csiborgtools/.gitignore

# Python virtual environments
venv/
venv_csiborg/
venv_gpu_csiborgtools/

# Compiled Python files
*.pyc

# Jupyter Notebook checkpoints
*/.ipynb_checkpoints/

# Egg-info directories
.eggs/*
csiborgtools.egg-info/*

# Build directories
build/*
bin/*
share/*

# Scripts and their outputs
scripts/*.out
scripts_plots/*.out
scripts_independent/clear.sh

# Specific script files
*python.sh
*python3.sh

# IDE settings
.vscode/settings.json

# Miscellaneous
.bashrc
*.out

# Generated plots
plots/*

# Data files
data/*

notebooks/test.ipynb
data/BulkFlowPlot.npy
data/upglade_z_0p05_all.h5
Add TNG field (#108) * Add TNG catalogue script * Add imoprt * Add TNG box * Add import * Fix little bug * Add TNG300-1 * Add shell scripts * Organize .gitignore * Add scatter to file name * Add argument scatter * Add threshold on mass * Update nb * Add scatter argument * Add scattering of radial positions * Update nb * Update script 2024-02-07 09:11:49 +00:00			`# Python virtual environments`
			`venv/`
Dump radial profile information (#48) * add radial position path * pep8 * Add basic fit profile dumping * pep8 * pep8 * pep8 * pep8 * pep8 * pep8 * Update TODO * Fix parts is None bug * Update nb 2023-04-26 23:18:30 +00:00			`venv_csiborg/`
Add marginalization over boxes (#131) * Parallelize over simulations * Update docs * Update dependency * Update imports * Add adtitional dependencies * Update .gitignore * Update ERADME * Simplify numpyro GOF * Speed up GOF * Deepcopy samples * Update scripts * Add GPU acceleration * Select boxes * Update script * Optionally sample beta * Fix old code * Simplify code * Start saving log posterior * Start popping log_likeliood * Add imports * Add converting samples * Fix sctipt name * Add evidence with harmonic * Remove comment * Update imports * Update imports so that pylians not required * Stop requiring Pylians to be installed * Update submission scripts for loops * Update nb * Update nb * Add Manticore boxes * Add verbosity flag * Add bulk flow * Update script * Update nb * Update normalization * Update submit * Update nb 2024-06-26 09:43:26 +00:00			`venv_gpu_csiborgtools/`
Add TNG field (#108) * Add TNG catalogue script * Add imoprt * Add TNG box * Add import * Fix little bug * Add TNG300-1 * Add shell scripts * Organize .gitignore * Add scatter to file name * Add argument scatter * Add threshold on mass * Update nb * Add scatter argument * Add scattering of radial positions * Update nb * Update script 2024-02-07 09:11:49 +00:00
			`# Compiled Python files`
ignore *.pyc 2022-10-10 16:41:29 +00:00			`*.pyc`
Add TNG field (#108) * Add TNG catalogue script * Add imoprt * Add TNG box * Add import * Fix little bug * Add TNG300-1 * Add shell scripts * Organize .gitignore * Add scatter to file name * Add argument scatter * Add threshold on mass * Update nb * Add scatter argument * Add scattering of radial positions * Update nb * Update script 2024-02-07 09:11:49 +00:00
			`# Jupyter Notebook checkpoints`
ignore checkpoints 2022-10-11 12:47:26 +00:00			`*/.ipynb_checkpoints/`
Add TNG field (#108) * Add TNG catalogue script * Add imoprt * Add TNG box * Add import * Fix little bug * Add TNG300-1 * Add shell scripts * Organize .gitignore * Add scatter to file name * Add argument scatter * Add threshold on mass * Update nb * Add scatter argument * Add scattering of radial positions * Update nb * Update script 2024-02-07 09:11:49 +00:00
			`# Egg-info directories`
Particle match & file system & phase space (#11) * Create file system * add doc * add n_sim n_snap directly to paths * Move things to a single particle reader for consistency * add docstring * add srdcir, dumpdir and mmain_path * make boxunits work with paths * switch to using paths * add tempdumpdir * rm dependence on old functions * rm comment * rm unused import * go back to all imports * fix import bug * rm dependence on old functions * modernize code! * fix typo * fix typo * update fits to new data structureing * change docs * add julia repo * add setup * add install commands * ignore install files * add array flattening * update dependene * add positions reader * update manifest and projects * add func * update gitignore * pos matching progress * move file * rm comment * add velocities getter * fix bug * fix name bug * fix path bug * fix args func * add redshift calculation to catalogues * add shortcut to set n_sim and n_snap * if cond bug * add the cosine similarity * add verbosit iterator * add docs * update README * update README * update README 2022-11-25 10:44:08 +00:00			`.eggs/*`
			`csiborgtools.egg-info/*`
Add TNG field (#108) * Add TNG catalogue script * Add imoprt * Add TNG box * Add import * Fix little bug * Add TNG300-1 * Add shell scripts * Organize .gitignore * Add scatter to file name * Add argument scatter * Add threshold on mass * Update nb * Add scatter argument * Add scattering of radial positions * Update nb * Update script 2024-02-07 09:11:49 +00:00
			`# Build directories`
			`build/*`
			`bin/*`
			`share/*`

