{
 "cells": [
  {
   "cell_type": "code",
   "execution_count": 9,
   "id": "5a38ed25",
   "metadata": {
    "ExecuteTime": {
     "end_time": "2023-01-20T10:53:21.933278Z",
     "start_time": "2023-01-20T10:53:21.317868Z"
    }
   },
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "The autoreload extension is already loaded. To reload it, use:\n",
      "  %reload_ext autoreload\n"
     ]
    }
   ],
   "source": [
    "import numpy as np\n",
    "%matplotlib notebook\n",
    "import matplotlib.pyplot as plt\n",
    "from os.path import exists\n",
    "try:\n",
    "    import csiborgtools\n",
    "except ModuleNotFoundError:\n",
    "    print(\"not found\")\n",
    "    import sys\n",
    "    sys.path.append(\"../\")\n",
    "    import csiborgtools\n",
    "import utils\n",
    "import joblib\n",
    "%load_ext autoreload\n",
    "%autoreload 2\n",
    "\n",
    "import cosmology_library as CL"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 47,
   "id": "b3d4d7e1",
   "metadata": {
    "ExecuteTime": {
     "end_time": "2023-01-20T13:37:51.499674Z",
     "start_time": "2023-01-20T13:37:51.463977Z"
    }
   },
   "outputs": [],
   "source": [
    "paths = csiborgtools.read.Paths()\n",
    "hw = 0.05\n",
    "darkskyps = np.genfromtxt(\"../plots/darksky.csv\", delimiter=\", \")\n",
    "\n",
    "m = np.argsort(darkskyps[:, 0])\n",
    "darkskyps[...] = darkskyps[m, ...]\n",
    "darkskyps = 10**darkskyps\n",
    "\n",
    "borg = np.genfromtxt(\"../plots/BORG_PS_Fig8.csv\", delimiter=\", \")\n",
    "m = np.argsort(borg[:, 0])\n",
    "borg[...] = borg[m, ...]\n",
    "borg = 10**borg"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 48,
   "id": "c1a4f7d8",
   "metadata": {
    "ExecuteTime": {
     "end_time": "2023-01-20T13:39:13.679431Z",
     "start_time": "2023-01-20T13:37:52.908174Z"
    }
   },
   "outputs": [],
   "source": [
    "pkreader = csiborgtools.summary.PKReader(paths.get_ics, hw)\n",
    "\n",
    "autoks, pks = pkreader.read_autos()\n",
    "\n",
    "# crossks, xpks = pkreader.read_cross()"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 25,
   "id": "f499315a",
   "metadata": {
    "ExecuteTime": {
     "end_time": "2023-01-20T12:36:22.132763Z",
     "start_time": "2023-01-20T12:36:21.552200Z"
    }
   },
   "outputs": [],
   "source": [
    "np.save(\"../plots/ks_{}.npy\".format(hw), autoks)\n",
    "np.save(\"../plots/pks_{}.npy\".format(hw), pks)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 51,
   "id": "39e11e4f",
   "metadata": {
    "ExecuteTime": {
     "end_time": "2023-01-20T13:40:10.455695Z",
     "start_time": "2023-01-20T13:39:54.902804Z"
    }
   },
   "outputs": [
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "WARNING:root:get_matter_power_spectrum using larger k_max than input parameter Transfer.kmax\n"
     ]
    }
   ],
   "source": [
    "import camb\n",
    "from camb import model, initialpower\n",
    "\n",
    "#Now get matter power spectra and sigma8 at redshift 0 and 0.8\n",
    "pars = camb.CAMBparams()\n",
    "h = 0.705\n",
    "pars.set_cosmology(H0=h*100, ombh2=0.0486 * h**2, omch2=(0.307 - 0.04825) * h**2)\n",
    "pars.InitPower.set_params(ns=0.9611)\n",
    "#Note non-linear corrections couples to smaller scales than you want\n",
    "pars.set_matter_power(redshifts=[0.], kmax=40)\n",
    "\n",
    "#Non-Linear spectra (Halofit)\n",
    "pars.NonLinear = model.NonLinear_both\n",
    "results = camb.get_results(pars)\n",
    "results.calc_power_spectra(pars)\n",
    "kh_nonlin, z_nonlin, pk_nonlin = results.get_matter_power_spectrum(minkh=autoks.min(), maxkh=autoks.max(), npoints = 200)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 52,
   "id": "3d3a5c09",
   "metadata": {
    "ExecuteTime": {
     "end_time": "2023-01-20T13:40:17.053837Z",
     "start_time": "2023-01-20T13:40:14.671115Z"
    }
   },
   "outputs": [
    {
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       "window.mpl = {};\n",
       "\n",
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       "    if (typeof WebSocket !== 'undefined') {\n",
       "        return WebSocket;\n",
       "    } else if (typeof MozWebSocket !== 'undefined') {\n",
       "        return MozWebSocket;\n",
       "    } else {\n",
       "        alert(\n",
       "            'Your browser does not have WebSocket support. ' +\n",
       "                'Please try Chrome, Safari or Firefox ≥ 6. ' +\n",
       "                'Firefox 4 and 5 are also supported but you ' +\n",
       "                'have to enable WebSockets in about:config.'\n",
       "        );\n",
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       "        if (warnings) {\n",
       "            warnings.style.display = 'block';\n",
       "            warnings.textContent =\n",
       "                'This browser does not support binary websocket messages. ' +\n",
       "                'Performance may be slow.';\n",
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       "    titlebar.classList =\n",
       "        'ui-dialog-titlebar ui-widget-header ui-corner-all ui-helper-clearfix';\n",
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       "    this.root.appendChild(titlebar);\n",
       "    this.header = titletext;\n",
       "};\n",
       "\n",
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       "\n",
       "mpl.figure.prototype._root_extra_style = function (_canvas_div) {};\n",
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       "mpl.figure.prototype._init_canvas = function () {\n",
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       "    canvas_div.setAttribute(\n",
       "        'style',\n",
       "        'border: 1px solid #ddd;' +\n",
       "            'box-sizing: content-box;' +\n",
       "            'clear: both;' +\n",
       "            'min-height: 1px;' +\n",
       "            'min-width: 1px;' +\n",
       "            'outline: 0;' +\n",
       "            'overflow: hidden;' +\n",
       "            'position: relative;' +\n",
       "            'resize: both;'\n",
       "    );\n",
       "\n",
       "    function on_keyboard_event_closure(name) {\n",
       "        return function (event) {\n",
       "            return fig.key_event(event, name);\n",
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       "\n",
       "    canvas_div.addEventListener(\n",
       "        'keydown',\n",
       "        on_keyboard_event_closure('key_press')\n",
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       "        'keyup',\n",
       "        on_keyboard_event_closure('key_release')\n",
       "    );\n",
       "\n",
       "    this._canvas_extra_style(canvas_div);\n",
       "    this.root.appendChild(canvas_div);\n",
       "\n",
       "    var canvas = (this.canvas = document.createElement('canvas'));\n",
       "    canvas.classList.add('mpl-canvas');\n",
       "    canvas.setAttribute('style', 'box-sizing: content-box;');\n",
       "\n",
       "    this.context = canvas.getContext('2d');\n",
       "\n",
       "    var backingStore =\n",
       "        this.context.backingStorePixelRatio ||\n",
       "        this.context.webkitBackingStorePixelRatio ||\n",
       "        this.context.mozBackingStorePixelRatio ||\n",
       "        this.context.msBackingStorePixelRatio ||\n",
       "        this.context.oBackingStorePixelRatio ||\n",
       "        this.context.backingStorePixelRatio ||\n",
       "        1;\n",
       "\n",
       "    this.ratio = (window.devicePixelRatio || 1) / backingStore;\n",
       "\n",
       "    var rubberband_canvas = (this.rubberband_canvas = document.createElement(\n",
       "        'canvas'\n",
       "    ));\n",
       "    rubberband_canvas.setAttribute(\n",
       "        'style',\n",
       "        'box-sizing: content-box; position: absolute; left: 0; top: 0; z-index: 1;'\n",
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       "\n",
       "    // Apply a ponyfill if ResizeObserver is not implemented by browser.\n",
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       "                'width: ' + width + 'px; height: ' + height + 'px;'\n",
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       "            rubberband_canvas.setAttribute('height', height);\n",
       "\n",
       "            // And update the size in Python. We ignore the initial 0/0 size\n",
       "            // that occurs as the element is placed into the DOM, which should\n",
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       "\n",
       "    canvas_div.appendChild(canvas);\n",
       "    canvas_div.appendChild(rubberband_canvas);\n",
       "\n",
       "    this.rubberband_context = rubberband_canvas.getContext('2d');\n",
       "    this.rubberband_context.strokeStyle = '#000000';\n",
       "\n",
       "    this._resize_canvas = function (width, height, forward) {\n",
       "        if (forward) {\n",
       "            canvas_div.style.width = width + 'px';\n",
       "            canvas_div.style.height = height + 'px';\n",
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       "\n",
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       "        canvas_div.focus();\n",
       "    }\n",
       "\n",
       "    window.setTimeout(set_focus, 100);\n",
       "};\n",
       "\n",
       "mpl.figure.prototype._init_toolbar = function () {\n",
       "    var fig = this;\n",
       "\n",
       "    var toolbar = document.createElement('div');\n",
       "    toolbar.classList = 'mpl-toolbar';\n",
       "    this.root.appendChild(toolbar);\n",
       "\n",
       "    function on_click_closure(name) {\n",
       "        return function (_event) {\n",
       "            return fig.toolbar_button_onclick(name);\n",
       "        };\n",
       "    }\n",
       "\n",
       "    function on_mouseover_closure(tooltip) {\n",
       "        return function (event) {\n",
       "            if (!event.currentTarget.disabled) {\n",
       "                return fig.toolbar_button_onmouseover(tooltip);\n",
       "            }\n",
       "        };\n",
       "    }\n",
       "\n",
       "    fig.buttons = {};\n",
       "    var buttonGroup = document.createElement('div');\n",
       "    buttonGroup.classList = 'mpl-button-group';\n",
       "    for (var toolbar_ind in mpl.toolbar_items) {\n",
       "        var name = mpl.toolbar_items[toolbar_ind][0];\n",
       "        var tooltip = mpl.toolbar_items[toolbar_ind][1];\n",
       "        var image = mpl.toolbar_items[toolbar_ind][2];\n",
       "        var method_name = mpl.toolbar_items[toolbar_ind][3];\n",
       "\n",
       "        if (!name) {\n",
       "            /* Instead of a spacer, we start a new button group. */\n",
       "            if (buttonGroup.hasChildNodes()) {\n",
       "                toolbar.appendChild(buttonGroup);\n",
       "            }\n",
       "            buttonGroup = document.createElement('div');\n",
       "            buttonGroup.classList = 'mpl-button-group';\n",
       "            continue;\n",
       "        }\n",
       "\n",
       "        var button = (fig.buttons[name] = document.createElement('button'));\n",
       "        button.classList = 'mpl-widget';\n",
       "        button.setAttribute('role', 'button');\n",
       "        button.setAttribute('aria-disabled', 'false');\n",
       "        button.addEventListener('click', on_click_closure(method_name));\n",
       "        button.addEventListener('mouseover', on_mouseover_closure(tooltip));\n",
       "\n",
       "        var icon_img = document.createElement('img');\n",
       "        icon_img.src = '_images/' + image + '.png';\n",
       "        icon_img.srcset = '_images/' + image + '_large.png 2x';\n",
       "        icon_img.alt = tooltip;\n",
       "        button.appendChild(icon_img);\n",
       "\n",
       "        buttonGroup.appendChild(button);\n",
       "    }\n",
       "\n",
       "    if (buttonGroup.hasChildNodes()) {\n",
       "        toolbar.appendChild(buttonGroup);\n",
       "    }\n",
       "\n",
       "    var fmt_picker = document.createElement('select');\n",
       "    fmt_picker.classList = 'mpl-widget';\n",
       "    toolbar.appendChild(fmt_picker);\n",
       "    this.format_dropdown = fmt_picker;\n",
       "\n",
       "    for (var ind in mpl.extensions) {\n",
       "        var fmt = mpl.extensions[ind];\n",
       "        var option = document.createElement('option');\n",
       "        option.selected = fmt === mpl.default_extension;\n",
       "        option.innerHTML = fmt;\n",
       "        fmt_picker.appendChild(option);\n",
       "    }\n",
       "\n",
       "    var status_bar = document.createElement('span');\n",
       "    status_bar.classList = 'mpl-message';\n",
       "    toolbar.appendChild(status_bar);\n",
       "    this.message = status_bar;\n",
       "};\n",
       "\n",
       "mpl.figure.prototype.request_resize = function (x_pixels, y_pixels) {\n",
       "    // Request matplotlib to resize the figure. Matplotlib will then trigger a resize in the client,\n",
       "    // which will in turn request a refresh of the image.\n",
       "    this.send_message('resize', { width: x_pixels, height: y_pixels });\n",
       "};\n",
       "\n",
       "mpl.figure.prototype.send_message = function (type, properties) {\n",
       "    properties['type'] = type;\n",
       "    properties['figure_id'] = this.id;\n",
       "    this.ws.send(JSON.stringify(properties));\n",
       "};\n",
       "\n",
       "mpl.figure.prototype.send_draw_message = function () {\n",
       "    if (!this.waiting) {\n",
       "        this.waiting = true;\n",
       "        this.ws.send(JSON.stringify({ type: 'draw', figure_id: this.id }));\n",
       "    }\n",
       "};\n",
       "\n",
       "mpl.figure.prototype.handle_save = function (fig, _msg) {\n",
       "    var format_dropdown = fig.format_dropdown;\n",
       "    var format = format_dropdown.options[format_dropdown.selectedIndex].value;\n",
       "    fig.ondownload(fig, format);\n",
       "};\n",
       "\n",
       "mpl.figure.prototype.handle_resize = function (fig, msg) {\n",
       "    var size = msg['size'];\n",
       "    if (size[0] !== fig.canvas.width || size[1] !== fig.canvas.height) {\n",
       "        fig._resize_canvas(size[0], size[1], msg['forward']);\n",
       "        fig.send_message('refresh', {});\n",
       "    }\n",
       "};\n",
       "\n",
       "mpl.figure.prototype.handle_rubberband = function (fig, msg) {\n",
       "    var x0 = msg['x0'] / fig.ratio;\n",
       "    var y0 = (fig.canvas.height - msg['y0']) / fig.ratio;\n",
       "    var x1 = msg['x1'] / fig.ratio;\n",
       "    var y1 = (fig.canvas.height - msg['y1']) / fig.ratio;\n",
       "    x0 = Math.floor(x0) + 0.5;\n",
       "    y0 = Math.floor(y0) + 0.5;\n",
       "    x1 = Math.floor(x1) + 0.5;\n",
       "    y1 = Math.floor(y1) + 0.5;\n",
       "    var min_x = Math.min(x0, x1);\n",
       "    var min_y = Math.min(y0, y1);\n",
       "    var width = Math.abs(x1 - x0);\n",
       "    var height = Math.abs(y1 - y0);\n",
       "\n",
       "    fig.rubberband_context.clearRect(\n",
       "        0,\n",
       "        0,\n",
       "        fig.canvas.width / fig.ratio,\n",
       "        fig.canvas.height / fig.ratio\n",
       "    );\n",
       "\n",
       "    fig.rubberband_context.strokeRect(min_x, min_y, width, height);\n",
       "};\n",
       "\n",
       "mpl.figure.prototype.handle_figure_label = function (fig, msg) {\n",
       "    // Updates the figure title.\n",
       "    fig.header.textContent = msg['label'];\n",
       "};\n",
       "\n",
       "mpl.figure.prototype.handle_cursor = function (fig, msg) {\n",
       "    fig.rubberband_canvas.style.cursor = msg['cursor'];\n",
       "};\n",
       "\n",
       "mpl.figure.prototype.handle_message = function (fig, msg) {\n",
       "    fig.message.textContent = msg['message'];\n",
       "};\n",
       "\n",
       "mpl.figure.prototype.handle_draw = function (fig, _msg) {\n",
       "    // Request the server to send over a new figure.\n",
       "    fig.send_draw_message();\n",
       "};\n",
       "\n",
       "mpl.figure.prototype.handle_image_mode = function (fig, msg) {\n",
       "    fig.image_mode = msg['mode'];\n",
       "};\n",
       "\n",
       "mpl.figure.prototype.handle_history_buttons = function (fig, msg) {\n",
       "    for (var key in msg) {\n",
       "        if (!(key in fig.buttons)) {\n",
       "            continue;\n",
       "        }\n",
       "        fig.buttons[key].disabled = !msg[key];\n",
       "        fig.buttons[key].setAttribute('aria-disabled', !msg[key]);\n",
       "    }\n",
       "};\n",
       "\n",
       "mpl.figure.prototype.handle_navigate_mode = function (fig, msg) {\n",
       "    if (msg['mode'] === 'PAN') {\n",
       "        fig.buttons['Pan'].classList.add('active');\n",
       "        fig.buttons['Zoom'].classList.remove('active');\n",
       "    } else if (msg['mode'] === 'ZOOM') {\n",
       "        fig.buttons['Pan'].classList.remove('active');\n",
       "        fig.buttons['Zoom'].classList.add('active');\n",
       "    } else {\n",
       "        fig.buttons['Pan'].classList.remove('active');\n",
       "        fig.buttons['Zoom'].classList.remove('active');\n",
       "    }\n",
       "};\n",
       "\n",
       "mpl.figure.prototype.updated_canvas_event = function () {\n",
       "    // Called whenever the canvas gets updated.\n",
       "    this.send_message('ack', {});\n",
       "};\n",
       "\n",
       "// A function to construct a web socket function for onmessage handling.\n",
       "// Called in the figure constructor.\n",
       "mpl.figure.prototype._make_on_message_function = function (fig) {\n",
       "    return function socket_on_message(evt) {\n",
       "        if (evt.data instanceof Blob) {\n",
       "            var img = evt.data;\n",
       "            if (img.type !== 'image/png') {\n",
       "                /* FIXME: We get \"Resource interpreted as Image but\n",
       "                 * transferred with MIME type text/plain:\" errors on\n",
       "                 * Chrome.  But how to set the MIME type?  It doesn't seem\n",
       "                 * to be part of the websocket stream */\n",
       "                img.type = 'image/png';\n",
       "            }\n",
       "\n",
       "            /* Free the memory for the previous frames */\n",
       "            if (fig.imageObj.src) {\n",
       "                (window.URL || window.webkitURL).revokeObjectURL(\n",
       "                    fig.imageObj.src\n",
       "                );\n",
       "            }\n",
       "\n",
       "            fig.imageObj.src = (window.URL || window.webkitURL).createObjectURL(\n",
       "                img\n",
       "            );\n",
       "            fig.updated_canvas_event();\n",
       "            fig.waiting = false;\n",
       "            return;\n",
       "        } else if (\n",
       "            typeof evt.data === 'string' &&\n",
       "            evt.data.slice(0, 21) === 'data:image/png;base64'\n",
       "        ) {\n",
       "            fig.imageObj.src = evt.data;\n",
       "            fig.updated_canvas_event();\n",
       "            fig.waiting = false;\n",
       "            return;\n",
       "        }\n",
       "\n",
       "        var msg = JSON.parse(evt.data);\n",
       "        var msg_type = msg['type'];\n",
       "\n",
       "        // Call the  \"handle_{type}\" callback, which takes\n",
       "        // the figure and JSON message as its only arguments.\n",
       "        try {\n",
       "            var callback = fig['handle_' + msg_type];\n",
       "        } catch (e) {\n",
       "            console.log(\n",
       "                \"No handler for the '\" + msg_type + \"' message type: \",\n",
       "                msg\n",
       "            );\n",
       "            return;\n",
       "        }\n",
       "\n",
       "        if (callback) {\n",
       "            try {\n",
       "                // console.log(\"Handling '\" + msg_type + \"' message: \", msg);\n",
       "                callback(fig, msg);\n",
       "            } catch (e) {\n",
       "                console.log(\n",
       "                    \"Exception inside the 'handler_\" + msg_type + \"' callback:\",\n",
       "                    e,\n",
       "                    e.stack,\n",
       "                    msg\n",
       "                );\n",
       "            }\n",
       "        }\n",
       "    };\n",
       "};\n",
       "\n",
       "// from https://stackoverflow.com/questions/1114465/getting-mouse-location-in-canvas\n",
       "mpl.findpos = function (e) {\n",
       "    //this section is from http://www.quirksmode.org/js/events_properties.html\n",
       "    var targ;\n",
       "    if (!e) {\n",
       "        e = window.event;\n",
       "    }\n",
       "    if (e.target) {\n",
       "        targ = e.target;\n",
       "    } else if (e.srcElement) {\n",
       "        targ = e.srcElement;\n",
       "    }\n",
       "    if (targ.nodeType === 3) {\n",
       "        // defeat Safari bug\n",
       "        targ = targ.parentNode;\n",
       "    }\n",
       "\n",
       "    // pageX,Y are the mouse positions relative to the document\n",
