Clean up README

README.md

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 # CSiBORG Analysis
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-##  Project Overlap
-- [x] Clean up the kNN paths in the summary.
-- [x] Clean up the 2PCF paths in the summary.
-- [x] Update the clustering scripts to work with clumps instead.
-- [x] Sort out the splitting of individual clumps.
-- [x] Update the fitting scripts to work for clumps and parent halos.
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-- [ ] When calculating the overlap now check whether the halos have any particles, but that should already be the case otherwise its initial CM will not be defined.
-- [ ] Calculated fitted quantities for clumps and parent halos and add them to the catalogues.
-- [ ] Update overlap scripts to work with summed parent halos.
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-- [ ] Calculate the overlap between all 101 IC realisations on DiRAC.
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-
-## Project Clustering
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-### Longterm
-- [ ] Add uncertainty to the kNN-CDF autocorrelation?
-- [ ] Add reading halo catalogues at higher redshifts.
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-
-### April 9 2023 Sunday
-- [x] Add normalised marks calculation.
-- [x] Add normalised marks to the submission scripts.
-- [x] Verify analytical formula for the kNN of a uniform field.
-- [x] For the cross-correlation try making the second field randoms.
-- [x] Clean up the reader code.
-- [x] Correct the crossing script.
-- [x] Get started with the 2PCF calculation.
-
-## Project Environmental Dependence
-- [ ] Add gradient and Hessian of the overdensity field.