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Particle match & file system & phase space (#11)

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* Create file system

* add doc

* add n_sim n_snap directly to paths

* Move things to a single particle reader for consistency

* add docstring

* add srdcir, dumpdir and mmain_path

* make boxunits work with paths

* switch to using paths

* add tempdumpdir

* rm dependence on old functions

* rm comment

* rm unused import

* go back to all imports

* fix import bug

* rm dependence on old functions

* modernize code!

* fix typo

* fix typo

* update fits to new data structureing

* change docs

* add julia repo

* add setup

* add install commands

* ignore install files

* add array flattening

* update dependene

* add positions reader

* update manifest and projects

* add func

* update gitignore

* pos matching progress

* move file

* rm comment

* add velocities getter

* fix bug

* fix name bug

* fix path bug

* fix args func

* add redshift calculation to catalogues

* add shortcut to set n_sim and n_snap

* if cond bug

* add the cosine similarity

* add verbosit iterator

* add docs

* update README

* update README

* update README
This commit is contained in:
Richard Stiskalek 2022-11-25 10:44:08 +00:00 • committed by GitHub
parent c748c87e45
commit 161c27d995
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22 changed files with 1443 additions and 4178 deletions
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22
JuliaCSiBORGTools/src/JuliaCSiBORGTools.jl Normal file
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# Copyright (C) 2022 Richard Stiskalek
# This program is free software; you can redistribute it and/or modify it
# under the terms of the GNU General Public License as published by the
# Free Software Foundation; either version 3 of the License, or (at your
# option) any later version.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General
# Public License for more details.
#
# You should have received a copy of the GNU General Public License along
# with this program; if not, write to the Free Software Foundation, Inc.,
# 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
module JuliaCSiBORGTools
include("./particles_match.jl")
export halo_parts
end # module JuliaCSiBORGTools

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JuliaCSiBORGTools/src/particles_match.jl Normal file
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# Copyright (C) 2022 Richard Stiskalek
# This program is free software; you can redistribute it and/or modify it
# under the terms of the GNU General Public License as published by the
# Free Software Foundation; either version 3 of the License, or (at your
# option) any later version.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General
# Public License for more details.
#
# You should have received a copy of the GNU General Public License along
# with this program; if not, write to the Free Software Foundation, Inc.,
# 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
"""
halo_parts(clumpid::Int, partids::Vector{<:Int}, clumpids::Vector{<:Int})
Return particle IDs belonging to a given clump.
# Arguments
- `clumpid::Integer`: the ID of the clump.
- `partids::Vector{<:Integer}`: vector of shape `(n_particles,)` with the particle IDs.
- `clumpids::Vector{<:Integer}`: vector of shape `(n_particles, )` with the particles' clump IDs.
"""
function halo_parts(clumpid::Integer, partids::Vector{<:Integer}, clumpids::Vector{<:Integer})
return partids[clumpids .== clumpid]
end