       "    var boundingRect = targ.getBoundingClientRect();\n",
       "    var x = e.pageX - (boundingRect.left + document.body.scrollLeft);\n",
       "    var y = e.pageY - (boundingRect.top + document.body.scrollTop);\n",
       "\n",
       "    return { x: x, y: y };\n",
       "};\n",
       "\n",
       "/*\n",
       " * return a copy of an object with only non-object keys\n",
       " * we need this to avoid circular references\n",
       " * https://stackoverflow.com/a/24161582/3208463\n",
       " */\n",
       "function simpleKeys(original) {\n",
       "    return Object.keys(original).reduce(function (obj, key) {\n",
       "        if (typeof original[key] !== 'object') {\n",
       "            obj[key] = original[key];\n",
       "        }\n",
       "        return obj;\n",
       "    }, {});\n",
       "}\n",
       "\n",
       "mpl.figure.prototype.mouse_event = function (event, name) {\n",
       "    var canvas_pos = mpl.findpos(event);\n",
       "\n",
       "    if (name === 'button_press') {\n",
       "        this.canvas.focus();\n",
       "        this.canvas_div.focus();\n",
       "    }\n",
       "\n",
       "    var x = canvas_pos.x * this.ratio;\n",
       "    var y = canvas_pos.y * this.ratio;\n",
       "\n",
       "    this.send_message(name, {\n",
       "        x: x,\n",
       "        y: y,\n",
       "        button: event.button,\n",
       "        step: event.step,\n",
       "        guiEvent: simpleKeys(event),\n",
       "    });\n",
       "\n",
       "    /* This prevents the web browser from automatically changing to\n",
       "     * the text insertion cursor when the button is pressed.  We want\n",
       "     * to control all of the cursor setting manually through the\n",
       "     * 'cursor' event from matplotlib */\n",
       "    event.preventDefault();\n",
       "    return false;\n",
       "};\n",
       "\n",
       "mpl.figure.prototype._key_event_extra = function (_event, _name) {\n",
       "    // Handle any extra behaviour associated with a key event\n",
       "};\n",
       "\n",
       "mpl.figure.prototype.key_event = function (event, name) {\n",
       "    // Prevent repeat events\n",
       "    if (name === 'key_press') {\n",
       "        if (event.key === this._key) {\n",
       "            return;\n",
       "        } else {\n",
       "            this._key = event.key;\n",
       "        }\n",
       "    }\n",
       "    if (name === 'key_release') {\n",
       "        this._key = null;\n",
       "    }\n",
       "\n",
       "    var value = '';\n",
       "    if (event.ctrlKey && event.key !== 'Control') {\n",
       "        value += 'ctrl+';\n",
       "    }\n",
       "    else if (event.altKey && event.key !== 'Alt') {\n",
       "        value += 'alt+';\n",
       "    }\n",
       "    else if (event.shiftKey && event.key !== 'Shift') {\n",
       "        value += 'shift+';\n",
       "    }\n",
       "\n",
       "    value += 'k' + event.key;\n",
       "\n",
       "    this._key_event_extra(event, name);\n",
       "\n",
       "    this.send_message(name, { key: value, guiEvent: simpleKeys(event) });\n",
       "    return false;\n",
       "};\n",
       "\n",
       "mpl.figure.prototype.toolbar_button_onclick = function (name) {\n",
       "    if (name === 'download') {\n",
       "        this.handle_save(this, null);\n",
       "    } else {\n",
       "        this.send_message('toolbar_button', { name: name });\n",
       "    }\n",
       "};\n",
       "\n",
       "mpl.figure.prototype.toolbar_button_onmouseover = function (tooltip) {\n",
       "    this.message.textContent = tooltip;\n",
       "};\n",
       "\n",
       "///////////////// REMAINING CONTENT GENERATED BY embed_js.py /////////////////\n",
       "// prettier-ignore\n",
       "var _JSXTOOLS_RESIZE_OBSERVER=function(A){var t,i=new WeakMap,n=new WeakMap,a=new WeakMap,r=new WeakMap,o=new Set;function s(e){if(!(this instanceof s))throw new TypeError(\"Constructor requires 'new' operator\");i.set(this,e)}function h(){throw new TypeError(\"Function is not a constructor\")}function c(e,t,i,n){e=0 in arguments?Number(arguments[0]):0,t=1 in arguments?Number(arguments[1]):0,i=2 in arguments?Number(arguments[2]):0,n=3 in arguments?Number(arguments[3]):0,this.right=(this.x=this.left=e)+(this.width=i),this.bottom=(this.y=this.top=t)+(this.height=n),Object.freeze(this)}function d(){t=requestAnimationFrame(d);var s=new WeakMap,p=new Set;o.forEach((function(t){r.get(t).forEach((function(i){var r=t instanceof window.SVGElement,o=a.get(t),d=r?0:parseFloat(o.paddingTop),f=r?0:parseFloat(o.paddingRight),l=r?0:parseFloat(o.paddingBottom),u=r?0:parseFloat(o.paddingLeft),g=r?0:parseFloat(o.borderTopWidth),m=r?0:parseFloat(o.borderRightWidth),w=r?0:parseFloat(o.borderBottomWidth),b=u+f,F=d+l,v=(r?0:parseFloat(o.borderLeftWidth))+m,W=g+w,y=r?0:t.offsetHeight-W-t.clientHeight,E=r?0:t.offsetWidth-v-t.clientWidth,R=b+v,z=F+W,M=r?t.width:parseFloat(o.width)-R-E,O=r?t.height:parseFloat(o.height)-z-y;if(n.has(t)){var k=n.get(t);if(k[0]===M&&k[1]===O)return}n.set(t,[M,O]);var S=Object.create(h.prototype);S.target=t,S.contentRect=new c(u,d,M,O),s.has(i)||(s.set(i,[]),p.add(i)),s.get(i).push(S)}))})),p.forEach((function(e){i.get(e).call(e,s.get(e),e)}))}return s.prototype.observe=function(i){if(i instanceof window.Element){r.has(i)||(r.set(i,new Set),o.add(i),a.set(i,window.getComputedStyle(i)));var n=r.get(i);n.has(this)||n.add(this),cancelAnimationFrame(t),t=requestAnimationFrame(d)}},s.prototype.unobserve=function(i){if(i instanceof window.Element&&r.has(i)){var n=r.get(i);n.has(this)&&(n.delete(this),n.size||(r.delete(i),o.delete(i))),n.size||r.delete(i),o.size||cancelAnimationFrame(t)}},A.DOMRectReadOnly=c,A.ResizeObserver=s,A.ResizeObserverEntry=h,A}; // eslint-disable-line\n",
       "mpl.toolbar_items = [[\"Home\", \"Reset original view\", \"fa fa-home\", \"home\"], [\"Back\", \"Back to previous view\", \"fa fa-arrow-left\", \"back\"], [\"Forward\", \"Forward to next view\", \"fa fa-arrow-right\", \"forward\"], [\"\", \"\", \"\", \"\"], [\"Pan\", \"Left button pans, Right button zooms\\nx/y fixes axis, CTRL fixes aspect\", \"fa fa-arrows\", \"pan\"], [\"Zoom\", \"Zoom to rectangle\\nx/y fixes axis\", \"fa fa-square-o\", \"zoom\"], [\"\", \"\", \"\", \"\"], [\"Download\", \"Download plot\", \"fa fa-floppy-o\", \"download\"]];\n",
       "\n",
       "mpl.extensions = [\"eps\", \"jpeg\", \"pgf\", \"pdf\", \"png\", \"ps\", \"raw\", \"svg\", \"tif\", \"webp\"];\n",
       "\n",
       "mpl.default_extension = \"png\";/* global mpl */\n",
       "\n",
       "var comm_websocket_adapter = function (comm) {\n",
       "    // Create a \"websocket\"-like object which calls the given IPython comm\n",
       "    // object with the appropriate methods. Currently this is a non binary\n",
       "    // socket, so there is still some room for performance tuning.\n",
       "    var ws = {};\n",
       "\n",
       "    ws.binaryType = comm.kernel.ws.binaryType;\n",
       "    ws.readyState = comm.kernel.ws.readyState;\n",
       "    function updateReadyState(_event) {\n",
       "        if (comm.kernel.ws) {\n",
       "            ws.readyState = comm.kernel.ws.readyState;\n",
       "        } else {\n",
       "            ws.readyState = 3; // Closed state.\n",
       "        }\n",
       "    }\n",
       "    comm.kernel.ws.addEventListener('open', updateReadyState);\n",
       "    comm.kernel.ws.addEventListener('close', updateReadyState);\n",
       "    comm.kernel.ws.addEventListener('error', updateReadyState);\n",
       "\n",
       "    ws.close = function () {\n",
       "        comm.close();\n",
       "    };\n",
       "    ws.send = function (m) {\n",
       "        //console.log('sending', m);\n",
       "        comm.send(m);\n",
       "    };\n",
       "    // Register the callback with on_msg.\n",
       "    comm.on_msg(function (msg) {\n",
       "        //console.log('receiving', msg['content']['data'], msg);\n",
       "        var data = msg['content']['data'];\n",
       "        if (data['blob'] !== undefined) {\n",
       "            data = {\n",
       "                data: new Blob(msg['buffers'], { type: data['blob'] }),\n",
       "            };\n",
       "        }\n",
       "        // Pass the mpl event to the overridden (by mpl) onmessage function.\n",
       "        ws.onmessage(data);\n",
       "    });\n",
       "    return ws;\n",
       "};\n",
       "\n",
       "mpl.mpl_figure_comm = function (comm, msg) {\n",
       "    // This is the function which gets called when the mpl process\n",
       "    // starts-up an IPython Comm through the \"matplotlib\" channel.\n",
       "\n",
       "    var id = msg.content.data.id;\n",
       "    // Get hold of the div created by the display call when the Comm\n",
       "    // socket was opened in Python.\n",
       "    var element = document.getElementById(id);\n",
       "    var ws_proxy = comm_websocket_adapter(comm);\n",
       "\n",
       "    function ondownload(figure, _format) {\n",
       "        window.open(figure.canvas.toDataURL());\n",
       "    }\n",
       "\n",
       "    var fig = new mpl.figure(id, ws_proxy, ondownload, element);\n",
       "\n",
       "    // Call onopen now - mpl needs it, as it is assuming we've passed it a real\n",
       "    // web socket which is closed, not our websocket->open comm proxy.\n",
       "    ws_proxy.onopen();\n",
       "\n",
       "    fig.parent_element = element;\n",
       "    fig.cell_info = mpl.find_output_cell(\"<div id='\" + id + \"'></div>\");\n",
       "    if (!fig.cell_info) {\n",
       "        console.error('Failed to find cell for figure', id, fig);\n",
       "        return;\n",
       "    }\n",
       "    fig.cell_info[0].output_area.element.on(\n",
       "        'cleared',\n",
       "        { fig: fig },\n",
       "        fig._remove_fig_handler\n",
       "    );\n",
       "};\n",
       "\n",
       "mpl.figure.prototype.handle_close = function (fig, msg) {\n",
       "    var width = fig.canvas.width / fig.ratio;\n",
       "    fig.cell_info[0].output_area.element.off(\n",
       "        'cleared',\n",
       "        fig._remove_fig_handler\n",
       "    );\n",
       "    fig.resizeObserverInstance.unobserve(fig.canvas_div);\n",
       "\n",
       "    // Update the output cell to use the data from the current canvas.\n",
       "    fig.push_to_output();\n",
       "    var dataURL = fig.canvas.toDataURL();\n",
       "    // Re-enable the keyboard manager in IPython - without this line, in FF,\n",
       "    // the notebook keyboard shortcuts fail.\n",
       "    IPython.keyboard_manager.enable();\n",
       "    fig.parent_element.innerHTML =\n",
       "        '<img src=\"' + dataURL + '\" width=\"' + width + '\">';\n",
       "    fig.close_ws(fig, msg);\n",
       "};\n",
       "\n",
       "mpl.figure.prototype.close_ws = function (fig, msg) {\n",
       "    fig.send_message('closing', msg);\n",
       "    // fig.ws.close()\n",
       "};\n",
       "\n",
       "mpl.figure.prototype.push_to_output = function (_remove_interactive) {\n",
       "    // Turn the data on the canvas into data in the output cell.\n",
       "    var width = this.canvas.width / this.ratio;\n",
       "    var dataURL = this.canvas.toDataURL();\n",
       "    this.cell_info[1]['text/html'] =\n",
       "        '<img src=\"' + dataURL + '\" width=\"' + width + '\">';\n",
       "};\n",
       "\n",
       "mpl.figure.prototype.updated_canvas_event = function () {\n",
       "    // Tell IPython that the notebook contents must change.\n",
       "    IPython.notebook.set_dirty(true);\n",
       "    this.send_message('ack', {});\n",
       "    var fig = this;\n",
       "    // Wait a second, then push the new image to the DOM so\n",
       "    // that it is saved nicely (might be nice to debounce this).\n",
       "    setTimeout(function () {\n",
       "        fig.push_to_output();\n",
       "    }, 1000);\n",
       "};\n",
       "\n",
       "mpl.figure.prototype._init_toolbar = function () {\n",
       "    var fig = this;\n",
       "\n",
       "    var toolbar = document.createElement('div');\n",
       "    toolbar.classList = 'btn-toolbar';\n",
       "    this.root.appendChild(toolbar);\n",
       "\n",
       "    function on_click_closure(name) {\n",
       "        return function (_event) {\n",
       "            return fig.toolbar_button_onclick(name);\n",
       "        };\n",
       "    }\n",
       "\n",
       "    function on_mouseover_closure(tooltip) {\n",
       "        return function (event) {\n",
       "            if (!event.currentTarget.disabled) {\n",
       "                return fig.toolbar_button_onmouseover(tooltip);\n",
       "            }\n",
       "        };\n",
       "    }\n",
       "\n",
       "    fig.buttons = {};\n",
       "    var buttonGroup = document.createElement('div');\n",
       "    buttonGroup.classList = 'btn-group';\n",
       "    var button;\n",
       "    for (var toolbar_ind in mpl.toolbar_items) {\n",
       "        var name = mpl.toolbar_items[toolbar_ind][0];\n",
       "        var tooltip = mpl.toolbar_items[toolbar_ind][1];\n",
       "        var image = mpl.toolbar_items[toolbar_ind][2];\n",
       "        var method_name = mpl.toolbar_items[toolbar_ind][3];\n",
       "\n",
       "        if (!name) {\n",
       "            /* Instead of a spacer, we start a new button group. */\n",
       "            if (buttonGroup.hasChildNodes()) {\n",
       "                toolbar.appendChild(buttonGroup);\n",
       "            }\n",
       "            buttonGroup = document.createElement('div');\n",
       "            buttonGroup.classList = 'btn-group';\n",
       "            continue;\n",
       "        }\n",
       "\n",
       "        button = fig.buttons[name] = document.createElement('button');\n",
       "        button.classList = 'btn btn-default';\n",
       "        button.href = '#';\n",
       "        button.title = name;\n",
       "        button.innerHTML = '<i class=\"fa ' + image + ' fa-lg\"></i>';\n",
       "        button.addEventListener('click', on_click_closure(method_name));\n",
       "        button.addEventListener('mouseover', on_mouseover_closure(tooltip));\n",
       "        buttonGroup.appendChild(button);\n",
       "    }\n",
       "\n",
       "    if (buttonGroup.hasChildNodes()) {\n",
       "        toolbar.appendChild(buttonGroup);\n",
       "    }\n",
       "\n",
       "    // Add the status bar.\n",
       "    var status_bar = document.createElement('span');\n",
       "    status_bar.classList = 'mpl-message pull-right';\n",
       "    toolbar.appendChild(status_bar);\n",
       "    this.message = status_bar;\n",
       "\n",
       "    // Add the close button to the window.\n",
       "    var buttongrp = document.createElement('div');\n",
       "    buttongrp.classList = 'btn-group inline pull-right';\n",
       "    button = document.createElement('button');\n",
       "    button.classList = 'btn btn-mini btn-primary';\n",
       "    button.href = '#';\n",
       "    button.title = 'Stop Interaction';\n",
       "    button.innerHTML = '<i class=\"fa fa-power-off icon-remove icon-large\"></i>';\n",
       "    button.addEventListener('click', function (_evt) {\n",
       "        fig.handle_close(fig, {});\n",
       "    });\n",
       "    button.addEventListener(\n",
       "        'mouseover',\n",
       "        on_mouseover_closure('Stop Interaction')\n",
       "    );\n",
       "    buttongrp.appendChild(button);\n",
       "    var titlebar = this.root.querySelector('.ui-dialog-titlebar');\n",
       "    titlebar.insertBefore(buttongrp, titlebar.firstChild);\n",
       "};\n",
       "\n",
       "mpl.figure.prototype._remove_fig_handler = function (event) {\n",
       "    var fig = event.data.fig;\n",
       "    if (event.target !== this) {\n",
       "        // Ignore bubbled events from children.\n",
       "        return;\n",
       "    }\n",
       "    fig.close_ws(fig, {});\n",
       "};\n",
       "\n",
       "mpl.figure.prototype._root_extra_style = function (el) {\n",
       "    el.style.boxSizing = 'content-box'; // override notebook setting of border-box.\n",
       "};\n",
       "\n",
       "mpl.figure.prototype._canvas_extra_style = function (el) {\n",
       "    // this is important to make the div 'focusable\n",
       "    el.setAttribute('tabindex', 0);\n",
       "    // reach out to IPython and tell the keyboard manager to turn it's self\n",
       "    // off when our div gets focus\n",
       "\n",
       "    // location in version 3\n",
       "    if (IPython.notebook.keyboard_manager) {\n",
       "        IPython.notebook.keyboard_manager.register_events(el);\n",
       "    } else {\n",
       "        // location in version 2\n",
       "        IPython.keyboard_manager.register_events(el);\n",
       "    }\n",
       "};\n",
       "\n",
       "mpl.figure.prototype._key_event_extra = function (event, _name) {\n",
       "    // Check for shift+enter\n",
       "    if (event.shiftKey && event.which === 13) {\n",
       "        this.canvas_div.blur();\n",
       "        // select the cell after this one\n",
       "        var index = IPython.notebook.find_cell_index(this.cell_info[0]);\n",
       "        IPython.notebook.select(index + 1);\n",
       "    }\n",
       "};\n",
       "\n",
       "mpl.figure.prototype.handle_save = function (fig, _msg) {\n",
       "    fig.ondownload(fig, null);\n",
       "};\n",
       "\n",
       "mpl.find_output_cell = function (html_output) {\n",
       "    // Return the cell and output element which can be found *uniquely* in the notebook.\n",
       "    // Note - this is a bit hacky, but it is done because the \"notebook_saving.Notebook\"\n",
       "    // IPython event is triggered only after the cells have been serialised, which for\n",
       "    // our purposes (turning an active figure into a static one), is too late.\n",
       "    var cells = IPython.notebook.get_cells();\n",
       "    var ncells = cells.length;\n",
       "    for (var i = 0; i < ncells; i++) {\n",
       "        var cell = cells[i];\n",
       "        if (cell.cell_type === 'code') {\n",
       "            for (var j = 0; j < cell.output_area.outputs.length; j++) {\n",
       "                var data = cell.output_area.outputs[j];\n",
       "                if (data.data) {\n",
       "                    // IPython >= 3 moved mimebundle to data attribute of output\n",
       "                    data = data.data;\n",
       "                }\n",
       "                if (data['text/html'] === html_output) {\n",
       "                    return [cell, data, j];\n",
       "                }\n",
       "            }\n",
       "        }\n",
       "    }\n",
       "};\n",
       "\n",
       "// Register the function which deals with the matplotlib target/channel.\n",
       "// The kernel may be null if the page has been refreshed.\n",
       "if (IPython.notebook.kernel !== null) {\n",
       "    IPython.notebook.kernel.comm_manager.register_target(\n",
       "        'matplotlib',\n",
       "        mpl.mpl_figure_comm\n",
       "    );\n",
       "}\n"
      ],
      "text/plain": [
       "<IPython.core.display.Javascript object>"
      ]
     },
     "metadata": {},
     "output_type": "display_data"
    },
    {
     "data": {
      "text/html": [
       "<img src=\"data:image/png;base64,[encoded data, 233876 characters]\" width=\"960\">"
      ],
      "text/plain": [
       "<IPython.core.display.HTML object>"
      ]
     },
     "metadata": {},
     "output_type": "display_data"
    }
   ],
   "source": [
    "fig, axs = plt.subplots(nrows=2, figsize=[6.4*1.5, 4.8*1.5], sharex=True, height_ratios=[1.5, 1])\n",
    "fig.subplots_adjust(hspace=0)\n",
    "axs[0].set_title(\"hw = {}\".format(hw))\n",
    "m = autoks < 40\n",
    "mu = np.mean(pks, axis=0)\n",
    "for i in range(len(paths.get_ics)):\n",
    "    axs[0].plot(autoks[m], pks[i, m], c=\"k\", lw=0.1)\n",
    "    axs[1].plot(autoks[m], pks[i, m] / mu[m], c=\"k\", lw=0.1)\n",
    "axs[0].plot(autoks[m], mu[m], c=\"red\", lw=1, label=r\"$\\langle P(k) \\rangle$\")\n",
    "\n",
    "m = (darkskyps[:, 0] > autoks.min()) & (darkskyps[:, 0] < autoks.max()) \n",
    "axs[0].plot(darkskyps[m, 0], darkskyps[m, 1], label=r\"Darksky 2014\")\n",
    "\n",
    "axs[0].plot(kh_nonlin, pk_nonlin[0, :], label=\"CAMB\")\n",
    "\n",
    "m = (borg[:, 0] > autoks.min()) & (borg[:, 0] < autoks.max()) \n",
    "axs[0].plot(borg[m, 0], borg[m, 1], label=\"Jasche & Lavaux 2018\")\n",
    "axs[1].axhline(1, c=\"red\", ls=\"--\")\n",
    "\n",
    "axs[1].set_xlabel(r\"$k~\\left[h / \\mathrm{Mpc}\\right]$\")\n",
    "axs[0].set_ylabel(r\"$P(k)~\\left[(\\mathrm{Mpc} / h)^3 \\right]$\")\n",
    "axs[1].set_ylabel(r\"$P(k) / \\langle P(k) \\rangle $\")\n",
    "for i in range(2):\n",
    "    axs[i].set_xscale(\"log\")\n",
    "#     axs[i].axvline(1 / 2.65, c=\"green\", ls=\"--\", label=r\"$1 / 2.65~\\left[h / \\mathrm{Mpc}\\right]$\")\n",
    "axs[0].set_yscale(\"log\")\n",
    "axs[0].legend()\n",
    "plt.tight_layout()\n",
    "fig.savefig(\"../plots/autopk_{}.png\".format(hw), dpi=450)\n",
    "plt.show()"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 16,
   "id": "9cb019f6",
   "metadata": {
    "ExecuteTime": {
     "end_time": "2022-12-12T13:54:26.382903Z",
     "start_time": "2022-12-12T13:54:25.405402Z"
    },
    "scrolled": false
   },
   "outputs": [
    {
     "data": {
      "application/javascript": [
       "/* Put everything inside the global mpl namespace */\n",
       "/* global mpl */\n",
       "window.mpl = {};\n",
       "\n",
       "mpl.get_websocket_type = function () {\n",
       "    if (typeof WebSocket !== 'undefined') {\n",
       "        return WebSocket;\n",
       "    } else if (typeof MozWebSocket !== 'undefined') {\n",
       "        return MozWebSocket;\n",
       "    } else {\n",
       "        alert(\n",
       "            'Your browser does not have WebSocket support. ' +\n",
       "                'Please try Chrome, Safari or Firefox ≥ 6. ' +\n",
       "                'Firefox 4 and 5 are also supported but you ' +\n",
       "                'have to enable WebSockets in about:config.'\n",
       "        );\n",
       "    }\n",
       "};\n",
       "\n",
       "mpl.figure = function (figure_id, websocket, ondownload, parent_element) {\n",
       "    this.id = figure_id;\n",
       "\n",
       "    this.ws = websocket;\n",
       "\n",
       "    this.supports_binary = this.ws.binaryType !== undefined;\n",
       "\n",
       "    if (!this.supports_binary) {\n",
       "        var warnings = document.getElementById('mpl-warnings');\n",
       "        if (warnings) {\n",
       "            warnings.style.display = 'block';\n",
       "            warnings.textContent =\n",
       "                'This browser does not support binary websocket messages. ' +\n",
       "                'Performance may be slow.';\n",
       "        }\n",
       "    }\n",
       "\n",
       "    this.imageObj = new Image();\n",
       "\n",
       "    this.context = undefined;\n",
       "    this.message = undefined;\n",
       "    this.canvas = undefined;\n",
       "    this.rubberband_canvas = undefined;\n",
       "    this.rubberband_context = undefined;\n",
       "    this.format_dropdown = undefined;\n",
       "\n",
       "    this.image_mode = 'full';\n",
       "\n",
       "    this.root = document.createElement('div');\n",
       "    this.root.setAttribute('style', 'display: inline-block');\n",
       "    this._root_extra_style(this.root);\n",
       "\n",
       "    parent_element.appendChild(this.root);\n",
       "\n",
       "    this._init_header(this);\n",
       "    this._init_canvas(this);\n",
       "    this._init_toolbar(this);\n",
       "\n",
       "    var fig = this;\n",
       "\n",
       "    this.waiting = false;\n",
       "\n",
       "    this.ws.onopen = function () {\n",
       "        fig.send_message('supports_binary', { value: fig.supports_binary });\n",
       "        fig.send_message('send_image_mode', {});\n",
       "        if (fig.ratio !== 1) {\n",
       "            fig.send_message('set_device_pixel_ratio', {\n",
       "                device_pixel_ratio: fig.ratio,\n",
       "            });\n",
       "        }\n",
       "        fig.send_message('refresh', {});\n",
       "    };\n",
       "\n",
       "    this.imageObj.onload = function () {\n",
       "        if (fig.image_mode === 'full') {\n",
       "            // Full images could contain transparency (where diff images\n",
       "            // almost always do), so we need to clear the canvas so that\n",
       "            // there is no ghosting.\n",
       "            fig.context.clearRect(0, 0, fig.canvas.width, fig.canvas.height);\n",
       "        }\n",
       "        fig.context.drawImage(fig.imageObj, 0, 0);\n",
       "    };\n",
       "\n",
       "    this.imageObj.onunload = function () {\n",
       "        fig.ws.close();\n",
       "    };\n",
       "\n",
       "    this.ws.onmessage = this._make_on_message_function(this);\n",
       "\n",
       "    this.ondownload = ondownload;\n",
       "};\n",
       "\n",
       "mpl.figure.prototype._init_header = function () {\n",
       "    var titlebar = document.createElement('div');\n",
       "    titlebar.classList =\n",
       "        'ui-dialog-titlebar ui-widget-header ui-corner-all ui-helper-clearfix';\n",
       "    var titletext = document.createElement('div');\n",
       "    titletext.classList = 'ui-dialog-title';\n",
       "    titletext.setAttribute(\n",
       "        'style',\n",
       "        'width: 100%; text-align: center; padding: 3px;'\n",
       "    );\n",
       "    titlebar.appendChild(titletext);\n",
       "    this.root.appendChild(titlebar);\n",
       "    this.header = titletext;\n",
       "};\n",
       "\n",
       "mpl.figure.prototype._canvas_extra_style = function (_canvas_div) {};\n",
       "\n",
       "mpl.figure.prototype._root_extra_style = function (_canvas_div) {};\n",
       "\n",
       "mpl.figure.prototype._init_canvas = function () {\n",
       "    var fig = this;\n",
       "\n",
       "    var canvas_div = (this.canvas_div = document.createElement('div'));\n",
       "    canvas_div.setAttribute(\n",
       "        'style',\n",
       "        'border: 1px solid #ddd;' +\n",
       "            'box-sizing: content-box;' +\n",
       "            'clear: both;' +\n",
       "            'min-height: 1px;' +\n",
       "            'min-width: 1px;' +\n",
       "            'outline: 0;' +\n",
       "            'overflow: hidden;' +\n",
       "            'position: relative;' +\n",
       "            'resize: both;'\n",
       "    );\n",
       "\n",
       "    function on_keyboard_event_closure(name) {\n",
       "        return function (event) {\n",
       "            return fig.key_event(event, name);\n",
       "        };\n",
       "    }\n",
       "\n",
       "    canvas_div.addEventListener(\n",
       "        'keydown',\n",
       "        on_keyboard_event_closure('key_press')\n",
       "    );\n",
       "    canvas_div.addEventListener(\n",
       "        'keyup',\n",
       "        on_keyboard_event_closure('key_release')\n",
       "    );\n",
       "\n",
       "    this._canvas_extra_style(canvas_div);\n",
       "    this.root.appendChild(canvas_div);\n",
       "\n",
       "    var canvas = (this.canvas = document.createElement('canvas'));\n",
       "    canvas.classList.add('mpl-canvas');\n",
       "    canvas.setAttribute('style', 'box-sizing: content-box;');\n",
       "\n",
       "    this.context = canvas.getContext('2d');\n",
       "\n",
       "    var backingStore =\n",
       "        this.context.backingStorePixelRatio ||\n",
       "        this.context.webkitBackingStorePixelRatio ||\n",
       "        this.context.mozBackingStorePixelRatio ||\n",
       "        this.context.msBackingStorePixelRatio ||\n",
       "        this.context.oBackingStorePixelRatio ||\n",
       "        this.context.backingStorePixelRatio ||\n",
       "        1;\n",
       "\n",
       "    this.ratio = (window.devicePixelRatio || 1) / backingStore;\n",
       "\n",
       "    var rubberband_canvas = (this.rubberband_canvas = document.createElement(\n",
       "        'canvas'\n",
       "    ));\n",
       "    rubberband_canvas.setAttribute(\n",
       "        'style',\n",
       "        'box-sizing: content-box; position: absolute; left: 0; top: 0; z-index: 1;'\n",
       "    );\n",
       "\n",
       "    // Apply a ponyfill if ResizeObserver is not implemented by browser.\n",
       "    if (this.ResizeObserver === undefined) {\n",
       "        if (window.ResizeObserver !== undefined) {\n",
       "            this.ResizeObserver = window.ResizeObserver;\n",
       "        } else {\n",
       "            var obs = _JSXTOOLS_RESIZE_OBSERVER({});\n",
       "            this.ResizeObserver = obs.ResizeObserver;\n",
       "        }\n",
       "    }\n",
       "\n",
       "    this.resizeObserverInstance = new this.ResizeObserver(function (entries) {\n",
       "        var nentries = entries.length;\n",
       "        for (var i = 0; i < nentries; i++) {\n",
       "            var entry = entries[i];\n",
       "            var width, height;\n",
       "            if (entry.contentBoxSize) {\n",
       "                if (entry.contentBoxSize instanceof Array) {\n",
       "                    // Chrome 84 implements new version of spec.\n",
       "                    width = entry.contentBoxSize[0].inlineSize;\n",
       "                    height = entry.contentBoxSize[0].blockSize;\n",
       "                } else {\n",
       "                    // Firefox implements old version of spec.\n",
       "                    width = entry.contentBoxSize.inlineSize;\n",
       "                    height = entry.contentBoxSize.blockSize;\n",
       "                }\n",
       "            } else {\n",
       "                // Chrome <84 implements even older version of spec.\n",
       "                width = entry.contentRect.width;\n",
       "                height = entry.contentRect.height;\n",
       "            }\n",
       "\n",
       "            // Keep the size of the canvas and rubber band canvas in sync with\n",
       "            // the canvas container.\n",
       "            if (entry.devicePixelContentBoxSize) {\n",
       "                // Chrome 84 implements new version of spec.\n",
       "                canvas.setAttribute(\n",
       "                    'width',\n",
       "                    entry.devicePixelContentBoxSize[0].inlineSize\n",
       "                );\n",
       "                canvas.setAttribute(\n",
       "                    'height',\n",
       "                    entry.devicePixelContentBoxSize[0].blockSize\n",
       "                );\n",
       "            } else {\n",
       "                canvas.setAttribute('width', width * fig.ratio);\n",
       "                canvas.setAttribute('height', height * fig.ratio);\n",
       "            }\n",
       "            canvas.setAttribute(\n",
       "                'style',\n",
       "                'width: ' + width + 'px; height: ' + height + 'px;'\n",
       "            );\n",
       "\n",
       "            rubberband_canvas.setAttribute('width', width);\n",
       "            rubberband_canvas.setAttribute('height', height);\n",
       "\n",
       "            // And update the size in Python. We ignore the initial 0/0 size\n",
       "            // that occurs as the element is placed into the DOM, which should\n",
       "            // otherwise not happen due to the minimum size styling.\n",
       "            if (fig.ws.readyState == 1 && width != 0 && height != 0) {\n",
       "                fig.request_resize(width, height);\n",
       "            }\n",
       "        }\n",
       "    });\n",
       "    this.resizeObserverInstance.observe(canvas_div);\n",
       "\n",
       "    function on_mouse_event_closure(name) {\n",
       "        return function (event) {\n",
       "            return fig.mouse_event(event, name);\n",
       "        };\n",
       "    }\n",
       "\n",
       "    rubberband_canvas.addEventListener(\n",
       "        'mousedown',\n",
       "        on_mouse_event_closure('button_press')\n",
       "    );\n",
       "    rubberband_canvas.addEventListener(\n",
       "        'mouseup',\n",
       "        on_mouse_event_closure('button_release')\n",
       "    );\n",
       "    rubberband_canvas.addEventListener(\n",
       "        'dblclick',\n",
       "        on_mouse_event_closure('dblclick')\n",
       "    );\n",
       "    // Throttle sequential mouse events to 1 every 20ms.\n",
       "    rubberband_canvas.addEventListener(\n",
       "        'mousemove',\n",
       "        on_mouse_event_closure('motion_notify')\n",
       "    );\n",
       "\n",
       "    rubberband_canvas.addEventListener(\n",
       "        'mouseenter',\n",
       "        on_mouse_event_closure('figure_enter')\n",
       "    );\n",
       "    rubberband_canvas.addEventListener(\n",
       "        'mouseleave',\n",
       "        on_mouse_event_closure('figure_leave')\n",
       "    );\n",
       "\n",
       "    canvas_div.addEventListener('wheel', function (event) {\n",
       "        if (event.deltaY < 0) {\n",
       "            event.step = 1;\n",
       "        } else {\n",
       "            event.step = -1;\n",
       "        }\n",
       "        on_mouse_event_closure('scroll')(event);\n",
       "    });\n",
       "\n",
       "    canvas_div.appendChild(canvas);\n",
       "    canvas_div.appendChild(rubberband_canvas);\n",
       "\n",
       "    this.rubberband_context = rubberband_canvas.getContext('2d');\n",
       "    this.rubberband_context.strokeStyle = '#000000';\n",
       "\n",
       "    this._resize_canvas = function (width, height, forward) {\n",
       "        if (forward) {\n",
       "            canvas_div.style.width = width + 'px';\n",
       "            canvas_div.style.height = height + 'px';\n",
       "        }\n",
       "    };\n",
       "\n",
       "    // Disable right mouse context menu.\n",
       "    this.rubberband_canvas.addEventListener('contextmenu', function (_e) {\n",
       "        event.preventDefault();\n",
       "        return false;\n",
       "    });\n",
       "\n",
       "    function set_focus() {\n",
       "        canvas.focus();\n",
       "        canvas_div.focus();\n",
       "    }\n",
       "\n",
       "    window.setTimeout(set_focus, 100);\n",
       "};\n",
       "\n",
       "mpl.figure.prototype._init_toolbar = function () {\n",
       "    var fig = this;\n",
       "\n",
       "    var toolbar = document.createElement('div');\n",
       "    toolbar.classList = 'mpl-toolbar';\n",
       "    this.root.appendChild(toolbar);\n",
       "\n",
       "    function on_click_closure(name) {\n",
       "        return function (_event) {\n",
       "            return fig.toolbar_button_onclick(name);\n",
       "        };\n",
       "    }\n",
       "\n",
       "    function on_mouseover_closure(tooltip) {\n",
       "        return function (event) {\n",
       "            if (!event.currentTarget.disabled) {\n",
       "                return fig.toolbar_button_onmouseover(tooltip);\n",
       "            }\n",
       "        };\n",
       "    }\n",
       "\n",
       "    fig.buttons = {};\n",
       "    var buttonGroup = document.createElement('div');\n",
       "    buttonGroup.classList = 'mpl-button-group';\n",
       "    for (var toolbar_ind in mpl.toolbar_items) {\n",
       "        var name = mpl.toolbar_items[toolbar_ind][0];\n",
       "        var tooltip = mpl.toolbar_items[toolbar_ind][1];\n",
       "        var image = mpl.toolbar_items[toolbar_ind][2];\n",
       "        var method_name = mpl.toolbar_items[toolbar_ind][3];\n",
       "\n",
       "        if (!name) {\n",
       "            /* Instead of a spacer, we start a new button group. */\n",
       "            if (buttonGroup.hasChildNodes()) {\n",
       "                toolbar.appendChild(buttonGroup);\n",
       "            }\n",
       "            buttonGroup = document.createElement('div');\n",
       "            buttonGroup.classList = 'mpl-button-group';\n",
       "            continue;\n",
       "        }\n",
       "\n",
       "        var button = (fig.buttons[name] = document.createElement('button'));\n",
       "        button.classList = 'mpl-widget';\n",
       "        button.setAttribute('role', 'button');\n",
       "        button.setAttribute('aria-disabled', 'false');\n",
       "        button.addEventListener('click', on_click_closure(method_name));\n",
       "        button.addEventListener('mouseover', on_mouseover_closure(tooltip));\n",
       "\n",
       "        var icon_img = document.createElement('img');\n",
       "        icon_img.src = '_images/' + image + '.png';\n",
       "        icon_img.srcset = '_images/' + image + '_large.png 2x';\n",
       "        icon_img.alt = tooltip;\n",
       "        button.appendChild(icon_img);\n",
       "\n",
       "        buttonGroup.appendChild(button);\n",
       "    }\n",
       "\n",
       "    if (buttonGroup.hasChildNodes()) {\n",
       "        toolbar.appendChild(buttonGroup);\n",
       "    }\n",
       "\n",
       "    var fmt_picker = document.createElement('select');\n",
       "    fmt_picker.classList = 'mpl-widget';\n",
       "    toolbar.appendChild(fmt_picker);\n",
       "    this.format_dropdown = fmt_picker;\n",
       "\n",
       "    for (var ind in mpl.extensions) {\n",
       "        var fmt = mpl.extensions[ind];\n",
       "        var option = document.createElement('option');\n",
       "        option.selected = fmt === mpl.default_extension;\n",
       "        option.innerHTML = fmt;\n",
       "        fmt_picker.appendChild(option);\n",
       "    }\n",
       "\n",
       "    var status_bar = document.createElement('span');\n",
       "    status_bar.classList = 'mpl-message';\n",
       "    toolbar.appendChild(status_bar);\n",
       "    this.message = status_bar;\n",
       "};\n",
       "\n",
       "mpl.figure.prototype.request_resize = function (x_pixels, y_pixels) {\n",
       "    // Request matplotlib to resize the figure. Matplotlib will then trigger a resize in the client,\n",
       "    // which will in turn request a refresh of the image.\n",
       "    this.send_message('resize', { width: x_pixels, height: y_pixels });\n",
       "};\n",
       "\n",
       "mpl.figure.prototype.send_message = function (type, properties) {\n",
       "    properties['type'] = type;\n",
       "    properties['figure_id'] = this.id;\n",
       "    this.ws.send(JSON.stringify(properties));\n",
       "};\n",
       "\n",
       "mpl.figure.prototype.send_draw_message = function () {\n",
       "    if (!this.waiting) {\n",
       "        this.waiting = true;\n",
       "        this.ws.send(JSON.stringify({ type: 'draw', figure_id: this.id }));\n",
       "    }\n",
       "};\n",
       "\n",
       "mpl.figure.prototype.handle_save = function (fig, _msg) {\n",
       "    var format_dropdown = fig.format_dropdown;\n",
       "    var format = format_dropdown.options[format_dropdown.selectedIndex].value;\n",
       "    fig.ondownload(fig, format);\n",
       "};\n",
       "\n",
       "mpl.figure.prototype.handle_resize = function (fig, msg) {\n",
       "    var size = msg['size'];\n",
       "    if (size[0] !== fig.canvas.width || size[1] !== fig.canvas.height) {\n",
       "        fig._resize_canvas(size[0], size[1], msg['forward']);\n",
       "        fig.send_message('refresh', {});\n",
       "    }\n",
       "};\n",
       "\n",
       "mpl.figure.prototype.handle_rubberband = function (fig, msg) {\n",
       "    var x0 = msg['x0'] / fig.ratio;\n",
       "    var y0 = (fig.canvas.height - msg['y0']) / fig.ratio;\n",
       "    var x1 = msg['x1'] / fig.ratio;\n",
       "    var y1 = (fig.canvas.height - msg['y1']) / fig.ratio;\n",
       "    x0 = Math.floor(x0) + 0.5;\n",
       "    y0 = Math.floor(y0) + 0.5;\n",
       "    x1 = Math.floor(x1) + 0.5;\n",
       "    y1 = Math.floor(y1) + 0.5;\n",
       "    var min_x = Math.min(x0, x1);\n",
       "    var min_y = Math.min(y0, y1);\n",
       "    var width = Math.abs(x1 - x0);\n",
       "    var height = Math.abs(y1 - y0);\n",
       "\n",
       "    fig.rubberband_context.clearRect(\n",
       "        0,\n",
       "        0,\n",
       "        fig.canvas.width / fig.ratio,\n",
       "        fig.canvas.height / fig.ratio\n",
       "    );\n",
       "\n",
       "    fig.rubberband_context.strokeRect(min_x, min_y, width, height);\n",
       "};\n",
       "\n",
       "mpl.figure.prototype.handle_figure_label = function (fig, msg) {\n",
       "    // Updates the figure title.\n",
       "    fig.header.textContent = msg['label'];\n",
       "};\n",
       "\n",
       "mpl.figure.prototype.handle_cursor = function (fig, msg) {\n",
       "    fig.rubberband_canvas.style.cursor = msg['cursor'];\n",
       "};\n",
       "\n",
       "mpl.figure.prototype.handle_message = function (fig, msg) {\n",
       "    fig.message.textContent = msg['message'];\n",
       "};\n",
       "\n",
       "mpl.figure.prototype.handle_draw = function (fig, _msg) {\n",
       "    // Request the server to send over a new figure.\n",
       "    fig.send_draw_message();\n",
       "};\n",
       "\n",
       "mpl.figure.prototype.handle_image_mode = function (fig, msg) {\n",
       "    fig.image_mode = msg['mode'];\n",
       "};\n",
       "\n",
       "mpl.figure.prototype.handle_history_buttons = function (fig, msg) {\n",
       "    for (var key in msg) {\n",
       "        if (!(key in fig.buttons)) {\n",
       "            continue;\n",
       "        }\n",
       "        fig.buttons[key].disabled = !msg[key];\n",
       "        fig.buttons[key].setAttribute('aria-disabled', !msg[key]);\n",
       "    }\n",
       "};\n",
       "\n",
       "mpl.figure.prototype.handle_navigate_mode = function (fig, msg) {\n",
       "    if (msg['mode'] === 'PAN') {\n",
       "        fig.buttons['Pan'].classList.add('active');\n",
       "        fig.buttons['Zoom'].classList.remove('active');\n",
       "    } else if (msg['mode'] === 'ZOOM') {\n",
       "        fig.buttons['Pan'].classList.remove('active');\n",
       "        fig.buttons['Zoom'].classList.add('active');\n",
       "    } else {\n",
       "        fig.buttons['Pan'].classList.remove('active');\n",
       "        fig.buttons['Zoom'].classList.remove('active');\n",
       "    }\n",
       "};\n",
       "\n",
       "mpl.figure.prototype.updated_canvas_event = function () {\n",
       "    // Called whenever the canvas gets updated.\n",
       "    this.send_message('ack', {});\n",
       "};\n",
       "\n",
       "// A function to construct a web socket function for onmessage handling.\n",
       "// Called in the figure constructor.\n",
       "mpl.figure.prototype._make_on_message_function = function (fig) {\n",
       "    return function socket_on_message(evt) {\n",
       "        if (evt.data instanceof Blob) {\n",
       "            var img = evt.data;\n",
       "            if (img.type !== 'image/png') {\n",
       "                /* FIXME: We get \"Resource interpreted as Image but\n",
       "                 * transferred with MIME type text/plain:\" errors on\n",
       "                 * Chrome.  But how to set the MIME type?  It doesn't seem\n",
       "                 * to be part of the websocket stream */\n",
       "                img.type = 'image/png';\n",
       "            }\n",
       "\n",
       "            /* Free the memory for the previous frames */\n",
       "            if (fig.imageObj.src) {\n",
       "                (window.URL || window.webkitURL).revokeObjectURL(\n",
       "                    fig.imageObj.src\n",
       "                );\n",
       "            }\n",
       "\n",
       "            fig.imageObj.src = (window.URL || window.webkitURL).createObjectURL(\n",
       "                img\n",
       "            );\n",
       "            fig.updated_canvas_event();\n",
       "            fig.waiting = false;\n",
       "            return;\n",
       "        } else if (\n",
       "            typeof evt.data === 'string' &&\n",
       "            evt.data.slice(0, 21) === 'data:image/png;base64'\n",
       "        ) {\n",
       "            fig.imageObj.src = evt.data;\n",
       "            fig.updated_canvas_event();\n",
       "            fig.waiting = false;\n",
       "            return;\n",
       "        }\n",
       "\n",
       "        var msg = JSON.parse(evt.data);\n",
       "        var msg_type = msg['type'];\n",
       "\n",
       "        // Call the  \"handle_{type}\" callback, which takes\n",
       "        // the figure and JSON message as its only arguments.\n",
       "        try {\n",
       "            var callback = fig['handle_' + msg_type];\n",
       "        } catch (e) {\n",
       "            console.log(\n",
       "                \"No handler for the '\" + msg_type + \"' message type: \",\n",
       "                msg\n",
       "            );\n",
       "            return;\n",
       "        }\n",
       "\n",
       "        if (callback) {\n",
       "            try {\n",
       "                // console.log(\"Handling '\" + msg_type + \"' message: \", msg);\n",
       "                callback(fig, msg);\n",
       "            } catch (e) {\n",
       "                console.log(\n",
       "                    \"Exception inside the 'handler_\" + msg_type + \"' callback:\",\n",
       "                    e,\n",
       "                    e.stack,\n",
       "                    msg\n",
       "                );\n",
       "            }\n",
       "        }\n",
       "    };\n",
       "};\n",
       "\n",
       "// from https://stackoverflow.com/questions/1114465/getting-mouse-location-in-canvas\n",
       "mpl.findpos = function (e) {\n",
       "    //this section is from http://www.quirksmode.org/js/events_properties.html\n",
       "    var targ;\n",
       "    if (!e) {\n",
       "        e = window.event;\n",
       "    }\n",
       "    if (e.target) {\n",
       "        targ = e.target;\n",
       "    } else if (e.srcElement) {\n",
       "        targ = e.srcElement;\n",
       "    }\n",
       "    if (targ.nodeType === 3) {\n",
       "        // defeat Safari bug\n",
       "        targ = targ.parentNode;\n",
       "    }\n",
       "\n",
       "    // pageX,Y are the mouse positions relative to the document\n",
       "    var boundingRect = targ.getBoundingClientRect();\n",
       "    var x = e.pageX - (boundingRect.left + document.body.scrollLeft);\n",
       "    var y = e.pageY - (boundingRect.top + document.body.scrollTop);\n",
       "\n",
       "    return { x: x, y: y };\n",
       "};\n",
       "\n",
       "/*\n",
       " * return a copy of an object with only non-object keys\n",
       " * we need this to avoid circular references\n",
       " * https://stackoverflow.com/a/24161582/3208463\n",
       " */\n",
       "function simpleKeys(original) {\n",
       "    return Object.keys(original).reduce(function (obj, key) {\n",
       "        if (typeof original[key] !== 'object') {\n",
       "            obj[key] = original[key];\n",
       "        }\n",
       "        return obj;\n",
       "    }, {});\n",
       "}\n",
       "\n",
       "mpl.figure.prototype.mouse_event = function (event, name) {\n",
       "    var canvas_pos = mpl.findpos(event);\n",
       "\n",
       "    if (name === 'button_press') {\n",
       "        this.canvas.focus();\n",
       "        this.canvas_div.focus();\n",
       "    }\n",
       "\n",
       "    var x = canvas_pos.x * this.ratio;\n",
       "    var y = canvas_pos.y * this.ratio;\n",
       "\n",
       "    this.send_message(name, {\n",
       "        x: x,\n",
       "        y: y,\n",
       "        button: event.button,\n",
       "        step: event.step,\n",
       "        guiEvent: simpleKeys(event),\n",
       "    });\n",
       "\n",
       "    /* This prevents the web browser from automatically changing to\n",
       "     * the text insertion cursor when the button is pressed.  We want\n",
       "     * to control all of the cursor setting manually through the\n",
       "     * 'cursor' event from matplotlib */\n",
       "    event.preventDefault();\n",
       "    return false;\n",
       "};\n",
       "\n",
       "mpl.figure.prototype._key_event_extra = function (_event, _name) {\n",
       "    // Handle any extra behaviour associated with a key event\n",
       "};\n",
       "\n",
       "mpl.figure.prototype.key_event = function (event, name) {\n",
       "    // Prevent repeat events\n",
       "    if (name === 'key_press') {\n",
       "        if (event.key === this._key) {\n",
       "            return;\n",
       "        } else {\n",
       "            this._key = event.key;\n",
       "        }\n",
       "    }\n",
       "    if (name === 'key_release') {\n",
       "        this._key = null;\n",
       "    }\n",
       "\n",
       "    var value = '';\n",
       "    if (event.ctrlKey && event.key !== 'Control') {\n",
       "        value += 'ctrl+';\n",
       "    }\n",
       "    else if (event.altKey && event.key !== 'Alt') {\n",
       "        value += 'alt+';\n",
       "    }\n",
       "    else if (event.shiftKey && event.key !== 'Shift') {\n",
       "        value += 'shift+';\n",
       "    }\n",
       "\n",
       "    value += 'k' + event.key;\n",
       "\n",
       "    this._key_event_extra(event, name);\n",
       "\n",
       "    this.send_message(name, { key: value, guiEvent: simpleKeys(event) });\n",
       "    return false;\n",
       "};\n",
       "\n",
       "mpl.figure.prototype.toolbar_button_onclick = function (name) {\n",
       "    if (name === 'download') {\n",
       "        this.handle_save(this, null);\n",
       "    } else {\n",
       "        this.send_message('toolbar_button', { name: name });\n",
       "    }\n",
       "};\n",
       "\n",
       "mpl.figure.prototype.toolbar_button_onmouseover = function (tooltip) {\n",
       "    this.message.textContent = tooltip;\n",
       "};\n",
       "\n",
       "///////////////// REMAINING CONTENT GENERATED BY embed_js.py /////////////////\n",
       "// prettier-ignore\n",
       "var _JSXTOOLS_RESIZE_OBSERVER=function(A){var t,i=new WeakMap,n=new WeakMap,a=new WeakMap,r=new WeakMap,o=new Set;function s(e){if(!(this instanceof s))throw new TypeError(\"Constructor requires 'new' operator\");i.set(this,e)}function h(){throw new TypeError(\"Function is not a constructor\")}function c(e,t,i,n){e=0 in arguments?Number(arguments[0]):0,t=1 in arguments?Number(arguments[1]):0,i=2 in arguments?Number(arguments[2]):0,n=3 in arguments?Number(arguments[3]):0,this.right=(this.x=this.left=e)+(this.width=i),this.bottom=(this.y=this.top=t)+(this.height=n),Object.freeze(this)}function d(){t=requestAnimationFrame(d);var s=new WeakMap,p=new Set;o.forEach((function(t){r.get(t).forEach((function(i){var r=t instanceof window.SVGElement,o=a.get(t),d=r?0:parseFloat(o.paddingTop),f=r?0:parseFloat(o.paddingRight),l=r?0:parseFloat(o.paddingBottom),u=r?0:parseFloat(o.paddingLeft),g=r?0:parseFloat(o.borderTopWidth),m=r?0:parseFloat(o.borderRightWidth),w=r?0:parseFloat(o.borderBottomWidth),b=u+f,F=d+l,v=(r?0:parseFloat(o.borderLeftWidth))+m,W=g+w,y=r?0:t.offsetHeight-W-t.clientHeight,E=r?0:t.offsetWidth-v-t.clientWidth,R=b+v,z=F+W,M=r?t.width:parseFloat(o.width)-R-E,O=r?t.height:parseFloat(o.height)-z-y;if(n.has(t)){var k=n.get(t);if(k[0]===M&&k[1]===O)return}n.set(t,[M,O]);var S=Object.create(h.prototype);S.target=t,S.contentRect=new c(u,d,M,O),s.has(i)||(s.set(i,[]),p.add(i)),s.get(i).push(S)}))})),p.forEach((function(e){i.get(e).call(e,s.get(e),e)}))}return s.prototype.observe=function(i){if(i instanceof window.Element){r.has(i)||(r.set(i,new Set),o.add(i),a.set(i,window.getComputedStyle(i)));var n=r.get(i);n.has(this)||n.add(this),cancelAnimationFrame(t),t=requestAnimationFrame(d)}},s.prototype.unobserve=function(i){if(i instanceof window.Element&&r.has(i)){var n=r.get(i);n.has(this)&&(n.delete(this),n.size||(r.delete(i),o.delete(i))),n.size||r.delete(i),o.size||cancelAnimationFrame(t)}},A.DOMRectReadOnly=c,A.ResizeObserver=s,A.ResizeObserverEntry=h,A}; // eslint-disable-line\n",
       "mpl.toolbar_items = [[\"Home\", \"Reset original view\", \"fa fa-home\", \"home\"], [\"Back\", \"Back to previous view\", \"fa fa-arrow-left\", \"back\"], [\"Forward\", \"Forward to next view\", \"fa fa-arrow-right\", \"forward\"], [\"\", \"\", \"\", \"\"], [\"Pan\", \"Left button pans, Right button zooms\\nx/y fixes axis, CTRL fixes aspect\", \"fa fa-arrows\", \"pan\"], [\"Zoom\", \"Zoom to rectangle\\nx/y fixes axis\", \"fa fa-square-o\", \"zoom\"], [\"\", \"\", \"\", \"\"], [\"Download\", \"Download plot\", \"fa fa-floppy-o\", \"download\"]];\n",
       "\n",
       "mpl.extensions = [\"eps\", \"jpeg\", \"pgf\", \"pdf\", \"png\", \"ps\", \"raw\", \"svg\", \"tif\", \"webp\"];\n",
       "\n",
       "mpl.default_extension = \"png\";/* global mpl */\n",
       "\n",
       "var comm_websocket_adapter = function (comm) {\n",
       "    // Create a \"websocket\"-like object which calls the given IPython comm\n",
       "    // object with the appropriate methods. Currently this is a non binary\n",
       "    // socket, so there is still some room for performance tuning.\n",
       "    var ws = {};\n",
       "\n",
       "    ws.binaryType = comm.kernel.ws.binaryType;\n",
       "    ws.readyState = comm.kernel.ws.readyState;\n",
       "    function updateReadyState(_event) {\n",
       "        if (comm.kernel.ws) {\n",
       "            ws.readyState = comm.kernel.ws.readyState;\n",
       "        } else {\n",
       "            ws.readyState = 3; // Closed state.\n",
       "        }\n",
       "    }\n",
       "    comm.kernel.ws.addEventListener('open', updateReadyState);\n",
       "    comm.kernel.ws.addEventListener('close', updateReadyState);\n",
       "    comm.kernel.ws.addEventListener('error', updateReadyState);\n",
       "\n",
       "    ws.close = function () {\n",
       "        comm.close();\n",
       "    };\n",
       "    ws.send = function (m) {\n",
       "        //console.log('sending', m);\n",
       "        comm.send(m);\n",
       "    };\n",
       "    // Register the callback with on_msg.\n",
       "    comm.on_msg(function (msg) {\n",
       "        //console.log('receiving', msg['content']['data'], msg);\n",
       "        var data = msg['content']['data'];\n",
       "        if (data['blob'] !== undefined) {\n",
       "            data = {\n",
       "                data: new Blob(msg['buffers'], { type: data['blob'] }),\n",
       "            };\n",
       "        }\n",
       "        // Pass the mpl event to the overridden (by mpl) onmessage function.\n",
       "        ws.onmessage(data);\n",
       "    });\n",
       "    return ws;\n",
       "};\n",
       "\n",
       "mpl.mpl_figure_comm = function (comm, msg) {\n",
       "    // This is the function which gets called when the mpl process\n",
       "    // starts-up an IPython Comm through the \"matplotlib\" channel.\n",
       "\n",
       "    var id = msg.content.data.id;\n",
       "    // Get hold of the div created by the display call when the Comm\n",
       "    // socket was opened in Python.\n",
       "    var element = document.getElementById(id);\n",
       "    var ws_proxy = comm_websocket_adapter(comm);\n",
       "\n",
       "    function ondownload(figure, _format) {\n",
       "        window.open(figure.canvas.toDataURL());\n",
       "    }\n",
       "\n",
       "    var fig = new mpl.figure(id, ws_proxy, ondownload, element);\n",
       "\n",
       "    // Call onopen now - mpl needs it, as it is assuming we've passed it a real\n",
       "    // web socket which is closed, not our websocket->open comm proxy.\n",
       "    ws_proxy.onopen();\n",
       "\n",
       "    fig.parent_element = element;\n",
       "    fig.cell_info = mpl.find_output_cell(\"<div id='\" + id + \"'></div>\");\n",
       "    if (!fig.cell_info) {\n",
       "        console.error('Failed to find cell for figure', id, fig);\n",
       "        return;\n",
       "    }\n",
       "    fig.cell_info[0].output_area.element.on(\n",
       "        'cleared',\n",
       "        { fig: fig },\n",
       "        fig._remove_fig_handler\n",
       "    );\n",
       "};\n",
       "\n",
       "mpl.figure.prototype.handle_close = function (fig, msg) {\n",
       "    var width = fig.canvas.width / fig.ratio;\n",
       "    fig.cell_info[0].output_area.element.off(\n",
       "        'cleared',\n",
       "        fig._remove_fig_handler\n",
       "    );\n",
       "    fig.resizeObserverInstance.unobserve(fig.canvas_div);\n",
       "\n",
       "    // Update the output cell to use the data from the current canvas.\n",
       "    fig.push_to_output();\n",
       "    var dataURL = fig.canvas.toDataURL();\n",
       "    // Re-enable the keyboard manager in IPython - without this line, in FF,\n",
       "    // the notebook keyboard shortcuts fail.\n",
       "    IPython.keyboard_manager.enable();\n",
       "    fig.parent_element.innerHTML =\n",
       "        '<img src=\"' + dataURL + '\" width=\"' + width + '\">';\n",
       "    fig.close_ws(fig, msg);\n",
       "};\n",
       "\n",
       "mpl.figure.prototype.close_ws = function (fig, msg) {\n",
       "    fig.send_message('closing', msg);\n",
       "    // fig.ws.close()\n",
       "};\n",
       "\n",
       "mpl.figure.prototype.push_to_output = function (_remove_interactive) {\n",
       "    // Turn the data on the canvas into data in the output cell.\n",
       "    var width = this.canvas.width / this.ratio;\n",
       "    var dataURL = this.canvas.toDataURL();\n",
       "    this.cell_info[1]['text/html'] =\n",
       "        '<img src=\"' + dataURL + '\" width=\"' + width + '\">';\n",
       "};\n",
       "\n",
       "mpl.figure.prototype.updated_canvas_event = function () {\n",
       "    // Tell IPython that the notebook contents must change.\n",
       "    IPython.notebook.set_dirty(true);\n",
       "    this.send_message('ack', {});\n",
       "    var fig = this;\n",
       "    // Wait a second, then push the new image to the DOM so\n",
       "    // that it is saved nicely (might be nice to debounce this).\n",
       "    setTimeout(function () {\n",
       "        fig.push_to_output();\n",
       "    }, 1000);\n",
       "};\n",
       "\n",
       "mpl.figure.prototype._init_toolbar = function () {\n",
       "    var fig = this;\n",
       "\n",
       "    var toolbar = document.createElement('div');\n",
       "    toolbar.classList = 'btn-toolbar';\n",
       "    this.root.appendChild(toolbar);\n",
       "\n",
       "    function on_click_closure(name) {\n",
       "        return function (_event) {\n",
       "            return fig.toolbar_button_onclick(name);\n",
       "        };\n",
       "    }\n",
       "\n",
       "    function on_mouseover_closure(tooltip) {\n",
       "        return function (event) {\n",
       "            if (!event.currentTarget.disabled) {\n",
       "                return fig.toolbar_button_onmouseover(tooltip);\n",
       "            }\n",
       "        };\n",
       "    }\n",
       "\n",
       "    fig.buttons = {};\n",
       "    var buttonGroup = document.createElement('div');\n",
       "    buttonGroup.classList = 'btn-group';\n",
       "    var button;\n",
       "    for (var toolbar_ind in mpl.toolbar_items) {\n",
       "        var name = mpl.toolbar_items[toolbar_ind][0];\n",
       "        var tooltip = mpl.toolbar_items[toolbar_ind][1];\n",
       "        var image = mpl.toolbar_items[toolbar_ind][2];\n",
       "        var method_name = mpl.toolbar_items[toolbar_ind][3];\n",
       "\n",
       "        if (!name) {\n",
       "            /* Instead of a spacer, we start a new button group. */\n",
       "            if (buttonGroup.hasChildNodes()) {\n",
       "                toolbar.appendChild(buttonGroup);\n",
       "            }\n",
       "            buttonGroup = document.createElement('div');\n",
       "            buttonGroup.classList = 'btn-group';\n",
       "            continue;\n",
       "        }\n",
       "\n",
       "        button = fig.buttons[name] = document.createElement('button');\n",
       "        button.classList = 'btn btn-default';\n",
       "        button.href = '#';\n",
       "        button.title = name;\n",
       "        button.innerHTML = '<i class=\"fa ' + image + ' fa-lg\"></i>';\n",
       "        button.addEventListener('click', on_click_closure(method_name));\n",
       "        button.addEventListener('mouseover', on_mouseover_closure(tooltip));\n",
       "        buttonGroup.appendChild(button);\n",
       "    }\n",
       "\n",
       "    if (buttonGroup.hasChildNodes()) {\n",
       "        toolbar.appendChild(buttonGroup);\n",
       "    }\n",
       "\n",
       "    // Add the status bar.\n",
       "    var status_bar = document.createElement('span');\n",
       "    status_bar.classList = 'mpl-message pull-right';\n",
       "    toolbar.appendChild(status_bar);\n",
       "    this.message = status_bar;\n",
       "\n",
       "    // Add the close button to the window.\n",
       "    var buttongrp = document.createElement('div');\n",
       "    buttongrp.classList = 'btn-group inline pull-right';\n",
       "    button = document.createElement('button');\n",
       "    button.classList = 'btn btn-mini btn-primary';\n",
       "    button.href = '#';\n",
       "    button.title = 'Stop Interaction';\n",
       "    button.innerHTML = '<i class=\"fa fa-power-off icon-remove icon-large\"></i>';\n",
       "    button.addEventListener('click', function (_evt) {\n",
       "        fig.handle_close(fig, {});\n",
       "    });\n",
       "    button.addEventListener(\n",
       "        'mouseover',\n",
       "        on_mouseover_closure('Stop Interaction')\n",
       "    );\n",
       "    buttongrp.appendChild(button);\n",
       "    var titlebar = this.root.querySelector('.ui-dialog-titlebar');\n",
       "    titlebar.insertBefore(buttongrp, titlebar.firstChild);\n",
       "};\n",
       "\n",
       "mpl.figure.prototype._remove_fig_handler = function (event) {\n",
       "    var fig = event.data.fig;\n",
       "    if (event.target !== this) {\n",
       "        // Ignore bubbled events from children.\n",
       "        return;\n",
       "    }\n",
       "    fig.close_ws(fig, {});\n",
       "};\n",
       "\n",
       "mpl.figure.prototype._root_extra_style = function (el) {\n",
       "    el.style.boxSizing = 'content-box'; // override notebook setting of border-box.\n",
       "};\n",
       "\n",
       "mpl.figure.prototype._canvas_extra_style = function (el) {\n",
       "    // this is important to make the div 'focusable\n",
       "    el.setAttribute('tabindex', 0);\n",
       "    // reach out to IPython and tell the keyboard manager to turn it's self\n",
       "    // off when our div gets focus\n",
       "\n",
       "    // location in version 3\n",
       "    if (IPython.notebook.keyboard_manager) {\n",
       "        IPython.notebook.keyboard_manager.register_events(el);\n",
       "    } else {\n",
       "        // location in version 2\n",
       "        IPython.keyboard_manager.register_events(el);\n",
       "    }\n",
       "};\n",
       "\n",
       "mpl.figure.prototype._key_event_extra = function (event, _name) {\n",
       "    // Check for shift+enter\n",
       "    if (event.shiftKey && event.which === 13) {\n",
       "        this.canvas_div.blur();\n",
       "        // select the cell after this one\n",
       "        var index = IPython.notebook.find_cell_index(this.cell_info[0]);\n",
       "        IPython.notebook.select(index + 1);\n",
       "    }\n",
       "};\n",
       "\n",
       "mpl.figure.prototype.handle_save = function (fig, _msg) {\n",
       "    fig.ondownload(fig, null);\n",
       "};\n",
       "\n",
       "mpl.find_output_cell = function (html_output) {\n",
       "    // Return the cell and output element which can be found *uniquely* in the notebook.\n",
       "    // Note - this is a bit hacky, but it is done because the \"notebook_saving.Notebook\"\n",
       "    // IPython event is triggered only after the cells have been serialised, which for\n",
       "    // our purposes (turning an active figure into a static one), is too late.\n",
       "    var cells = IPython.notebook.get_cells();\n",
       "    var ncells = cells.length;\n",
       "    for (var i = 0; i < ncells; i++) {\n",
       "        var cell = cells[i];\n",
       "        if (cell.cell_type === 'code') {\n",
       "            for (var j = 0; j < cell.output_area.outputs.length; j++) {\n",
       "                var data = cell.output_area.outputs[j];\n",
       "                if (data.data) {\n",
       "                    // IPython >= 3 moved mimebundle to data attribute of output\n",
       "                    data = data.data;\n",
       "                }\n",
       "                if (data['text/html'] === html_output) {\n",
       "                    return [cell, data, j];\n",
       "                }\n",
       "            }\n",
       "        }\n",
       "    }\n",
       "};\n",
       "\n",
       "// Register the function which deals with the matplotlib target/channel.\n",
       "// The kernel may be null if the page has been refreshed.\n",
       "if (IPython.notebook.kernel !== null) {\n",
       "    IPython.notebook.kernel.comm_manager.register_target(\n",
       "        'matplotlib',\n",
       "        mpl.mpl_figure_comm\n",
       "    );\n",
       "}\n"
      ],
      "text/plain": [
       "<IPython.core.display.Javascript object>"
      ]
     },
     "metadata": {},
     "output_type": "display_data"
    },
    {
     "data": {
      "text/html": [
       "<img src=\"data:image/png;base64,[encoded data, 257996 characters]\" width=\"640\">"
      ],
      "text/plain": [
       "<IPython.core.display.HTML object>"
      ]
     },
     "metadata": {},
     "output_type": "display_data"
    }
   ],
   "source": [
    "fig, axs = plt.subplots(nrows=2, figsize=[6.4, 4.8 * 2], sharex=True)\n",
    "axs[0].set_title(r\"$\\mathrm{{hw}} = {}$\".format(hw))\n",
    "m = autoks < 22\n",
    "mu = np.mean(pks, axis=0)\n",
    "for i in range(len(paths.get_ics)):\n",
    "    axs[0].plot(autoks[m], pks[i, m], c=\"k\", lw=0.1)\n",
    "    axs[1].plot(autoks[m], pks[i, m] / mu[m], c=\"k\", lw=0.1)\n",
    "axs[0].plot(autoks[m], mu[m], c=\"red\", lw=1, label=r\"$\\langle P(k) \\rangle$\")\n",
    "    \n",
    "\n",
    "\n",
    "axs[1].set_xlabel(r\"$k~\\left[h / \\mathrm{Mpc}\\right]$\")\n",
    "axs[0].set_ylabel(r\"$P(k)~\\left[(\\mathrm{Mpc} / h)^3 \\right]$\")\n",
    "axs[1].set_ylabel(r\"$P(k) / \\langle P(k) \\rangle $\")\n",
    "for i in range(2):\n",
    "    axs[i].set_xscale(\"log\")\n",
    "    axs[i].axvline(1 / 2.65, c=\"green\", ls=\"--\", label=r\"$1 / 2.65~\\left[h / \\mathrm{Mpc}\\right]$\")\n",
    "axs[0].set_yscale(\"log\")\n",
    "axs[0].legend()\n",
    "plt.tight_layout()\n",
    "fig.savefig(\"../plots/auto_{}.png\".format(hw))\n",
    "plt.show()"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 20,
   "id": "ad318bcf",
   "metadata": {
    "ExecuteTime": {
     "end_time": "2022-12-12T14:39:07.035651Z",
     "start_time": "2022-12-12T14:39:05.903061Z"
    }
   },
   "outputs": [
    {
     "data": {
      "application/javascript": [
       "/* Put everything inside the global mpl namespace */\n",
       "/* global mpl */\n",
       "window.mpl = {};\n",
       "\n",
       "mpl.get_websocket_type = function () {\n",
       "    if (typeof WebSocket !== 'undefined') {\n",
       "        return WebSocket;\n",
       "    } else if (typeof MozWebSocket !== 'undefined') {\n",
       "        return MozWebSocket;\n",
       "    } else {\n",
       "        alert(\n",
       "            'Your browser does not have WebSocket support. ' +\n",
       "                'Please try Chrome, Safari or Firefox ≥ 6. ' +\n",
       "                'Firefox 4 and 5 are also supported but you ' +\n",
       "                'have to enable WebSockets in about:config.'\n",
       "        );\n",
       "    }\n",
       "};\n",
       "\n",
       "mpl.figure = function (figure_id, websocket, ondownload, parent_element) {\n",
       "    this.id = figure_id;\n",
       "\n",
       "    this.ws = websocket;\n",
       "\n",
       "    this.supports_binary = this.ws.binaryType !== undefined;\n",
       "\n",
       "    if (!this.supports_binary) {\n",
       "        var warnings = document.getElementById('mpl-warnings');\n",
       "        if (warnings) {\n",
       "            warnings.style.display = 'block';\n",
       "            warnings.textContent =\n",
       "                'This browser does not support binary websocket messages. ' +\n",
       "                'Performance may be slow.';\n",
       "        }\n",
       "    }\n",
       "\n",
       "    this.imageObj = new Image();\n",
       "\n",
       "    this.context = undefined;\n",
       "    this.message = undefined;\n",
       "    this.canvas = undefined;\n",
       "    this.rubberband_canvas = undefined;\n",
       "    this.rubberband_context = undefined;\n",
       "    this.format_dropdown = undefined;\n",
       "\n",
       "    this.image_mode = 'full';\n",
       "\n",
       "    this.root = document.createElement('div');\n",
       "    this.root.setAttribute('style', 'display: inline-block');\n",
       "    this._root_extra_style(this.root);\n",
       "\n",
       "    parent_element.appendChild(this.root);\n",
       "\n",
       "    this._init_header(this);\n",
       "    this._init_canvas(this);\n",
       "    this._init_toolbar(this);\n",
       "\n",
       "    var fig = this;\n",
       "\n",
       "    this.waiting = false;\n",
       "\n",
       "    this.ws.onopen = function () {\n",
       "        fig.send_message('supports_binary', { value: fig.supports_binary });\n",
       "        fig.send_message('send_image_mode', {});\n",
       "        if (fig.ratio !== 1) {\n",
       "            fig.send_message('set_device_pixel_ratio', {\n",
       "                device_pixel_ratio: fig.ratio,\n",
       "            });\n",
       "        }\n",
       "        fig.send_message('refresh', {});\n",
       "    };\n",
       "\n",
       "    this.imageObj.onload = function () {\n",
       "        if (fig.image_mode === 'full') {\n",
       "            // Full images could contain transparency (where diff images\n",
       "            // almost always do), so we need to clear the canvas so that\n",
       "            // there is no ghosting.\n",
       "            fig.context.clearRect(0, 0, fig.canvas.width, fig.canvas.height);\n",
       "        }\n",
       "        fig.context.drawImage(fig.imageObj, 0, 0);\n",
       "    };\n",
       "\n",
       "    this.imageObj.onunload = function () {\n",
       "        fig.ws.close();\n",
       "    };\n",
       "\n",
       "    this.ws.onmessage = this._make_on_message_function(this);\n",
       "\n",
       "    this.ondownload = ondownload;\n",
       "};\n",
       "\n",
       "mpl.figure.prototype._init_header = function () {\n",
       "    var titlebar = document.createElement('div');\n",
       "    titlebar.classList =\n",
       "        'ui-dialog-titlebar ui-widget-header ui-corner-all ui-helper-clearfix';\n",
       "    var titletext = document.createElement('div');\n",
       "    titletext.classList = 'ui-dialog-title';\n",
       "    titletext.setAttribute(\n",
       "        'style',\n",
       "        'width: 100%; text-align: center; padding: 3px;'\n",
       "    );\n",
       "    titlebar.appendChild(titletext);\n",
       "    this.root.appendChild(titlebar);\n",
       "    this.header = titletext;\n",
       "};\n",
       "\n",
       "mpl.figure.prototype._canvas_extra_style = function (_canvas_div) {};\n",
       "\n",
       "mpl.figure.prototype._root_extra_style = function (_canvas_div) {};\n",
       "\n",
       "mpl.figure.prototype._init_canvas = function () {\n",
       "    var fig = this;\n",
       "\n",
       "    var canvas_div = (this.canvas_div = document.createElement('div'));\n",
       "    canvas_div.setAttribute(\n",
       "        'style',\n",
       "        'border: 1px solid #ddd;' +\n",
       "            'box-sizing: content-box;' +\n",
       "            'clear: both;' +\n",
       "            'min-height: 1px;' +\n",
       "            'min-width: 1px;' +\n",
       "            'outline: 0;' +\n",
       "            'overflow: hidden;' +\n",
       "            'position: relative;' +\n",
       "            'resize: both;'\n",
       "    );\n",
       "\n",
       "    function on_keyboard_event_closure(name) {\n",
       "        return function (event) {\n",
       "            return fig.key_event(event, name);\n",
       "        };\n",
       "    }\n",
       "\n",
       "    canvas_div.addEventListener(\n",
       "        'keydown',\n",
       "        on_keyboard_event_closure('key_press')\n",
       "    );\n",
       "    canvas_div.addEventListener(\n",
       "        'keyup',\n",
       "        on_keyboard_event_closure('key_release')\n",
       "    );\n",
       "\n",
       "    this._canvas_extra_style(canvas_div);\n",
       "    this.root.appendChild(canvas_div);\n",
       "\n",
       "    var canvas = (this.canvas = document.createElement('canvas'));\n",
       "    canvas.classList.add('mpl-canvas');\n",
       "    canvas.setAttribute('style', 'box-sizing: content-box;');\n",
       "\n",
       "    this.context = canvas.getContext('2d');\n",
       "\n",
       "    var backingStore =\n",
       "        this.context.backingStorePixelRatio ||\n",
       "        this.context.webkitBackingStorePixelRatio ||\n",
       "        this.context.mozBackingStorePixelRatio ||\n",
       "        this.context.msBackingStorePixelRatio ||\n",
       "        this.context.oBackingStorePixelRatio ||\n",
       "        this.context.backingStorePixelRatio ||\n",
       "        1;\n",
       "\n",
       "    this.ratio = (window.devicePixelRatio || 1) / backingStore;\n",
       "\n",
       "    var rubberband_canvas = (this.rubberband_canvas = document.createElement(\n",
       "        'canvas'\n",
       "    ));\n",
       "    rubberband_canvas.setAttribute(\n",
       "        'style',\n",
       "        'box-sizing: content-box; position: absolute; left: 0; top: 0; z-index: 1;'\n",
       "    );\n",
       "\n",
       "    // Apply a ponyfill if ResizeObserver is not implemented by browser.\n",
       "    if (this.ResizeObserver === undefined) {\n",
       "        if (window.ResizeObserver !== undefined) {\n",
       "            this.ResizeObserver = window.ResizeObserver;\n",
       "        } else {\n",
       "            var obs = _JSXTOOLS_RESIZE_OBSERVER({});\n",
       "            this.ResizeObserver = obs.ResizeObserver;\n",
       "        }\n",
       "    }\n",
       "\n",
       "    this.resizeObserverInstance = new this.ResizeObserver(function (entries) {\n",
       "        var nentries = entries.length;\n",
       "        for (var i = 0; i < nentries; i++) {\n",
       "            var entry = entries[i];\n",
       "            var width, height;\n",
       "            if (entry.contentBoxSize) {\n",
       "                if (entry.contentBoxSize instanceof Array) {\n",
       "                    // Chrome 84 implements new version of spec.\n",
       "                    width = entry.contentBoxSize[0].inlineSize;\n",
       "                    height = entry.contentBoxSize[0].blockSize;\n",
       "                } else {\n",
       "                    // Firefox implements old version of spec.\n",
       "                    width = entry.contentBoxSize.inlineSize;\n",
       "                    height = entry.contentBoxSize.blockSize;\n",
       "                }\n",
       "            } else {\n",
       "                // Chrome <84 implements even older version of spec.\n",
       "                width = entry.contentRect.width;\n",
       "                height = entry.contentRect.height;\n",
       "            }\n",
       "\n",
       "            // Keep the size of the canvas and rubber band canvas in sync with\n",
       "            // the canvas container.\n",
       "            if (entry.devicePixelContentBoxSize) {\n",
       "                // Chrome 84 implements new version of spec.\n",
       "                canvas.setAttribute(\n",
       "                    'width',\n",
       "                    entry.devicePixelContentBoxSize[0].inlineSize\n",
       "                );\n",
       "                canvas.setAttribute(\n",
       "                    'height',\n",
       "                    entry.devicePixelContentBoxSize[0].blockSize\n",
       "                );\n",
       "            } else {\n",
       "                canvas.setAttribute('width', width * fig.ratio);\n",
       "                canvas.setAttribute('height', height * fig.ratio);\n",
       "            }\n",
       "            canvas.setAttribute(\n",
       "                'style',\n",
       "                'width: ' + width + 'px; height: ' + height + 'px;'\n",
       "            );\n",
       "\n",
       "            rubberband_canvas.setAttribute('width', width);\n",
       "            rubberband_canvas.setAttribute('height', height);\n",
       "\n",
       "            // And update the size in Python. We ignore the initial 0/0 size\n",
       "            // that occurs as the element is placed into the DOM, which should\n",
       "            // otherwise not happen due to the minimum size styling.\n",
       "            if (fig.ws.readyState == 1 && width != 0 && height != 0) {\n",
       "                fig.request_resize(width, height);\n",
       "            }\n",
       "        }\n",
       "    });\n",
       "    this.resizeObserverInstance.observe(canvas_div);\n",
       "\n",
       "    function on_mouse_event_closure(name) {\n",
       "        return function (event) {\n",
       "            return fig.mouse_event(event, name);\n",
       "        };\n",
       "    }\n",
       "\n",
       "    rubberband_canvas.addEventListener(\n",
       "        'mousedown',\n",
       "        on_mouse_event_closure('button_press')\n",
       "    );\n",
       "    rubberband_canvas.addEventListener(\n",
       "        'mouseup',\n",
       "        on_mouse_event_closure('button_release')\n",
       "    );\n",
       "    rubberband_canvas.addEventListener(\n",
       "        'dblclick',\n",
       "        on_mouse_event_closure('dblclick')\n",
       "    );\n",
       "    // Throttle sequential mouse events to 1 every 20ms.\n",
       "    rubberband_canvas.addEventListener(\n",
       "        'mousemove',\n",
       "        on_mouse_event_closure('motion_notify')\n",
       "    );\n",
       "\n",
       "    rubberband_canvas.addEventListener(\n",
       "        'mouseenter',\n",
       "        on_mouse_event_closure('figure_enter')\n",
       "    );\n",
       "    rubberband_canvas.addEventListener(\n",
       "        'mouseleave',\n",
       "        on_mouse_event_closure('figure_leave')\n",
       "    );\n",
       "\n",
       "    canvas_div.addEventListener('wheel', function (event) {\n",
       "        if (event.deltaY < 0) {\n",
       "            event.step = 1;\n",
       "        } else {\n",
       "            event.step = -1;\n",
       "        }\n",
       "        on_mouse_event_closure('scroll')(event);\n",
       "    });\n",
       "\n",
       "    canvas_div.appendChild(canvas);\n",
       "    canvas_div.appendChild(rubberband_canvas);\n",
       "\n",
       "    this.rubberband_context = rubberband_canvas.getContext('2d');\n",
       "    this.rubberband_context.strokeStyle = '#000000';\n",
       "\n",
       "    this._resize_canvas = function (width, height, forward) {\n",
       "        if (forward) {\n",
       "            canvas_div.style.width = width + 'px';\n",
       "            canvas_div.style.height = height + 'px';\n",
       "        }\n",
       "    };\n",
       "\n",
       "    // Disable right mouse context menu.\n",
       "    this.rubberband_canvas.addEventListener('contextmenu', function (_e) {\n",
       "        event.preventDefault();\n",
       "        return false;\n",
       "    });\n",
       "\n",
       "    function set_focus() {\n",
       "        canvas.focus();\n",
       "        canvas_div.focus();\n",
       "    }\n",
       "\n",
       "    window.setTimeout(set_focus, 100);\n",
       "};\n",
       "\n",
       "mpl.figure.prototype._init_toolbar = function () {\n",
       "    var fig = this;\n",
       "\n",
       "    var toolbar = document.createElement('div');\n",
       "    toolbar.classList = 'mpl-toolbar';\n",
       "    this.root.appendChild(toolbar);\n",
       "\n",
       "    function on_click_closure(name) {\n",
       "        return function (_event) {\n",
       "            return fig.toolbar_button_onclick(name);\n",
       "        };\n",
       "    }\n",
       "\n",
       "    function on_mouseover_closure(tooltip) {\n",
       "        return function (event) {\n",
       "            if (!event.currentTarget.disabled) {\n",
       "                return fig.toolbar_button_onmouseover(tooltip);\n",
       "            }\n",
       "        };\n",
       "    }\n",
       "\n",
       "    fig.buttons = {};\n",
       "    var buttonGroup = document.createElement('div');\n",
       "    buttonGroup.classList = 'mpl-button-group';\n",
       "    for (var toolbar_ind in mpl.toolbar_items) {\n",
       "        var name = mpl.toolbar_items[toolbar_ind][0];\n",
       "        var tooltip = mpl.toolbar_items[toolbar_ind][1];\n",
       "        var image = mpl.toolbar_items[toolbar_ind][2];\n",
       "        var method_name = mpl.toolbar_items[toolbar_ind][3];\n",
       "\n",
       "        if (!name) {\n",
       "            /* Instead of a spacer, we start a new button group. */\n",
       "            if (buttonGroup.hasChildNodes()) {\n",
       "                toolbar.appendChild(buttonGroup);\n",
       "            }\n",
       "            buttonGroup = document.createElement('div');\n",
       "            buttonGroup.classList = 'mpl-button-group';\n",
       "            continue;\n",
       "        }\n",
       "\n",
       "        var button = (fig.buttons[name] = document.createElement('button'));\n",
       "        button.classList = 'mpl-widget';\n",
       "        button.setAttribute('role', 'button');\n",
       "        button.setAttribute('aria-disabled', 'false');\n",
       "        button.addEventListener('click', on_click_closure(method_name));\n",
       "        button.addEventListener('mouseover', on_mouseover_closure(tooltip));\n",
       "\n",
       "        var icon_img = document.createElement('img');\n",
       "        icon_img.src = '_images/' + image + '.png';\n",
       "        icon_img.srcset = '_images/' + image + '_large.png 2x';\n",
       "        icon_img.alt = tooltip;\n",
       "        button.appendChild(icon_img);\n",
       "\n",
       "        buttonGroup.appendChild(button);\n",
       "    }\n",
       "\n",
       "    if (buttonGroup.hasChildNodes()) {\n",
       "        toolbar.appendChild(buttonGroup);\n",
       "    }\n",
       "\n",
       "    var fmt_picker = document.createElement('select');\n",
       "    fmt_picker.classList = 'mpl-widget';\n",
       "    toolbar.appendChild(fmt_picker);\n",
       "    this.format_dropdown = fmt_picker;\n",
       "\n",
       "    for (var ind in mpl.extensions) {\n",
       "        var fmt = mpl.extensions[ind];\n",
       "        var option = document.createElement('option');\n",
       "        option.selected = fmt === mpl.default_extension;\n",
       "        option.innerHTML = fmt;\n",
       "        fmt_picker.appendChild(option);\n",
       "    }\n",
       "\n",
       "    var status_bar = document.createElement('span');\n",
       "    status_bar.classList = 'mpl-message';\n",
       "    toolbar.appendChild(status_bar);\n",
       "    this.message = status_bar;\n",
       "};\n",
       "\n",
       "mpl.figure.prototype.request_resize = function (x_pixels, y_pixels) {\n",
       "    // Request matplotlib to resize the figure. Matplotlib will then trigger a resize in the client,\n",
       "    // which will in turn request a refresh of the image.\n",
       "    this.send_message('resize', { width: x_pixels, height: y_pixels });\n",
       "};\n",
       "\n",
       "mpl.figure.prototype.send_message = function (type, properties) {\n",
       "    properties['type'] = type;\n",
       "    properties['figure_id'] = this.id;\n",
       "    this.ws.send(JSON.stringify(properties));\n",
       "};\n",
       "\n",
       "mpl.figure.prototype.send_draw_message = function () {\n",
       "    if (!this.waiting) {\n",
       "        this.waiting = true;\n",
       "        this.ws.send(JSON.stringify({ type: 'draw', figure_id: this.id }));\n",
       "    }\n",
       "};\n",
       "\n",
       "mpl.figure.prototype.handle_save = function (fig, _msg) {\n",
       "    var format_dropdown = fig.format_dropdown;\n",
       "    var format = format_dropdown.options[format_dropdown.selectedIndex].value;\n",
       "    fig.ondownload(fig, format);\n",
       "};\n",
       "\n",
       "mpl.figure.prototype.handle_resize = function (fig, msg) {\n",
       "    var size = msg['size'];\n",
       "    if (size[0] !== fig.canvas.width || size[1] !== fig.canvas.height) {\n",
       "        fig._resize_canvas(size[0], size[1], msg['forward']);\n",
       "        fig.send_message('refresh', {});\n",
       "    }\n",
       "};\n",
       "\n",
       "mpl.figure.prototype.handle_rubberband = function (fig, msg) {\n",
       "    var x0 = msg['x0'] / fig.ratio;\n",
       "    var y0 = (fig.canvas.height - msg['y0']) / fig.ratio;\n",
       "    var x1 = msg['x1'] / fig.ratio;\n",
       "    var y1 = (fig.canvas.height - msg['y1']) / fig.ratio;\n",
       "    x0 = Math.floor(x0) + 0.5;\n",
       "    y0 = Math.floor(y0) + 0.5;\n",
       "    x1 = Math.floor(x1) + 0.5;\n",
       "    y1 = Math.floor(y1) + 0.5;\n",
       "    var min_x = Math.min(x0, x1);\n",
       "    var min_y = Math.min(y0, y1);\n",
       "    var width = Math.abs(x1 - x0);\n",
       "    var height = Math.abs(y1 - y0);\n",
       "\n",
       "    fig.rubberband_context.clearRect(\n",
       "        0,\n",
       "        0,\n",
       "        fig.canvas.width / fig.ratio,\n",
       "        fig.canvas.height / fig.ratio\n",
       "    );\n",
       "\n",
       "    fig.rubberband_context.strokeRect(min_x, min_y, width, height);\n",
       "};\n",
       "\n",
       "mpl.figure.prototype.handle_figure_label = function (fig, msg) {\n",
       "    // Updates the figure title.\n",
       "    fig.header.textContent = msg['label'];\n",
       "};\n",
       "\n",
       "mpl.figure.prototype.handle_cursor = function (fig, msg) {\n",
       "    fig.rubberband_canvas.style.cursor = msg['cursor'];\n",
       "};\n",
       "\n",
       "mpl.figure.prototype.handle_message = function (fig, msg) {\n",
       "    fig.message.textContent = msg['message'];\n",
       "};\n",
       "\n",
       "mpl.figure.prototype.handle_draw = function (fig, _msg) {\n",
       "    // Request the server to send over a new figure.\n",
       "    fig.send_draw_message();\n",
       "};\n",
       "\n",
       "mpl.figure.prototype.handle_image_mode = function (fig, msg) {\n",
       "    fig.image_mode = msg['mode'];\n",
       "};\n",
       "\n",
       "mpl.figure.prototype.handle_history_buttons = function (fig, msg) {\n",
       "    for (var key in msg) {\n",
       "        if (!(key in fig.buttons)) {\n",
       "            continue;\n",
       "        }\n",
       "        fig.buttons[key].disabled = !msg[key];\n",
       "        fig.buttons[key].setAttribute('aria-disabled', !msg[key]);\n",
       "    }\n",
       "};\n",
       "\n",
       "mpl.figure.prototype.handle_navigate_mode = function (fig, msg) {\n",
       "    if (msg['mode'] === 'PAN') {\n",
       "        fig.buttons['Pan'].classList.add('active');\n",
       "        fig.buttons['Zoom'].classList.remove('active');\n",
       "    } else if (msg['mode'] === 'ZOOM') {\n",
       "        fig.buttons['Pan'].classList.remove('active');\n",
       "        fig.buttons['Zoom'].classList.add('active');\n",
       "    } else {\n",
       "        fig.buttons['Pan'].classList.remove('active');\n",
       "        fig.buttons['Zoom'].classList.remove('active');\n",
       "    }\n",
       "};\n",
       "\n",
       "mpl.figure.prototype.updated_canvas_event = function () {\n",
       "    // Called whenever the canvas gets updated.\n",
       "    this.send_message('ack', {});\n",
       "};\n",
       "\n",
       "// A function to construct a web socket function for onmessage handling.\n",
       "// Called in the figure constructor.\n",
       "mpl.figure.prototype._make_on_message_function = function (fig) {\n",
       "    return function socket_on_message(evt) {\n",
       "        if (evt.data instanceof Blob) {\n",
       "            var img = evt.data;\n",
       "            if (img.type !== 'image/png') {\n",
       "                /* FIXME: We get \"Resource interpreted as Image but\n",
       "                 * transferred with MIME type text/plain:\" errors on\n",
       "                 * Chrome.  But how to set the MIME type?  It doesn't seem\n",
       "                 * to be part of the websocket stream */\n",
       "                img.type = 'image/png';\n",
       "            }\n",
       "\n",
       "            /* Free the memory for the previous frames */\n",
       "            if (fig.imageObj.src) {\n",
       "                (window.URL || window.webkitURL).revokeObjectURL(\n",
       "                    fig.imageObj.src\n",
       "                );\n",
       "            }\n",
       "\n",
       "            fig.imageObj.src = (window.URL || window.webkitURL).createObjectURL(\n",
       "                img\n",
       "            );\n",
       "            fig.updated_canvas_event();\n",
       "            fig.waiting = false;\n",
       "            return;\n",
       "        } else if (\n",
       "            typeof evt.data === 'string' &&\n",
       "            evt.data.slice(0, 21) === 'data:image/png;base64'\n",
       "        ) {\n",
       "            fig.imageObj.src = evt.data;\n",
       "            fig.updated_canvas_event();\n",
       "            fig.waiting = false;\n",
       "            return;\n",
       "        }\n",
       "\n",
       "        var msg = JSON.parse(evt.data);\n",
       "        var msg_type = msg['type'];\n",
       "\n",
       "        // Call the  \"handle_{type}\" callback, which takes\n",
       "        // the figure and JSON message as its only arguments.\n",
       "        try {\n",
       "            var callback = fig['handle_' + msg_type];\n",
       "        } catch (e) {\n",
       "            console.log(\n",
       "                \"No handler for the '\" + msg_type + \"' message type: \",\n",
       "                msg\n",
       "            );\n",
       "            return;\n",
       "        }\n",
       "\n",
       "        if (callback) {\n",
       "            try {\n",
       "                // console.log(\"Handling '\" + msg_type + \"' message: \", msg);\n",
       "                callback(fig, msg);\n",
       "            } catch (e) {\n",
       "                console.log(\n",
       "                    \"Exception inside the 'handler_\" + msg_type + \"' callback:\",\n",
       "                    e,\n",
       "                    e.stack,\n",
       "                    msg\n",
       "                );\n",
       "            }\n",
       "        }\n",
       "    };\n",
       "};\n",
       "\n",
       "// from https://stackoverflow.com/questions/1114465/getting-mouse-location-in-canvas\n",
       "mpl.findpos = function (e) {\n",
       "    //this section is from http://www.quirksmode.org/js/events_properties.html\n",
       "    var targ;\n",
       "    if (!e) {\n",
       "        e = window.event;\n",
       "    }\n",
       "    if (e.target) {\n",
       "        targ = e.target;\n",
       "    } else if (e.srcElement) {\n",
       "        targ = e.srcElement;\n",
       "    }\n",
       "    if (targ.nodeType === 3) {\n",
       "        // defeat Safari bug\n",
       "        targ = targ.parentNode;\n",
       "    }\n",
       "\n",
       "    // pageX,Y are the mouse positions relative to the document\n",
       "    var boundingRect = targ.getBoundingClientRect();\n",
       "    var x = e.pageX - (boundingRect.left + document.body.scrollLeft);\n",
       "    var y = e.pageY - (boundingRect.top + document.body.scrollTop);\n",
       "\n",
       "    return { x: x, y: y };\n",
       "};\n",
       "\n",
       "/*\n",
       " * return a copy of an object with only non-object keys\n",
       " * we need this to avoid circular references\n",
       " * https://stackoverflow.com/a/24161582/3208463\n",
       " */\n",
       "function simpleKeys(original) {\n",
       "    return Object.keys(original).reduce(function (obj, key) {\n",
       "        if (typeof original[key] !== 'object') {\n",
       "            obj[key] = original[key];\n",
       "        }\n",
       "        return obj;\n",
       "    }, {});\n",
       "}\n",
       "\n",
       "mpl.figure.prototype.mouse_event = function (event, name) {\n",
       "    var canvas_pos = mpl.findpos(event);\n",
       "\n",
       "    if (name === 'button_press') {\n",
       "        this.canvas.focus();\n",
       "        this.canvas_div.focus();\n",
       "    }\n",
       "\n",
       "    var x = canvas_pos.x * this.ratio;\n",
       "    var y = canvas_pos.y * this.ratio;\n",
       "\n",
       "    this.send_message(name, {\n",
       "        x: x,\n",
       "        y: y,\n",
       "        button: event.button,\n",
       "        step: event.step,\n",
       "        guiEvent: simpleKeys(event),\n",
       "    });\n",
       "\n",
       "    /* This prevents the web browser from automatically changing to\n",
       "     * the text insertion cursor when the button is pressed.  We want\n",
       "     * to control all of the cursor setting manually through the\n",
       "     * 'cursor' event from matplotlib */\n",
       "    event.preventDefault();\n",
       "    return false;\n",
       "};\n",
       "\n",
       "mpl.figure.prototype._key_event_extra = function (_event, _name) {\n",
       "    // Handle any extra behaviour associated with a key event\n",
       "};\n",
       "\n",
       "mpl.figure.prototype.key_event = function (event, name) {\n",
       "    // Prevent repeat events\n",
       "    if (name === 'key_press') {\n",
       "        if (event.key === this._key) {\n",
       "            return;\n",
       "        } else {\n",
       "            this._key = event.key;\n",
       "        }\n",
       "    }\n",
       "    if (name === 'key_release') {\n",
       "        this._key = null;\n",
       "    }\n",
       "\n",
       "    var value = '';\n",
       "    if (event.ctrlKey && event.key !== 'Control') {\n",
       "        value += 'ctrl+';\n",
       "    }\n",
       "    else if (event.altKey && event.key !== 'Alt') {\n",
       "        value += 'alt+';\n",
       "    }\n",
       "    else if (event.shiftKey && event.key !== 'Shift') {\n",
       "        value += 'shift+';\n",
       "    }\n",
       "\n",
       "    value += 'k' + event.key;\n",
       "\n",
       "    this._key_event_extra(event, name);\n",
       "\n",
       "    this.send_message(name, { key: value, guiEvent: simpleKeys(event) });\n",
       "    return false;\n",
       "};\n",
       "\n",
       "mpl.figure.prototype.toolbar_button_onclick = function (name) {\n",
       "    if (name === 'download') {\n",
       "        this.handle_save(this, null);\n",
       "    } else {\n",
       "        this.send_message('toolbar_button', { name: name });\n",
       "    }\n",
       "};\n",
       "\n",
       "mpl.figure.prototype.toolbar_button_onmouseover = function (tooltip) {\n",
       "    this.message.textContent = tooltip;\n",
       "};\n",
       "\n",
       "///////////////// REMAINING CONTENT GENERATED BY embed_js.py /////////////////\n",
       "// prettier-ignore\n",
       "var _JSXTOOLS_RESIZE_OBSERVER=function(A){var t,i=new WeakMap,n=new WeakMap,a=new WeakMap,r=new WeakMap,o=new Set;function s(e){if(!(this instanceof s))throw new TypeError(\"Constructor requires 'new' operator\");i.set(this,e)}function h(){throw new TypeError(\"Function is not a constructor\")}function c(e,t,i,n){e=0 in arguments?Number(arguments[0]):0,t=1 in arguments?Number(arguments[1]):0,i=2 in arguments?Number(arguments[2]):0,n=3 in arguments?Number(arguments[3]):0,this.right=(this.x=this.left=e)+(this.width=i),this.bottom=(this.y=this.top=t)+(this.height=n),Object.freeze(this)}function d(){t=requestAnimationFrame(d);var s=new WeakMap,p=new Set;o.forEach((function(t){r.get(t).forEach((function(i){var r=t instanceof window.SVGElement,o=a.get(t),d=r?0:parseFloat(o.paddingTop),f=r?0:parseFloat(o.paddingRight),l=r?0:parseFloat(o.paddingBottom),u=r?0:parseFloat(o.paddingLeft),g=r?0:parseFloat(o.borderTopWidth),m=r?0:parseFloat(o.borderRightWidth),w=r?0:parseFloat(o.borderBottomWidth),b=u+f,F=d+l,v=(r?0:parseFloat(o.borderLeftWidth))+m,W=g+w,y=r?0:t.offsetHeight-W-t.clientHeight,E=r?0:t.offsetWidth-v-t.clientWidth,R=b+v,z=F+W,M=r?t.width:parseFloat(o.width)-R-E,O=r?t.height:parseFloat(o.height)-z-y;if(n.has(t)){var k=n.get(t);if(k[0]===M&&k[1]===O)return}n.set(t,[M,O]);var S=Object.create(h.prototype);S.target=t,S.contentRect=new c(u,d,M,O),s.has(i)||(s.set(i,[]),p.add(i)),s.get(i).push(S)}))})),p.forEach((function(e){i.get(e).call(e,s.get(e),e)}))}return s.prototype.observe=function(i){if(i instanceof window.Element){r.has(i)||(r.set(i,new Set),o.add(i),a.set(i,window.getComputedStyle(i)));var n=r.get(i);n.has(this)||n.add(this),cancelAnimationFrame(t),t=requestAnimationFrame(d)}},s.prototype.unobserve=function(i){if(i instanceof window.Element&&r.has(i)){var n=r.get(i);n.has(this)&&(n.delete(this),n.size||(r.delete(i),o.delete(i))),n.size||r.delete(i),o.size||cancelAnimationFrame(t)}},A.DOMRectReadOnly=c,A.ResizeObserver=s,A.ResizeObserverEntry=h,A}; // eslint-disable-line\n",
       "mpl.toolbar_items = [[\"Home\", \"Reset original view\", \"fa fa-home\", \"home\"], [\"Back\", \"Back to previous view\", \"fa fa-arrow-left\", \"back\"], [\"Forward\", \"Forward to next view\", \"fa fa-arrow-right\", \"forward\"], [\"\", \"\", \"\", \"\"], [\"Pan\", \"Left button pans, Right button zooms\\nx/y fixes axis, CTRL fixes aspect\", \"fa fa-arrows\", \"pan\"], [\"Zoom\", \"Zoom to rectangle\\nx/y fixes axis\", \"fa fa-square-o\", \"zoom\"], [\"\", \"\", \"\", \"\"], [\"Download\", \"Download plot\", \"fa fa-floppy-o\", \"download\"]];\n",
       "\n",
       "mpl.extensions = [\"eps\", \"jpeg\", \"pgf\", \"pdf\", \"png\", \"ps\", \"raw\", \"svg\", \"tif\", \"webp\"];\n",
       "\n",
       "mpl.default_extension = \"png\";/* global mpl */\n",
       "\n",
       "var comm_websocket_adapter = function (comm) {\n",
       "    // Create a \"websocket\"-like object which calls the given IPython comm\n",
       "    // object with the appropriate methods. Currently this is a non binary\n",
       "    // socket, so there is still some room for performance tuning.\n",
       "    var ws = {};\n",
       "\n",
       "    ws.binaryType = comm.kernel.ws.binaryType;\n",
       "    ws.readyState = comm.kernel.ws.readyState;\n",
       "    function updateReadyState(_event) {\n",
       "        if (comm.kernel.ws) {\n",
       "            ws.readyState = comm.kernel.ws.readyState;\n",
       "        } else {\n",
       "            ws.readyState = 3; // Closed state.\n",
       "        }\n",
       "    }\n",
       "    comm.kernel.ws.addEventListener('open', updateReadyState);\n",
       "    comm.kernel.ws.addEventListener('close', updateReadyState);\n",
       "    comm.kernel.ws.addEventListener('error', updateReadyState);\n",
       "\n",
       "    ws.close = function () {\n",
       "        comm.close();\n",
       "    };\n",
       "    ws.send = function (m) {\n",
       "        //console.log('sending', m);\n",
       "        comm.send(m);\n",
       "    };\n",
       "    // Register the callback with on_msg.\n",
       "    comm.on_msg(function (msg) {\n",
       "        //console.log('receiving', msg['content']['data'], msg);\n",
       "        var data = msg['content']['data'];\n",
       "        if (data['blob'] !== undefined) {\n",
       "            data = {\n",
       "                data: new Blob(msg['buffers'], { type: data['blob'] }),\n",
       "            };\n",
       "        }\n",
       "        // Pass the mpl event to the overridden (by mpl) onmessage function.\n",
       "        ws.onmessage(data);\n",
       "    });\n",
       "    return ws;\n",
       "};\n",
       "\n",
       "mpl.mpl_figure_comm = function (comm, msg) {\n",
       "    // This is the function which gets called when the mpl process\n",
       "    // starts-up an IPython Comm through the \"matplotlib\" channel.\n",
       "\n",
       "    var id = msg.content.data.id;\n",
       "    // Get hold of the div created by the display call when the Comm\n",
       "    // socket was opened in Python.\n",
       "    var element = document.getElementById(id);\n",
       "    var ws_proxy = comm_websocket_adapter(comm);\n",
       "\n",
       "    function ondownload(figure, _format) {\n",
       "        window.open(figure.canvas.toDataURL());\n",
       "    }\n",
       "\n",
       "    var fig = new mpl.figure(id, ws_proxy, ondownload, element);\n",
       "\n",
       "    // Call onopen now - mpl needs it, as it is assuming we've passed it a real\n",
       "    // web socket which is closed, not our websocket->open comm proxy.\n",
       "    ws_proxy.onopen();\n",
       "\n",
       "    fig.parent_element = element;\n",
       "    fig.cell_info = mpl.find_output_cell(\"<div id='\" + id + \"'></div>\");\n",
       "    if (!fig.cell_info) {\n",
       "        console.error('Failed to find cell for figure', id, fig);\n",
       "        return;\n",
       "    }\n",
       "    fig.cell_info[0].output_area.element.on(\n",
       "        'cleared',\n",
       "        { fig: fig },\n",
       "        fig._remove_fig_handler\n",
       "    );\n",
       "};\n",
       "\n",
       "mpl.figure.prototype.handle_close = function (fig, msg) {\n",
       "    var width = fig.canvas.width / fig.ratio;\n",
       "    fig.cell_info[0].output_area.element.off(\n",
       "        'cleared',\n",
       "        fig._remove_fig_handler\n",
       "    );\n",
       "    fig.resizeObserverInstance.unobserve(fig.canvas_div);\n",
       "\n",
       "    // Update the output cell to use the data from the current canvas.\n",
       "    fig.push_to_output();\n",
       "    var dataURL = fig.canvas.toDataURL();\n",
       "    // Re-enable the keyboard manager in IPython - without this line, in FF,\n",
       "    // the notebook keyboard shortcuts fail.\n",
       "    IPython.keyboard_manager.enable();\n",
       "    fig.parent_element.innerHTML =\n",
       "        '<img src=\"' + dataURL + '\" width=\"' + width + '\">';\n",
       "    fig.close_ws(fig, msg);\n",
       "};\n",
       "\n",
       "mpl.figure.prototype.close_ws = function (fig, msg) {\n",
       "    fig.send_message('closing', msg);\n",
       "    // fig.ws.close()\n",
       "};\n",
       "\n",
       "mpl.figure.prototype.push_to_output = function (_remove_interactive) {\n",
       "    // Turn the data on the canvas into data in the output cell.\n",
       "    var width = this.canvas.width / this.ratio;\n",
       "    var dataURL = this.canvas.toDataURL();\n",
       "    this.cell_info[1]['text/html'] =\n",
       "        '<img src=\"' + dataURL + '\" width=\"' + width + '\">';\n",
       "};\n",
       "\n",
       "mpl.figure.prototype.updated_canvas_event = function () {\n",
       "    // Tell IPython that the notebook contents must change.\n",
       "    IPython.notebook.set_dirty(true);\n",
       "    this.send_message('ack', {});\n",
       "    var fig = this;\n",
       "    // Wait a second, then push the new image to the DOM so\n",
       "    // that it is saved nicely (might be nice to debounce this).\n",
       "    setTimeout(function () {\n",
       "        fig.push_to_output();\n",
       "    }, 1000);\n",
       "};\n",
       "\n",
       "mpl.figure.prototype._init_toolbar = function () {\n",
       "    var fig = this;\n",
       "\n",
       "    var toolbar = document.createElement('div');\n",
       "    toolbar.classList = 'btn-toolbar';\n",
       "    this.root.appendChild(toolbar);\n",
       "\n",
       "    function on_click_closure(name) {\n",
       "        return function (_event) {\n",
       "            return fig.toolbar_button_onclick(name);\n",
       "        };\n",
       "    }\n",
       "\n",
       "    function on_mouseover_closure(tooltip) {\n",
       "        return function (event) {\n",
       "            if (!event.currentTarget.disabled) {\n",
       "                return fig.toolbar_button_onmouseover(tooltip);\n",
       "            }\n",
       "        };\n",
       "    }\n",
       "\n",
       "    fig.buttons = {};\n",
       "    var buttonGroup = document.createElement('div');\n",
       "    buttonGroup.classList = 'btn-group';\n",
       "    var button;\n",
       "    for (var toolbar_ind in mpl.toolbar_items) {\n",
       "        var name = mpl.toolbar_items[toolbar_ind][0];\n",
       "        var tooltip = mpl.toolbar_items[toolbar_ind][1];\n",
       "        var image = mpl.toolbar_items[toolbar_ind][2];\n",
       "        var method_name = mpl.toolbar_items[toolbar_ind][3];\n",
       "\n",
       "        if (!name) {\n",
       "            /* Instead of a spacer, we start a new button group. */\n",
       "            if (buttonGroup.hasChildNodes()) {\n",
       "                toolbar.appendChild(buttonGroup);\n",
       "            }\n",
       "            buttonGroup = document.createElement('div');\n",
       "            buttonGroup.classList = 'btn-group';\n",
       "            continue;\n",
       "        }\n",
       "\n",
       "        button = fig.buttons[name] = document.createElement('button');\n",
       "        button.classList = 'btn btn-default';\n",
       "        button.href = '#';\n",
       "        button.title = name;\n",
       "        button.innerHTML = '<i class=\"fa ' + image + ' fa-lg\"></i>';\n",
       "        button.addEventListener('click', on_click_closure(method_name));\n",
       "        button.addEventListener('mouseover', on_mouseover_closure(tooltip));\n",
       "        buttonGroup.appendChild(button);\n",
       "    }\n",
       "\n",
       "    if (buttonGroup.hasChildNodes()) {\n",
       "        toolbar.appendChild(buttonGroup);\n",
       "    }\n",
       "\n",
       "    // Add the status bar.\n",
       "    var status_bar = document.createElement('span');\n",
       "    status_bar.classList = 'mpl-message pull-right';\n",
       "    toolbar.appendChild(status_bar);\n",
       "    this.message = status_bar;\n",
       "\n",
       "    // Add the close button to the window.\n",
       "    var buttongrp = document.createElement('div');\n",
       "    buttongrp.classList = 'btn-group inline pull-right';\n",
       "    button = document.createElement('button');\n",
       "    button.classList = 'btn btn-mini btn-primary';\n",
       "    button.href = '#';\n",
       "    button.title = 'Stop Interaction';\n",
       "    button.innerHTML = '<i class=\"fa fa-power-off icon-remove icon-large\"></i>';\n",
       "    button.addEventListener('click', function (_evt) {\n",
       "        fig.handle_close(fig, {});\n",
       "    });\n",
       "    button.addEventListener(\n",
       "        'mouseover',\n",
       "        on_mouseover_closure('Stop Interaction')\n",
       "    );\n",
       "    buttongrp.appendChild(button);\n",
       "    var titlebar = this.root.querySelector('.ui-dialog-titlebar');\n",
       "    titlebar.insertBefore(buttongrp, titlebar.firstChild);\n",
       "};\n",
       "\n",
       "mpl.figure.prototype._remove_fig_handler = function (event) {\n",
       "    var fig = event.data.fig;\n",
       "    if (event.target !== this) {\n",
       "        // Ignore bubbled events from children.\n",
       "        return;\n",
       "    }\n",
       "    fig.close_ws(fig, {});\n",
       "};\n",
       "\n",
       "mpl.figure.prototype._root_extra_style = function (el) {\n",
       "    el.style.boxSizing = 'content-box'; // override notebook setting of border-box.\n",
       "};\n",
       "\n",
       "mpl.figure.prototype._canvas_extra_style = function (el) {\n",
       "    // this is important to make the div 'focusable\n",
       "    el.setAttribute('tabindex', 0);\n",
       "    // reach out to IPython and tell the keyboard manager to turn it's self\n",
       "    // off when our div gets focus\n",
       "\n",
       "    // location in version 3\n",
       "    if (IPython.notebook.keyboard_manager) {\n",
       "        IPython.notebook.keyboard_manager.register_events(el);\n",
       "    } else {\n",
       "        // location in version 2\n",
       "        IPython.keyboard_manager.register_events(el);\n",
       "    }\n",
       "};\n",
       "\n",
       "mpl.figure.prototype._key_event_extra = function (event, _name) {\n",
       "    // Check for shift+enter\n",
       "    if (event.shiftKey && event.which === 13) {\n",
       "        this.canvas_div.blur();\n",
       "        // select the cell after this one\n",
       "        var index = IPython.notebook.find_cell_index(this.cell_info[0]);\n",
       "        IPython.notebook.select(index + 1);\n",
       "    }\n",
       "};\n",
       "\n",
       "mpl.figure.prototype.handle_save = function (fig, _msg) {\n",
       "    fig.ondownload(fig, null);\n",
       "};\n",
       "\n",
       "mpl.find_output_cell = function (html_output) {\n",
       "    // Return the cell and output element which can be found *uniquely* in the notebook.\n",
       "    // Note - this is a bit hacky, but it is done because the \"notebook_saving.Notebook\"\n",
       "    // IPython event is triggered only after the cells have been serialised, which for\n",
       "    // our purposes (turning an active figure into a static one), is too late.\n",
       "    var cells = IPython.notebook.get_cells();\n",
       "    var ncells = cells.length;\n",
       "    for (var i = 0; i < ncells; i++) {\n",
       "        var cell = cells[i];\n",
       "        if (cell.cell_type === 'code') {\n",
       "            for (var j = 0; j < cell.output_area.outputs.length; j++) {\n",
       "                var data = cell.output_area.outputs[j];\n",
       "                if (data.data) {\n",
       "                    // IPython >= 3 moved mimebundle to data attribute of output\n",
       "                    data = data.data;\n",
       "                }\n",
       "                if (data['text/html'] === html_output) {\n",
       "                    return [cell, data, j];\n",
       "                }\n",
       "            }\n",
       "        }\n",
       "    }\n",
       "};\n",
       "\n",
       "// Register the function which deals with the matplotlib target/channel.\n",
       "// The kernel may be null if the page has been refreshed.\n",
       "if (IPython.notebook.kernel !== null) {\n",
       "    IPython.notebook.kernel.comm_manager.register_target(\n",
       "        'matplotlib',\n",
       "        mpl.mpl_figure_comm\n",
       "    );\n",
       "}\n"
      ],
      "text/plain": [
       "<IPython.core.display.Javascript object>"
      ]
     },
     "metadata": {},
     "output_type": "display_data"
    },
    {
     "data": {
      "text/html": [
       "<img src=\"data:image/png;base64,[encoded data, 166024 characters]\" width=\"640\">"
      ],
      "text/plain": [
       "<IPython.core.display.HTML object>"
      ]
     },
     "metadata": {},
     "output_type": "display_data"
    }
   ],
   "source": [
    "cols = plt.rcParams['axes.prop_cycle'].by_key()['color']\n",
    "\n",
    "m = crossks < 2.5\n",
    "fig, axs = plt.subplots(nrows=2, figsize=[6.4, 4.8 * 2], sharex=True)\n",
    "axs[0].set_title(r\"$\\mathrm{{hw}} = {}$\".format(hw))\n",
    "for i in range(101):\n",
    "    mu = np.mean(xpks[i, :, m], axis=1)\n",
    "    std = np.std(xpks[i, :, m], axis=1)\n",
    "    axs[0].plot(crossks[m], mu, c=\"k\", lw=0.1)    \n",
    "    axs[1].plot(crossks[m], std / mu, c=\"k\", lw=0.1)\n",
    "\n",
    "\n",
    "for i in range(2):\n",
    "    axs[i].set_xscale(\"log\")\n",
    "    axs[i].axvline(1 / 2.65, c=\"green\", ls=\"--\", label=r\"$1 / 2.65~\\left[h / \\mathrm{Mpc}\\right]$\",\n",
    "                   zorder=0)\n",
    "axs[0].set_yscale(\"log\")\n",
    "axs[1].set_yscale(\"log\")\n",
    "\n",
    "axs[1].set_xlabel(r\"$k~\\left[h / \\mathrm{Mpc}\\right]$\")\n",
    "axs[0].set_ylabel(r\"$\\langle P_X(k) \\rangle ~\\left[(\\mathrm{Mpc} / h)^3 \\right]$\")\n",
    "axs[1].set_ylabel(r\"$\\Delta P_X(k) / \\langle P_X(k) \\rangle$\")\n",
    "\n",
    "axs[0].legend()\n",
    "plt.tight_layout()\n",
    "fig.savefig(\"../plots/cross_{}.png\".format(hw))\n",
    "fig.show()"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "7b808b22",
   "metadata": {},
   "outputs": [],
   "source": []
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "a3aeefa7",
   "metadata": {},
   "outputs": [],
   "source": []
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "e48a069b",
   "metadata": {},
   "outputs": [],
   "source": []
  },
  {
   "cell_type": "markdown",
   "id": "f8d67624",
   "metadata": {},
   "source": [
    "# Auto-correlation"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "a5914ddc",
   "metadata": {
    "ExecuteTime": {
     "end_time": "2022-12-12T06:41:18.928217Z",
     "start_time": "2022-12-12T06:41:12.811514Z"
    }
   },
   "outputs": [],
   "source": [
    "fskel = \"/mnt/extraspace/rstiskalek/csiborg/crosspk/out_{}_{}_{}.p\"\n",
    "\n",
    "autoks, autopks = None, None\n",
    "for i, nsim in enumerate(paths.get_ics):\n",
    "    pk = joblib.load(fskel.format(nsim, nsim, hw))\n",
    "    x = pk.k3D\n",
    "    y = pk.Pk[:, 0, 0]\n",
    "    sel = x < 20\n",
    "    if i == 0:\n",
    "        autoks = np.full((len(paths.get_ics), np.sum(sel)), np.nan)\n",
    "        autopks = np.full_like(autoks, np.nan)\n",
    "    \n",
    "    autoks[i, :] = x[sel]\n",
    "    autopks[i, :] = y[sel]        "
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "6c10879f",
   "metadata": {
    "ExecuteTime": {
     "end_time": "2022-12-12T06:41:19.818954Z",
     "start_time": "2022-12-12T06:41:18.947746Z"
    }
   },
   "outputs": [],
   "source": [
    "plt.figure()\n",
    "for i in range(len(paths.get_ics)):\n",
    "    plt.plot(autoks[i, :], autopks[i, :], c=\"k\", lw=0.1)\n",
    "plt.plot(np.mean(autoks, axis=0), np.mean(autopks, axis=0), label=\"CSiBORG\", c=\"k\", lw=1)\n",
    "    \n",
    "m = (darkskyps[:, 0] > 0.01) & (darkskyps[:, 0] < 20) \n",
    "plt.plot(darkskyps[m, 0], darkskyps[m, 1], label=r\"Darksky 2014\")\n",
    "\n",
    "plt.axvline(1 / 4, c=\"red\", ls=\"--\", label=r\"$1/4~ h / \\mathrm{Mpc}$\")\n",
    "\n",
    "plt.legend()\n",
    "plt.xlabel(r\"$k~\\left[h / \\mathrm{Mpc}\\right]$\")\n",
    "plt.ylabel(r\"$P(k) ~ \\left[(\\mathrm{Mpc} / h)^3 \\right]$\")\n",
    "plt.yscale(\"log\")\n",
    "plt.xscale(\"log\")\n",
    "plt.savefig(\"../plots/autocorr.png\", dpi=450)\n",
    "plt.show()"
   ]
  },
  {
   "cell_type": "markdown",
   "id": "9666d784",
   "metadata": {},
   "source": [
    "# Cross-correlation"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "76f8727b",
   "metadata": {
    "ExecuteTime": {
     "end_time": "2022-12-12T06:42:09.462226Z",
     "start_time": "2022-12-12T06:42:02.929796Z"
    }
   },
   "outputs": [],
   "source": [
    "fskel = \"/mnt/extraspace/rstiskalek/csiborg/crosspk/out_{}_{}_{}.p\"\n",
    "\n",
    "ic0 = paths.get_ics[25]\n",
    "crossks, crosspks = None, None\n",
    "i = 0\n",
    "for ic in paths.get_ics:\n",
    "    if ic == ic0:\n",
    "        continue\n",
    "    ics = (ic0, ic)\n",
    "    if ic0 > ic:\n",
    "        ics = ics[::-1]\n",
    "        \n",
    "    pk = joblib.load(fskel.format(*ics, hw))\n",
    "    x = pk.k3D\n",
    "    y = pk.XPk[:, 0, 0]\n",
    "    sel = x < 2\n",
    "    if i == 0:\n",
    "        crossks = np.full((100, np.sum(sel)), np.nan)\n",
    "        crosspks = np.full_like(crossks, np.nan)\n",
    "    \n",
    "    crossks[i, :] = x[sel]\n",
    "    crosspks[i, :] = y[sel]\n",
    "    \n",
    "    i += 1\n"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "3c1f2b68",
   "metadata": {
    "ExecuteTime": {
     "end_time": "2022-12-12T06:43:08.992298Z",
     "start_time": "2022-12-12T06:43:07.435263Z"
    }
   },
   "outputs": [],
   "source": [
    "plt.figure()\n",
    "for i in range(100):\n",
    "    plt.plot(crossks[i, :], crosspks[i, :], c=\"k\", lw=0.1)\n",
    "plt.axvline(1 / 2.65, c=\"red\", ls=\"--\")\n",
    "# plt.plot(autoks[25, :], autopks[25, :], c=\"red\", label=\"Autocorrelation\")\n",
    "plt.xlabel(r\"$k~\\left[h / \\mathrm{Mpc}\\right]$\")\n",
    "plt.ylabel(r\"$P(k) ~ \\left[(\\mathrm{Mpc} / h)^3 \\right]$\")\n",
    "plt.yscale(\"log\")\n",
    "plt.xscale(\"log\")\n",
    "plt.savefig(\"../plots/crosscorr.png\", dpi=450)\n",
    "plt.show()"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "c9924d81",
   "metadata": {},
   "outputs": [],
   "source": []
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "ecfdfaa6",
   "metadata": {},
   "outputs": [],
   "source": []
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "ef739cb8",
   "metadata": {},
   "outputs": [],
   "source": []
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "3f27d0cb",
   "metadata": {
    "ExecuteTime": {
     "end_time": "2022-12-09T10:33:41.822813Z",
     "start_time": "2022-12-09T10:33:39.722454Z"
    }
   },
   "outputs": [],
   "source": [
    "ic1 = 7444\n",
    "ic2 = 7516\n",
    "\n",
    "fpath = \"/mnt/extraspace/rstiskalek/csiborg/crosspk/out_{}_{}_{}.p\"\n",
    "darkskyps = np.genfromtxt(\"../plots/darksky.csv\", delimiter=\", \")"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "44dea453",
   "metadata": {
    "ExecuteTime": {
     "end_time": "2022-12-09T10:33:42.660633Z",
     "start_time": "2022-12-09T10:33:42.581737Z"
    }
   },
   "outputs": [],
   "source": [
    "pk = joblib.load(fpath.format(ic1, ic2, 0.2))"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "b55d31fb",
   "metadata": {
    "ExecuteTime": {
     "end_time": "2022-12-09T10:33:57.688467Z",
     "start_time": "2022-12-09T10:33:57.279521Z"
    }
   },
   "outputs": [],
   "source": [
    "plt.figure()\n",
    "\n",
    "plt.plot(pk.k3D, pk.Pk[:, 0, 0], label=\"CSiBORG\")\n",
    "plt.plot(pk.k3D, pk.XPk[:, 0, 0], label=\"CSiBORG cross\")\n",
    "# plt.plot(pk2.k3D / L, pk2.Pk[:, 0, 0] * L**3, label=\"CSiBORG1024\")\n",
    "\n",
    "\n",
    "# m = np.argsort(darkskyps[:, 0])\n",
    "# plt.plot(10**darkskyps[:, 0][m], 10**darkskyps[:, 1][m], label=r\"Darksky 2014\")\n",
    "\n",
    "\n",
    "plt.yscale(\"log\")\n",
    "plt.xscale(\"log\")\n",
    "\n",
    "plt.axvline(1 / 4, c=\"red\", ls=\"--\", label=r\"$1/4~ h / \\mathrm{Mpc}$\")\n",
    "\n",
    "plt.xlabel(r\"$k~\\left[h / \\mathrm{Mpc}\\right]$\")\n",
    "plt.ylabel(r\"$P(k) ~ \\left[(\\mathrm{Mpc} / h)^3 \\right]$\")\n",
    "\n",
    "plt.legend()\n",
    "plt.tight_layout()\n",
    "# plt.savefig(\"../plots/pk.png\", dpi=300)\n",
    "\n",
    "plt.show()"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "5f9f455e",
   "metadata": {},
   "outputs": [],
   "source": []
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "a6afb4ec",
   "metadata": {},
   "outputs": [],
   "source": []
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "eba72587",
   "metadata": {},
   "outputs": [],
   "source": []
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "0681e5fa",
   "metadata": {
    "ExecuteTime": {
     "end_time": "2022-12-08T10:57:43.973683Z",
     "start_time": "2022-12-08T10:57:43.939018Z"
    }
   },
   "outputs": [],
   "source": [
    "# dx = box.kpc2box(300e3) / 2\n",
    "dx = 0.5"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "70c32099",
   "metadata": {
    "ExecuteTime": {
     "end_time": "2022-12-08T10:54:31.983151Z",
     "start_time": "2022-12-08T10:54:22.216967Z"
    }
   },
   "outputs": [],
   "source": [
    "m = ((0.5 - dx < particles['x']) & (particles['x'] < 0.5 + dx)\n",
    "     & (0.5 - dx < particles['y']) & (particles['y'] < 0.5 + dx)\n",
    "     & (0.5 - dx < particles['z']) & (particles['z'] < 0.5 + dx))\n",
    "\n",
    "particles = particles[m]\n",
    "\n",
    "particles['x'] = (particles['x'] - 0.5 + dx) / (2*dx)\n",
    "particles['y'] = (particles['y'] - 0.5 + dx) / (2*dx)\n",
    "particles['z'] = (particles['z'] - 0.5 + dx) / (2*dx)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "b9dd0b2f",
   "metadata": {
    "ExecuteTime": {
     "end_time": "2022-12-08T10:57:28.777454Z",
     "start_time": "2022-12-08T10:57:19.288151Z"
    }
   },
   "outputs": [],
   "source": [
    "plt.figure()\n",
    "plt.hist(particles['y'], bins=20)\n",
    "\n",
    "plt.show()"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "d8337a31",
   "metadata": {
    "ExecuteTime": {
     "end_time": "2022-12-08T10:54:42.278682Z",
     "start_time": "2022-12-08T10:54:38.260894Z"
    }
   },
   "outputs": [],
   "source": [
    "particles['x'] = (particles['x'] - 0.5 + dx) / (2*dx)\n",
    "particles['y'] = (particles['y'] - 0.5 + dx) / (2*dx)\n",
    "particles['z'] = (particles['z'] - 0.5 + dx) / (2*dx)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "ed794588",
   "metadata": {
    "ExecuteTime": {
     "end_time": "2022-12-08T10:50:23.369788Z",
     "start_time": "2022-12-08T10:50:23.341933Z"
    }
   },
   "outputs": [],
   "source": [
    "# pk2 = joblib.load(\"/mnt/extraspace/rstiskalek/csiborg/crosspk/out_{}_{}.p\".format(ic, ic))"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "ada13c8c",
   "metadata": {
    "ExecuteTime": {
     "end_time": "2022-12-08T10:50:23.550864Z",
     "start_time": "2022-12-08T10:50:23.526471Z"
    }
   },
   "outputs": [],
   "source": [
    "# L = box.box2mpc(1)\n",
    "# particles[\"x\"] *= L\n",
    "# particles[\"y\"] *= L\n",
    "# particles[\"z\"] *= L"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "da58351f",
   "metadata": {
    "ExecuteTime": {
     "end_time": "2022-12-08T10:57:47.255586Z",
     "start_time": "2022-12-08T10:57:46.787382Z"
    }
   },
   "outputs": [],
   "source": [
    "field = csiborgtools.field.DensityField(particles, box.box2mpc(2*dx) * box.h, box)\n",
    "\n",
    "# field._boxsize = 1. # box.box2mpc(0.2) * box.h"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "00580b87",
   "metadata": {
    "ExecuteTime": {
     "end_time": "2022-12-08T10:59:31.152791Z",
     "start_time": "2022-12-08T10:57:47.463024Z"
    }
   },
   "outputs": [],
   "source": [
    "PK = field.auto_powerspectrum(1024)\n",
    "# PK = pk"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "86c0125b",
   "metadata": {
    "ExecuteTime": {
     "end_time": "2022-12-08T10:59:36.154185Z",
     "start_time": "2022-12-08T10:59:35.684092Z"
    }
   },
   "outputs": [],
   "source": [
    "borg_ps = np.genfromtxt(\"../plots/BORG_PS_Fig8.csv\", delimiter=\", \")\n",
    "darkskyps = np.genfromtxt(\"../plots/darksky.csv\", delimiter=\", \")"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "b3c3ab45",
   "metadata": {
    "ExecuteTime": {
     "end_time": "2022-12-08T10:59:36.761379Z",
     "start_time": "2022-12-08T10:59:36.242118Z"
    }
   },
   "outputs": [],
   "source": [
    "plt.figure()\n",
    "\n",
    "plt.plot(PK.k3D, PK.Pk[:, 0], label=\"CSiBORG\")\n",
    "# plt.plot(pk2.k3D / L, pk2.Pk[:, 0, 0] * L**3, label=\"CSiBORG1024\")\n",
    "\n",
    "\n",
    "# plt.plot(10**borg_ps[:, 0], 10**borg_ps[:, 1], label=r\"Jasche & Lavaux 2018 Fig. 8\")\n",
    "m = np.argsort(darkskyps[:, 0])\n",
    "plt.plot(10**darkskyps[:, 0][m], 10**darkskyps[:, 1][m], label=r\"Darksky 2014\")\n",
    "\n",
    "\n",
    "plt.yscale(\"log\")\n",
    "plt.xscale(\"log\")\n",
    "\n",
    "plt.axvline(1 / 4, c=\"red\", ls=\"--\", label=r\"$1/4~ h / \\mathrm{Mpc}$\")\n",
    "\n",
    "plt.xlabel(r\"$k~\\left[h / \\mathrm{Mpc}\\right]$\")\n",
    "plt.ylabel(r\"$P(k) ~ \\left[(\\mathrm{Mpc} / h)^3 \\right]$\")\n",
    "\n",
    "plt.legend()\n",
    "plt.tight_layout()\n",
    "# plt.savefig(\"../plots/pk.png\", dpi=300)\n",
    "\n",
    "plt.show()"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "d7fc8f18",
   "metadata": {},
   "outputs": [],
   "source": []
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "c4e6bf88",
   "metadata": {},
   "outputs": [],
   "source": []
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "caf05e70",
   "metadata": {
    "ExecuteTime": {
     "end_time": "2022-11-30T15:24:30.360928Z",
     "start_time": "2022-11-30T15:24:09.500552Z"
    }
   },
   "outputs": [],
   "source": [
    "paths = csiborgtools.read.Paths()\n",
    "cat = csiborgtools.read.CombinedCatalogue(paths, min_m500=1e13, max_dist=210)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "72f406e5",
   "metadata": {
    "ExecuteTime": {
     "end_time": "2022-11-30T15:24:49.921308Z",
     "start_time": "2022-11-30T15:24:49.893515Z"
    }
   },
   "outputs": [],
   "source": [
    "matcher = csiborgtools.match.RealisationsMatcher(cat)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "e165bef2",
   "metadata": {
    "ExecuteTime": {
     "end_time": "2022-11-30T15:24:50.732099Z",
     "start_time": "2022-11-30T15:24:50.364175Z"
    },
    "scrolled": false
   },
   "outputs": [],
   "source": [
    "n = 0\n",
    "match = matcher.cross_knn_position_single(n, 10)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "fd4f6323",
   "metadata": {
    "ExecuteTime": {
     "end_time": "2022-11-30T15:24:51.728908Z",
     "start_time": "2022-11-30T15:24:51.701737Z"
    }
   },
   "outputs": [],
   "source": [
    "ids = np.where(cat[n][\"m200\"] > 10**15.25)[0]\n",
    "print(ids.size)\n",
    "k = np.random.choice(ids)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "6dbdb916",
   "metadata": {
    "ExecuteTime": {
     "end_time": "2022-11-30T15:26:13.836117Z",
     "start_time": "2022-11-30T15:26:13.323459Z"
    }
   },
   "outputs": [],
   "source": [
    "col = plt.rcParams['axes.prop_cycle'].by_key()['color']\n",
    "\n",
    "\n",
    "plt.figure()\n",
    "\n",
    "r200 = cat[n][\"r200\"][k]\n",
    "m200 = cat[n][\"m200\"][k]\n",
    "vel = cat[n].angmomentum[k]\n",
    "    \n",
    "plt.title(r\"$\\log M_{{200c}} / M_\\odot = {:.3f}$\".format(np.log10(m200)))\n",
    "for i, j in enumerate(matcher.search_sim_indices(n)):\n",
    "    indxs, dist = match[i]\n",
    "    indxs = indxs[k]\n",
    "    dist = dist[k]\n",
    "    \n",
    "    sim = matcher.cosine_similarity(vel, cat[j].angmomentum[indxs])\n",
    "    sim = (sim + 1) / 2\n",
    "    \n",
    "    dlogmass = np.abs(np.log10(cat[j][\"m200\"][indxs] / m200))\n",
