clump_map = clump_map["clumpmap"]
clumps_cat = csiborgtools.read.ClumpsCatalogue(nsim, paths, rawdata=True,
load_fitted=False)
@ -96,7 +96,7 @@ for nsim in [ics[i] for i in jobs]:
out = out[ismain]
# Now save it
fout = paths.initmatch_path(nsim, "fit")
fout = paths.initmatch(nsim, "fit")
print(f"{datetime.now()}: dumping fits to .. `{fout}`.",
flush=True)
with open(fout, "wb") as f: