mirror of
https://github.com/Richard-Sti/csiborgtools.git
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Update nb
This commit is contained in:
rstiskalek
parent
8d933e7ba9
commit
097b498da6
1 changed files with 129 additions and 44 deletions
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@ -2,12 +2,12 @@
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"cells": [
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{
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"cell_type": "code",
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"execution_count": 4,
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"execution_count": 1,
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"id": "5a38ed25",
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"metadata": {
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"ExecuteTime": {
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"end_time": "2023-03-31T17:09:12.165480Z",
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"end_time": "2023-04-01T06:10:36.618752Z",
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"start_time": "2023-04-01T06:10:10.251616Z"
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"scrolled": true
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},
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@ -16,8 +16,7 @@
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"name": "stdout",
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"output_type": "stream",
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"text": [
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"The autoreload extension is already loaded. To reload it, use:\n",
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" %reload_ext autoreload\n"
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"not found\n"
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]
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}
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],
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@ -44,12 +43,12 @@
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},
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{
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"cell_type": "code",
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"execution_count": 5,
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"execution_count": 4,
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"id": "4218b673",
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"metadata": {
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"ExecuteTime": {
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"end_time": "2023-03-31T17:09:13.943312Z",
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"start_time": "2023-03-31T17:09:12.167027Z"
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"end_time": "2023-04-01T06:10:44.171672Z",
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"start_time": "2023-04-01T06:10:42.109733Z"
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}
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},
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"outputs": [],
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@ -59,12 +58,11 @@
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},
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{
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"cell_type": "code",
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"execution_count": 11,
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"execution_count": null,
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"id": "5ff7a1b6",
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"metadata": {
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"ExecuteTime": {
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"end_time": "2023-03-31T17:10:18.303240Z",
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"start_time": "2023-03-31T17:10:14.674751Z"
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"start_time": "2023-04-01T06:12:15.998Z"
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}
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},
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"outputs": [
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@ -75,36 +73,6 @@
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"\r",
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" 0%| | 0/1 [00:00<?, ?it/s]"
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]
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},
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{
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"name": "stdout",
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"output_type": "stream",
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"text": [
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"float32\n",
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"float32\n"
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]
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},
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{
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"name": "stderr",
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"output_type": "stream",
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"text": [
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"100%|██████████| 1/1 [00:03<00:00, 3.37s/it]"
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]
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},
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{
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"name": "stdout",
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"output_type": "stream",
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"text": [
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"float32\n",
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"float32\n"
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]
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},
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{
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"name": "stderr",
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"output_type": "stream",
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"text": [
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"\n"
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]
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}
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],
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"source": [
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@ -113,18 +81,135 @@
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"\n",
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"knncdf = csiborgtools.match.kNN_CDF()\n",
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"\n",
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"rs, cdfs_high = knncdf(knn, nneighbours=3, Rmax=155 / 0.705, rmin=0.05, rmax=40,\n",
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" nsamples=int(1e6), neval=int(1e4), random_state=42)"
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"rs, cdf = knncdf(knn, nneighbours=2, Rmax=155 / 0.705, rmin=0.01, rmax=100,\n",
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" nsamples=int(1e8), neval=int(1e4), random_state=42, batch_size=int(1e7))"
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]
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},
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{
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"cell_type": "code",
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"execution_count": 9,
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"id": "2b85c1c6",
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"metadata": {
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"ExecuteTime": {
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"end_time": "2023-04-01T06:11:13.560595Z",
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"start_time": "2023-04-01T06:11:12.888821Z"
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}
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},
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"outputs": [],
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"source": [
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"X = knncdf.rvs_in_sphere(nsamples=int(1e7), R=1.)"
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]
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},
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{
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"cell_type": "code",
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"execution_count": 10,
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"id": "3a80cb5b",
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"metadata": {
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"ExecuteTime": {
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"end_time": "2023-04-01T06:11:15.024753Z",
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"start_time": "2023-04-01T06:11:14.973967Z"
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}
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},
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"outputs": [
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{
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"name": "stdout",
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"output_type": "stream",
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"text": [
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"Variable Type Data/Info\n",
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"------------------------------------------------\n",
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"NearestNeighbors ABCMeta <class 'sklearn.neighbors<...>rvised.NearestNeighbors'>\n",
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"X ndarray 10000000x3: 30000000 elems, type `float32`, 120000000 bytes (114.44091796875 Mb)\n",
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"cat HaloCatalogue <csiborgtools.read.make_c<...>object at 0x7fbbc6073fa0>\n",
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"cdf ndarray 2x9999: 19998 elems, type `float32`, 79992 bytes\n",
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"csiborgtools module <module 'csiborgtools' fr<...>siborgtools/__init__.py'>\n",
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"joblib module <module 'joblib' from '/m<...>ages/joblib/__init__.py'>\n",
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"knn NearestNeighbors NearestNeighbors()\n",
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"knncdf kNN_CDF <csiborgtools.match.knn.k<...>object at 0x7fbbc68bb5b0>\n",
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"matplotlib module <module 'matplotlib' from<...>/matplotlib/__init__.py'>\n",
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"np module <module 'numpy' from '/mn<...>kages/numpy/__init__.py'>\n",
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"plt module <module 'matplotlib.pyplo<...>es/matplotlib/pyplot.py'>\n",
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"rs ndarray 9999: 9999 elems, type `float64`, 79992 bytes\n",
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"sys module <module 'sys' (built-in)>\n",
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"tqdm type <class 'tqdm.std.tqdm'>\n"
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]
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}
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],
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"source": [
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"%whos"
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]
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},
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{
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"cell_type": "code",
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"execution_count": null,
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"id": "08321431",
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"id": "8b9a8cf0",
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"metadata": {},
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"outputs": [],
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"source": []
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},
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{
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"cell_type": "code",
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"execution_count": null,
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"id": "a1825f00",
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"metadata": {
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"ExecuteTime": {
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"end_time": "2023-04-01T06:01:29.388586Z",
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"start_time": "2023-04-01T06:01:29.321025Z"
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},
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"scrolled": false
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},
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"outputs": [],
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"source": [
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"plt.figure()\n",
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"plt.plot(rs, knncdf.peaked_cdf(cdf[0, :]))\n",
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"\n",
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"plt.yscale(\"log\" )\n",
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"plt.xscale(\"log\")\n",
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"plt.show()"
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]
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},
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{
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"cell_type": "code",
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"execution_count": null,
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"id": "289549a0",
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"metadata": {
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"ExecuteTime": {
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"end_time": "2023-03-31T22:55:20.690887Z",
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"start_time": "2023-03-31T22:55:20.656550Z"
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}
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},
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"outputs": [],
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"source": [
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"mask"
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]
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},
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{
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"cell_type": "code",
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"execution_count": null,
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"id": "7a8c5202",
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"metadata": {
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"ExecuteTime": {
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"end_time": "2023-03-31T22:54:52.330633Z",
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"start_time": "2023-03-31T22:54:52.299548Z"
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}
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},
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"outputs": [],
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"source": []
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},
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{
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"cell_type": "code",
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"execution_count": null,
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"id": "46f54897",
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"metadata": {
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"ExecuteTime": {
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"end_time": "2023-03-31T22:54:25.138813Z",
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"start_time": "2023-03-31T22:54:25.105044Z"
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}
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},
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"outputs": [],
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"source": [
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"dist"
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]
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},
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{
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"cell_type": "code",
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"execution_count": null,
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