    "    \n",
    "    plt.scatter(dist / r200, dlogmass, s=50 * sim)\n",
    "    \n",
    "    \n",
    "plt.xlabel(r\"$\\Delta r_i / R_{200c}$\")\n",
    "plt.ylabel(r\"$|\\log \\dfrac{M_i}{M_{200c}}|$\")\n",
    "plt.tight_layout()\n",
    "plt.savefig(\"../plots/aligned.png\", dpi=450)\n",
    "plt.show()"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "e547ed49",
   "metadata": {},
   "outputs": [],
   "source": []
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "5ecbd448",
   "metadata": {},
   "outputs": [],
   "source": []
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "2ab2af25",
   "metadata": {
    "ExecuteTime": {
     "end_time": "2022-11-21T20:30:54.506179Z",
     "start_time": "2022-11-21T20:30:53.801870Z"
    }
   },
   "outputs": [],
   "source": [
    "fig, axs = plt.subplots(ncols=3, figsize=(9, 3), sharey=True, sharex=True)\n",
    "fig.subplots_adjust(wspace=0)\n",
    "for m, k in enumerate(ids):\n",
    "    r200 = cat[n][\"r200\"][k]\n",
    "    m200 = cat[n][\"m200\"][k]\n",
    "    \n",
    "    axs[m].set_title(r\"$\\log M_{{200c}} / M_\\odot = {:.3f}$\".format(np.log10(m200)))\n",
    "    for i, j in enumerate(matcher.search_sim_indices(n)):\n",
    "        indxs, dist = match[i]\n",
    "        indxs = indxs[k]\n",
    "        dist = dist[k]\n",
    "\n",
    "        dlogmass = np.abs(np.log10(cat[j][\"m200\"][indxs] / m200))\n",
    "        axs[m].scatter(dist / r200, dlogmass)\n",
    "    \n",
    "    \n",
    "for i in range(3):\n",
    "    axs[i].set_xlabel(r\"$\\Delta r_i / R_{200c}$\")\n",
    "axs[0].set_ylabel(r\"$|\\log \\dfrac{M_i}{M_{200c}}|$\")\n",
    "plt.tight_layout(w_pad=0)\n",
    "# plt.savefig(\"../plots/lowest_massive.png\", dpi=450)\n",
    "fig.show()"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "f0f59246",
   "metadata": {},
   "outputs": [],
   "source": []
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "a25c7146",
   "metadata": {},
   "outputs": [],
   "source": []
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "e2930abd",
   "metadata": {
    "ExecuteTime": {
     "end_time": "2022-11-21T10:56:11.296860Z",
     "start_time": "2022-11-21T10:56:10.813212Z"
    }
   },
   "outputs": [],
   "source": [
    "plt.figure()\n",
    "for k in range(cat.N-1):\n",
    "    plt.scatter(x[k, :, 1], x[k, :, 2])\n",
    "\n",
    "    \n",
    "plt.xlabel(r\"$\\Delta r_i / R_{200c}$\")\n",
    "plt.ylabel(r\"$|\\log \\dfrac{M_i}{M_{200c}}|$\")\n",
    "plt.savefig(\"../plots/example.png\", dpi=450)\n",
    "plt.show()"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "5101f569",
   "metadata": {
    "ExecuteTime": {
     "end_time": "2022-11-21T10:36:59.128848Z",
     "start_time": "2022-11-21T10:36:58.543085Z"
    }
   },
   "outputs": [],
   "source": [
    "x[:, 0, 2]"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "6794c154",
   "metadata": {},
   "outputs": [],
   "source": []
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "aa252ad3",
   "metadata": {
    "ExecuteTime": {
     "end_time": "2022-11-21T07:38:33.029175Z",
     "start_time": "2022-11-21T07:38:32.649968Z"
    }
   },
   "outputs": [],
   "source": [
    "cat.cross_knn_position(0, 0)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "8dc14292",
   "metadata": {},
   "outputs": [],
   "source": []
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "9f7cd638",
   "metadata": {},
   "outputs": [],
   "source": []
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "d655f5de",
   "metadata": {},
   "outputs": [],
   "source": []
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "9894fd1a",
   "metadata": {},
   "outputs": [],
   "source": []
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "41c21c3c",
   "metadata": {
    "ExecuteTime": {
     "end_time": "2022-11-21T07:05:14.278302Z",
     "start_time": "2022-11-21T07:05:14.249214Z"
    }
   },
   "outputs": [],
   "source": [
    "x = cat.positions[6, :].reshape(-1, 3)\n",
    "\n",
    "\n",
    "# x = np.asarray([0., 0., 0.]).reshape(-1, 3)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "440c00a3",
   "metadata": {
    "ExecuteTime": {
     "end_time": "2022-11-21T07:07:55.025995Z",
     "start_time": "2022-11-21T07:07:54.988489Z"
    }
   },
   "outputs": [],
   "source": [
    "cat.knn_position(x, 5)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "6c510eca",
   "metadata": {},
   "outputs": [],
   "source": []
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "c59341c0",
   "metadata": {
    "ExecuteTime": {
     "end_time": "2022-11-21T06:55:17.697688Z",
     "start_time": "2022-11-21T06:55:17.667672Z"
    }
   },
   "outputs": [],
   "source": [
    "dist, knns = cat.knn_position([5, 9], 5)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "004c5a79",
   "metadata": {
    "ExecuteTime": {
     "end_time": "2022-11-21T06:55:40.505297Z",
     "start_time": "2022-11-21T06:55:40.475623Z"
    }
   },
   "outputs": [],
   "source": [
    "dist"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "efcc87ac",
   "metadata": {
    "ExecuteTime": {
     "end_time": "2022-11-21T06:55:47.645798Z",
     "start_time": "2022-11-21T06:55:47.615986Z"
    }
   },
   "outputs": [],
   "source": [
    "knns"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "9bf75953",
   "metadata": {
    "ExecuteTime": {
     "end_time": "2022-11-21T06:27:19.883364Z",
     "start_time": "2022-11-21T06:27:19.435813Z"
    }
   },
   "outputs": [],
   "source": [
    "model = NearestNeighbors()"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "3e751553",
   "metadata": {
    "ExecuteTime": {
     "end_time": "2022-11-21T06:27:38.874030Z",
     "start_time": "2022-11-21T06:27:38.663757Z"
    }
   },
   "outputs": [],
   "source": [
    "model.fit(cat[0].positions)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "a8cb2bcf",
   "metadata": {
    "ExecuteTime": {
     "end_time": "2022-11-21T06:37:19.127300Z",
     "start_time": "2022-11-21T06:37:18.905607Z"
    }
   },
   "outputs": [],
   "source": [
    "p = cat[0].positions[:2, :].reshape(-1, 3)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "ae96df81",
   "metadata": {
    "ExecuteTime": {
     "end_time": "2022-11-21T06:37:19.354558Z",
     "start_time": "2022-11-21T06:37:19.324845Z"
    }
   },
   "outputs": [],
   "source": [
    "p"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "1e7b3655",
   "metadata": {
    "ExecuteTime": {
     "end_time": "2022-11-21T06:37:20.172812Z",
     "start_time": "2022-11-21T06:37:20.141347Z"
    }
   },
   "outputs": [],
   "source": [
    "model.kneighbors(p, n_neighbors=2)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "6d3bcb85",
   "metadata": {},
   "outputs": [],
   "source": []
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "307f3b62",
   "metadata": {},
   "outputs": [],
   "source": []
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "a885af97",
   "metadata": {
    "ExecuteTime": {
     "end_time": "2022-11-20T16:47:33.606111Z",
     "start_time": "2022-11-20T16:47:29.246847Z"
    }
   },
   "outputs": [],
   "source": [
    "cat = csiborgtools.io.Catalogue(9844, 1016, minimum_m500=0)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "2b73c9bc",
   "metadata": {
    "ExecuteTime": {
     "end_time": "2022-11-20T16:47:52.218696Z",
     "start_time": "2022-11-20T16:47:52.097392Z"
    }
   },
   "outputs": [],
   "source": [
    "cat[\"dec\"].size"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "bd76ed7a",
   "metadata": {},
   "outputs": [],
   "source": []
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "22abdd5c",
   "metadata": {
    "ExecuteTime": {
     "end_time": "2022-11-20T15:15:05.423239Z",
     "start_time": "2022-11-20T15:15:05.366755Z"
    }
   },
   "outputs": [],
   "source": [
    "planck = csiborgtools.io.PlanckClusters(\"../data/HFI_PCCS_SZ-union_R2.08.fits\")"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "20855f15",
   "metadata": {
    "ExecuteTime": {
     "end_time": "2022-11-20T15:15:05.479763Z",
     "start_time": "2022-11-20T15:15:05.425076Z"
    }
   },
   "outputs": [],
   "source": [
    "mcxc = csiborgtools.io.MCXCClusters(\"../data/mcxc.fits\")"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "60e7d566",
   "metadata": {
    "ExecuteTime": {
     "end_time": "2022-11-20T15:15:38.743815Z",
     "start_time": "2022-11-20T15:15:38.663202Z"
    }
   },
   "outputs": [],
   "source": [
    "planck.match_to_mcxc(mcxc)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "2941d725",
   "metadata": {
    "ExecuteTime": {
     "end_time": "2022-11-20T14:36:05.559176Z",
     "start_time": "2022-11-20T14:36:05.143516Z"
    }
   },
   "outputs": [],
   "source": [
    "planck[\"MSZ\"]"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "6347d993",
   "metadata": {},
   "outputs": [],
   "source": []
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "43293c40",
   "metadata": {
    "ExecuteTime": {
     "end_time": "2022-11-20T14:34:56.350019Z",
     "start_time": "2022-11-20T14:34:56.292284Z"
    }
   },
   "outputs": [],
   "source": [
    "planck.data.dtype.names"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "509d4fbb",
   "metadata": {
    "ExecuteTime": {
     "end_time": "2022-11-20T17:00:49.100716Z",
     "start_time": "2022-11-20T17:00:48.529803Z"
    }
   },
   "outputs": [],
   "source": [
    "csiborgtools.io.get_csiborg_ids(\"/mnt/extraspace/hdesmond\")"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "f39874e4",
   "metadata": {
    "ExecuteTime": {
     "end_time": "2022-11-20T12:48:39.888076Z",
     "start_time": "2022-11-20T12:48:39.824849Z"
    }
   },
   "outputs": [],
   "source": [
    "from astropy.cosmology import FlatLambdaCDM, z_at_value\n",
    "from astropy import units"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "d243cc59",
   "metadata": {
    "ExecuteTime": {
     "end_time": "2022-11-20T12:48:50.480986Z",
     "start_time": "2022-11-20T12:48:46.442880Z"
    }
   },
   "outputs": [],
   "source": [
    "Nsim = 9844\n",
    "Nsnap = 1016\n",
    "# data, box = utils.load_processed(Nsim, Nsnap)\n",
    "data, box = utils.load_processed(Nsim, Nsnap)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "344e6b96",
   "metadata": {
    "ExecuteTime": {
     "end_time": "2022-11-20T12:49:41.830512Z",
     "start_time": "2022-11-20T12:49:41.793552Z"
    }
   },
   "outputs": [],
   "source": [
    "X = np.vstack([data[\"peak_{}\".format(p)] for p in (\"x\", \"y\", \"z\")]).T"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "d8bb7dce",
   "metadata": {
    "ExecuteTime": {
     "end_time": "2022-11-20T12:51:00.688105Z",
     "start_time": "2022-11-20T12:51:00.262736Z"
    }
   },
   "outputs": [],
   "source": [
    "from sklearn.neighbors import NearestNeighbors"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "71026a85",
   "metadata": {
    "ExecuteTime": {
     "end_time": "2022-11-20T12:51:22.817846Z",
     "start_time": "2022-11-20T12:51:22.762451Z"
    }
   },
   "outputs": [],
   "source": [
    "neighbors = NearestNeighbors()"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "3ca4a7b7",
   "metadata": {
    "ExecuteTime": {
     "end_time": "2022-11-20T12:51:52.857117Z",
     "start_time": "2022-11-20T12:51:52.659741Z"
    }
   },
   "outputs": [],
   "source": [
    "neighbors.fit(X)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "6e5ec9c8",
   "metadata": {
    "ExecuteTime": {
     "end_time": "2022-11-20T12:52:50.459988Z",
     "start_time": "2022-11-20T12:52:50.429353Z"
    }
   },
   "outputs": [],
   "source": [
    "p = X[0, :]\n",
    "\n",
    "neighbors.kneighbors(p.reshape(-1,3))"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "304d53aa",
   "metadata": {
    "ExecuteTime": {
     "end_time": "2022-11-20T12:52:31.826535Z",
     "start_time": "2022-11-20T12:52:31.796380Z"
    }
   },
   "outputs": [],
   "source": []
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "a65dac24",
   "metadata": {
    "ExecuteTime": {
     "end_time": "2022-11-20T12:49:09.617079Z",
     "start_time": "2022-11-20T12:49:09.416602Z"
    }
   },
   "outputs": [],
   "source": [
    "data[\"peak_y\"]"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "45b638ac",
   "metadata": {},
   "outputs": [],
   "source": []
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "26c64abc",
   "metadata": {},
   "outputs": [],
   "source": []
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "07bc45e2",
   "metadata": {
    "ExecuteTime": {
     "end_time": "2022-11-18T15:18:08.182242Z",
     "start_time": "2022-11-18T15:18:08.106196Z"
    }
   },
   "outputs": [],
   "source": [
    "zcosmo = box.box2cosmoredshift(data[\"dist\"])\n",
    "z"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "272befd5",
   "metadata": {},
   "outputs": [],
   "source": []
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "b15427bb",
   "metadata": {
    "ExecuteTime": {
     "end_time": "2022-11-10T07:38:28.598904Z",
     "start_time": "2022-11-10T07:38:28.427656Z"
    }
   },
   "outputs": [],
   "source": [
    "plt.figure()\n",
    "\n",
    "m = data[\"m500\"] > 1e13\n",
    "plt.scatter(data[\"ra\"][m], data[\"dec\"][m], label=\"CSiBORG\", s=3)\n",
    "plt.scatter(groups[\"RA\"], groups[\"DEC\"], label=\"2M++ galaxy groups\", s=3, marker=\"x\")\n",
    "\n",
    "\n",
    "\n",
    "plt.show()"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "2489d85e",
   "metadata": {},
   "outputs": [],
   "source": []
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "2442bec3",
   "metadata": {
    "ExecuteTime": {
     "end_time": "2022-11-09T21:43:04.928922Z",
     "start_time": "2022-11-09T21:43:04.521323Z"
    }
   },
   "outputs": [],
   "source": []
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "7af8a421",
   "metadata": {
    "ExecuteTime": {
     "end_time": "2022-11-09T21:46:29.948541Z",
     "start_time": "2022-11-09T21:46:28.979688Z"
    }
   },
   "outputs": [],
   "source": [
    "RAcoma = (12 +  59/60 + 48.7 / 60**2) * 15\n",
    "DECcoma = 27 + 58 / 60 + 50 / 60**2\n",
    "\n",
    "\n",
    "RAvirgo = (12 + 27 / 60) * 15\n",
    "DECvirgo = 12 + 43/60\n",
    "\n",
    "\n",
    "\n",
    "plt.figure()\n",
    "\n",
    "\n",
    "plt.scatter(mcxc[\"RAdeg\"], mcxc[\"DEdeg\"], label=\"MCXC\")\n",
    "plt.scatter(planck[\"RA\"], planck[\"DEC\"], label=\"Plank\",s=8, c=\"red\")\n",
    "\n",
    "plt.scatter(RAcoma, DECcoma, label=\"Coma\", s=30, marker=\"x\")\n",
    "plt.scatter(RAvirgo, DECvirgo, label=\"Virgo\", s=30, marker=\"x\")\n",
    "\n",
    "plt.legend(framealpha=0.5)\n",
    "plt.xlabel(\"RA\")\n",
    "plt.ylabel(\"DEC\")\n",
    "plt.title(\"Clusters below 200 Mpc\")\n",
    "plt.savefig(\"../plots/clusters_radec.png\", dpi=450)\n",
    "\n",
    "plt.show()"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "01f5c4b3",
   "metadata": {},
   "outputs": [],
   "source": []
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "1b0a0f9e",
   "metadata": {},
   "outputs": [],
   "source": []
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "d6ef387a",
   "metadata": {
    "ExecuteTime": {
     "end_time": "2022-11-09T21:40:24.392358Z",
     "start_time": "2022-11-09T21:40:23.480949Z"
    },
    "scrolled": false
   },
   "outputs": [],
   "source": [
    "plt.figure()\n",
    "\n",
    "plt.scatter(mcxc[\"COMDIST\"], mcxc[\"M500\"], label=\"MCXC\")\n",
    "# yerr = np.vstack([planck[\"MSZ\"] - planck[\"MSZ_ERR_LOW\"],\n",
    "#                   planck[\"MSZ_ERR_UP\"] - planck[\"MSZ\"]])\n",
    "yerr = np.vstack([planck[\"MSZ_ERR_LOW\"], planck[\"MSZ_ERR_UP\"]])\n",
    "plt.errorbar(planck[\"COMDIST\"], planck[\"MSZ\"], yerr, label=\"Plank\", fmt=\" \", capsize=3, color=\"red\")\n",
    "\n",
    "plt.yscale(\"log\")\n",
    "plt.legend()\n",
    "plt.title(\"Clusters below 200 Mpc\")\n",
    "plt.xlabel(r\"$D_{\\rm c} / \\mathrm{Mpc}$\")\n",
    "plt.ylabel(r\"$M_{\\rm 500c} / M_\\odot$\")\n",
    "# plt.savefig(\"../plots/clusters_mass_dist.png\", dpi=450)\n",
    "\n",
    "plt.show()"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "be1920a5",
   "metadata": {},
   "outputs": [],
   "source": []
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "2c173e6a",
   "metadata": {
    "ExecuteTime": {
     "end_time": "2022-11-09T15:54:17.529059Z",
     "start_time": "2022-11-09T15:54:17.220209Z"
    }
   },
   "outputs": [],
   "source": [
    "d[\"MCXC\"]"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "40c7ab70",
   "metadata": {},
   "outputs": [],
   "source": []
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "5284fc28",
   "metadata": {
    "ExecuteTime": {
     "end_time": "2022-11-09T15:47:57.986432Z",
     "start_time": "2022-11-09T15:47:57.575714Z"
    }
   },
   "outputs": [],
   "source": [
    "plt.figure()\n",
    "# plt.scatter(d[\"RAdeg\"], d[\"DEdeg\"], s=1)\n",
    "plt.scatter(d[\"z\"], d[\"M500\"], s=1)\n",
    "\n",
    "plt.yscale(\"log\")\n",
    "plt.show()"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "7cfb2a1d",
   "metadata": {},
   "outputs": [],
   "source": []
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "b01c6134",
   "metadata": {},
   "outputs": [],
   "source": []
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "267eb013",
   "metadata": {
    "ExecuteTime": {
     "end_time": "2022-11-06T10:20:27.266576Z",
     "start_time": "2022-11-06T10:20:24.523404Z"
    }
   },
   "outputs": [],
   "source": [
    "Nsim = 9844\n",
    "Nsnap = 1016\n",
    "\n",
    "data = utils.load_processed(Nsim, Nsnap)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "f8c6d928",
   "metadata": {
    "ExecuteTime": {
     "end_time": "2022-11-06T10:24:20.697506Z",
     "start_time": "2022-11-06T10:24:19.631208Z"
    }
   },
   "outputs": [],
   "source": [
    "bins = np.arange(11.8, 15.4, 0.2)\n",
    "\n",
    "\n",
    "plt.figure()\n",
    "x, mu, std = csiborgtools.match.number_density(data, \"m200\", bins, 200, True)\n",
    "plt.errorbar(x, mu, std, capsize=4, label=r\"$M_{200c}$\")\n",
    "\n",
    "x, mu, std = csiborgtools.match.number_density(data, \"m500\", bins, 200, True)\n",
    "plt.errorbar(x, mu, std, capsize=4, label=r\"$M_{500c}$\")\n",
    "\n",
    "x, mu, std = csiborgtools.match.number_density(data, \"totpartmass\", bins, 200, True)\n",
    "plt.errorbar(x, mu, std, capsize=4, label=r\"$M_{\\rm tot}$\")\n",
    "\n",
    "x, mu, std = csiborgtools.match.number_density(data, \"mass_mmain\", bins, 200, True)\n",
    "plt.errorbar(x, mu, std, capsize=4, label=r\"$M_{\\rm mmain}$\")\n",
    "\n",
    "plt.legend()\n",
    "\n",
    "plt.yscale(\"log\")\n",
    "plt.xscale(\"log\")\n",
    "\n",
    "plt.ylabel(r\"$\\phi / (\\mathrm{Mpc}^{-3})~\\mathrm{dex}$\")\n",
    "plt.xlabel(r\"$M_{\\rm x}$\")\n",
    "plt.tight_layout()\n",
    "plt.savefig(\"../plots/HMF.png\", dpi=450)\n",
    "plt.show()"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "985d46c9",
   "metadata": {
    "ExecuteTime": {
     "end_time": "2022-11-06T10:20:46.078113Z",
     "start_time": "2022-11-06T10:20:44.524929Z"
    }
   },
   "outputs": [],
   "source": [
    "nfw = csiborgtools.fits.NFWProfile()\n",
    "m200_nfw = nfw.enclosed_mass(data[\"r200\"], data[\"Rs\"], data[\"rho0\"])\n",
    "\n",
    "\n",
    "\n",
    "plt.figure()\n",
    "\n",
    "plt.scatter(data[\"m200\"], m200_nfw, s=1)\n",
    "t = np.linspace(1e11, 1e15)\n",
    "plt.plot(t, t, c=\"red\", ls=\"--\", lw=1.5)\n",
    "plt.xscale(\"log\")\n",
    "plt.yscale(\"log\")\n",
    "\n",
    "plt.xlabel(r\"$M_{200c}$\")\n",
    "plt.ylabel(r\"$M_{\\mathrm{NFW}, 200c}$\")\n",
    "plt.tight_layout()\n",
    "plt.savefig(\"../plots/enclosed_vs_nfw.png\", dpi=450)\n",
    "plt.show()"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "8923ca86",
   "metadata": {},
   "outputs": [],
   "source": []
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "6eb8ba93",
   "metadata": {
    "ExecuteTime": {
     "end_time": "2022-11-06T10:22:19.498275Z",
     "start_time": "2022-11-06T10:22:17.953025Z"
    },
    "scrolled": false
   },
   "outputs": [],
   "source": [
    "logm200 = np.log10(data[\"m200\"])\n",
    "conc = data[\"conc\"]\n",
    "\n",
    "N = 10\n",
    "bins = np.linspace(logm200.min(), logm200.max(), N)\n",
    "x = [0.5*(bins[i] + bins[i + 1]) for i in range(N-1)]\n",
    "y = np.full((N - 1, 3), np.nan)\n",
    "for i in range(N - 1):\n",
    "    mask = (logm200 >= bins[i]) & (logm200 < bins[i + 1]) & np.isfinite(conc)\n",
    "    y[i, :] = np.percentile(conc[mask], [14, 50, 84])\n",
    "\n",
    "\n",
    "    \n",
    "    \n",
    "fig, axs = plt.subplots(nrows=2, sharex=True, figsize=(6.4, 6.4 * 1))\n",
    "fig.subplots_adjust(hspace=0)\n",
    "axs[0].plot(x, y[:, 1], c=\"red\", marker=\"o\")\n",
    "axs[0].fill_between(x, y[:, 0], y[:, 2], color=\"red\", alpha=0.25)\n",
    "axs[1].hist(logm200, bins=\"auto\", log=True)\n",
    "\n",
    "for b in bins:\n",
    "    for i in range(2):\n",
    "        axs[i].axvline(b, c=\"orange\", lw=0.5)\n",
    "\n",
    "axs[0].set_ylim(2, 10)\n",
    "axs[1].set_xlabel(r\"$M_{200c}$\")\n",
    "axs[0].set_ylabel(r\"$c_{200c}$\")\n",
    "axs[1].set_ylabel(r\"Counts\")\n",
    "\n",
    "plt.tight_layout(h_pad=0)\n",
    "plt.savefig(\"../plots/mass_concentration.png\", dpi=450)\n",
    "plt.show()"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "be26cbcc",
   "metadata": {},
   "outputs": [],
   "source": []
  }
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