			`# Scripts and their outputs`
			`scripts/*.out`
Quijote kNN adding (#62) * Fix small bug * Add fiducial observers * Rename 1D knn * Add new bounds system * rm whitespace * Add boudns * Add simname to paths * Add fiducial obserevrs * apply bounds only if not none * Add TODO * add simnames * update script * Fix distance bug * update yaml * Update file reading * Update gitignore * Add plots * add check if empty list * add func to obtaining cross * Update nb * Remove blank lines * update ignroes * loop over a few ics * update gitignore * add comments 2023-05-15 22:30:10 +00:00			`scripts_plots/*.out`
Add TNG field (#108) * Add TNG catalogue script * Add imoprt * Add TNG box * Add import * Fix little bug * Add TNG300-1 * Add shell scripts * Organize .gitignore * Add scatter to file name * Add argument scatter * Add threshold on mass * Update nb * Add scatter argument * Add scattering of radial positions * Update nb * Update script 2024-02-07 09:11:49 +00:00			`scripts_independent/clear.sh`

			`# Specific script files`
			`*python.sh`
			`*python3.sh`

			`# IDE settings`
			`.vscode/settings.json`
Add density field plot and start preparing CSiBORG2 (#94) * Add RAMSES2HDF5 conversion * Upload changes * Clean up * More clean up * updates * Little change * pep9 * Add basic SPH calculation for a snapshot * Add submit script * Remove echo * Little changes * Send off changes * Little formatting * Little updates * Add nthreads argument * Upload chagnes * Add nthreads arguemnts * Some local changes.. * Update scripts * Add submission script * Update script * Update params * Rename CSiBORGBox to CSiBORG1box * Rename CSiBORG1 reader * Move files * Rename folder again * Add basic plotting here * Add new skeletons * Move def * Update nbs * Edit directories * Rename files * Add units to converted snapshots * Fix empty dataset bug * Delete file * Edits to submission scripts * Edit paths * Update .gitignore * Fix attrs * Update weighting * Fix RA/dec bug * Add FORNAX cluster * Little edit * Remove boxes since will no longer need * Move func back * Edit to include sort by membership * Edit paths * Purge basic things * Start removing * Bring file back * Scratch * Update the rest * Improve the entire file * Remove old things * Remove old * Delete old things * Fully updates * Rename file * Edit submit script * Little things * Add print statement * Add here cols_to_structured * Edit halo cat * Remove old import * Add comment * Update paths manager * Move file * Remove file * Add chains 2023-12-13 16:08:25 +00:00
Add TNG field (#108) * Add TNG catalogue script * Add imoprt * Add TNG box * Add import * Fix little bug * Add TNG300-1 * Add shell scripts * Organize .gitignore * Add scatter to file name * Add argument scatter * Add threshold on mass * Update nb * Add scatter argument * Add scattering of radial positions * Update nb * Update script 2024-02-07 09:11:49 +00:00			`# Miscellaneous`
			`.bashrc`
Add density field plot and start preparing CSiBORG2 (#94) * Add RAMSES2HDF5 conversion * Upload changes * Clean up * More clean up * updates * Little change * pep9 * Add basic SPH calculation for a snapshot * Add submit script * Remove echo * Little changes * Send off changes * Little formatting * Little updates * Add nthreads argument * Upload chagnes * Add nthreads arguemnts * Some local changes.. * Update scripts * Add submission script * Update script * Update params * Rename CSiBORGBox to CSiBORG1box * Rename CSiBORG1 reader * Move files * Rename folder again * Add basic plotting here * Add new skeletons * Move def * Update nbs * Edit directories * Rename files * Add units to converted snapshots * Fix empty dataset bug * Delete file * Edits to submission scripts * Edit paths * Update .gitignore * Fix attrs * Update weighting * Fix RA/dec bug * Add FORNAX cluster * Little edit * Remove boxes since will no longer need * Move func back * Edit to include sort by membership * Edit paths * Purge basic things * Start removing * Bring file back * Scratch * Update the rest * Improve the entire file * Remove old things * Remove old * Delete old things * Fully updates * Rename file * Edit submit script * Little things * Add print statement * Add here cols_to_structured * Edit halo cat * Remove old import * Add comment * Update paths manager * Move file * Remove file * Add chains 2023-12-13 16:08:25 +00:00			`*.out`
Add TNG field (#108) * Add TNG catalogue script * Add imoprt * Add TNG box * Add import * Fix little bug * Add TNG300-1 * Add shell scripts * Organize .gitignore * Add scatter to file name * Add argument scatter * Add threshold on mass * Update nb * Add scatter argument * Add scattering of radial positions * Update nb * Update script 2024-02-07 09:11:49 +00:00
			`# Generated plots`
			`plots/*`

Calculate upglade redshifts (#128) * Update redshift reading * Add helio to CMB redshift * Update imports * Update nb * Run for Quijote * Add script * Update * Update .gitignore * Update imports * Add Peery estimator * Add bulk flow scripts * Update typs * Add comment * Add blank space * Update submission script * Update description * Add barriers * Update nb * Update nb * Rename script * Move to old * Update imports * Add nb * Update script * Fix catalogue key * Update script * Update submit * Update comment * Update .gitignore * Update nb * Update for stationary obsrevers * Update submission * Add nb * Add better verbose control * Update nb * Update submit * Update nb * Add SN errors * Add draft of the script * Update verbosity flags * Add submission script * Debug script * Quickfix * Remove comment * Update nb * Update submission * Update nb * Processed UPGLADE 2024-06-20 13:33:00 +00:00			`# Data files`
			`data/*`

Observer velocity script (#120) * Rename script * Delete scripts * Add script * Edit script * Add script * Update nb * Update plotting * Update .gitignore * Update nb * Update nb * Add option to keep beta fixed 2024-03-26 09:42:53 +00:00			`notebooks/test.ipynb`
Calculate upglade redshifts (#128) * Update redshift reading * Add helio to CMB redshift * Update imports * Update nb * Run for Quijote * Add script * Update * Update .gitignore * Update imports * Add Peery estimator * Add bulk flow scripts * Update typs * Add comment * Add blank space * Update submission script * Update description * Add barriers * Update nb * Update nb * Rename script * Move to old * Update imports * Add nb * Update script * Fix catalogue key * Update script * Update submit * Update comment * Update .gitignore * Update nb * Update for stationary obsrevers * Update submission * Add nb * Add better verbose control * Update nb * Update submit * Update nb * Add SN errors * Add draft of the script * Update verbosity flags * Add submission script * Debug script * Quickfix * Remove comment * Update nb * Update submission * Update nb * Processed UPGLADE 2024-06-20 13:33:00 +00:00			`data/BulkFlowPlot.npy`
			`data/upglade_z_0p05_all.h5`