Initial import

examples/2mpp_ares.ini

@@ -0,0 +1,322 @@
+[system]
+console_output=logares.txt
+mask_precision=0.9
+VERBOSE_LEVEL = 2
+N0 = 128 
+N1 = 128
+N2 = 128
+
+L0 = 677.7
+L1 = 677.7
+L2 = 677.7
+
+corner0 = -338.85
+corner1 = -338.85
+corner2 = -338.85
+
+NUM_MODES=100
+N_MC=1000
+test_mode=true
+
+# If true, the initial power spectrum of the chain is set to the cosmological one
+seed_cpower=true
+
+bias_0_sampler_generic_blocked=false
+bias_1_sampler_generic_blocked=false
+bias_2_sampler_generic_blocked=false
+bias_3_sampler_generic_blocked=false
+bias_4_sampler_generic_blocked=true
+
+# Indicate which samplers should be blocked for testing purposes
+
+[block_loop]
+# Indicate which samplers should be blocked for testing purposes
+#messenger_signal_blocked=false
+power_sampler_a_blocked=true
+power_sampler_b_blocked=true
+power_sampler_c_blocked=true
+#bias_sampler_blocked=false
+
+hades_sampler_blocked=true
+
+ares_heat=1.0
+
+[mcmc]
+number_to_generate=0
+random_ic=false
+init_random_scaling=1.0
+
+[run]
+NCAT = 16
+
+[cosmology]
+omega_r = 0
+fnl = 0
+omega_k = 0
+omega_m = 0.3175
+omega_b = 0.049
+omega_q = 0.6825
+w = -1
+wprime = 0
+n_s = 0.9624
+sigma8 = 0.8344
+h100 = 0.6711
+beta = 1.5 
+z0 = 0
+
+# 11.5 mag cut
+
+[catalog_0]
+datafile = 2MPP.txt
+maskdata = completeness_11_5.fits.gz
+bias=1
+radial_selection = schechter
+schechter_mstar = -23.28
+schechter_alpha = -0.94
+schechter_sampling_rate = 1000
+schechter_dmax = 700
+galaxy_bright_apparent_magnitude_cut = 9
+galaxy_faint_apparent_magnitude_cut = 11.5
+galaxy_bright_absolute_magnitude_cut = -21.50
+galaxy_faint_absolute_magnitude_cut = -21.00
+refbias = false
+nmean=1
+
+[catalog_1]
+datafile = 2MPP.txt
+maskdata = completeness_11_5.fits.gz
+radial_selection = schechter
+schechter_mstar = -23.28
+schechter_alpha = -0.94
+schechter_sampling_rate = 1000
+schechter_dmax = 700
+galaxy_bright_apparent_magnitude_cut = 9
+galaxy_faint_apparent_magnitude_cut = 11.5
+galaxy_bright_absolute_magnitude_cut = -22.00
+galaxy_faint_absolute_magnitude_cut = -21.50
+refbias = false
+nmean=1
+
+
+
+[catalog_2]
+datafile = 2MPP.txt
+maskdata = completeness_11_5.fits.gz
+radial_selection = schechter
+schechter_mstar = -23.28
+schechter_alpha = -0.94
+schechter_sampling_rate = 1000
+schechter_dmax = 700
+galaxy_bright_apparent_magnitude_cut = 9
+galaxy_faint_apparent_magnitude_cut = 11.5
+galaxy_bright_absolute_magnitude_cut = -22.50
+galaxy_faint_absolute_magnitude_cut = -22.00
+refbias = false
+nmean=1
+
+
+[catalog_3]
+datafile = 2MPP.txt
+maskdata = completeness_11_5.fits.gz
+radial_selection = schechter
+schechter_mstar = -23.28
+schechter_alpha = -0.94
+schechter_sampling_rate = 1000
+schechter_dmax = 700
+galaxy_bright_apparent_magnitude_cut = 9
+galaxy_faint_apparent_magnitude_cut = 11.5
+galaxy_bright_absolute_magnitude_cut = -23.00
+galaxy_faint_absolute_magnitude_cut = -22.50
+refbias = false
+nmean=1
+
+
+[catalog_4]
+datafile = 2MPP.txt
+maskdata = completeness_11_5.fits.gz
+radial_selection = schechter
+schechter_mstar = -23.28
+schechter_alpha = -0.94
+schechter_sampling_rate = 1000
+schechter_dmax = 700
+galaxy_bright_apparent_magnitude_cut = 9
+galaxy_faint_apparent_magnitude_cut = 11.5
+galaxy_bright_absolute_magnitude_cut = -23.50
+galaxy_faint_absolute_magnitude_cut = -23.00
+refbias = false
+nmean=1
+
+[catalog_5]
+datafile = 2MPP.txt
+maskdata = completeness_11_5.fits.gz
+radial_selection = schechter
+schechter_mstar = -23.28
+schechter_alpha = -0.94
+schechter_sampling_rate = 1000
+schechter_dmax = 700
+galaxy_bright_apparent_magnitude_cut = 9
+galaxy_faint_apparent_magnitude_cut = 11.5
+galaxy_bright_absolute_magnitude_cut = -24.00
+galaxy_faint_absolute_magnitude_cut = -23.50
+refbias = false
+nmean=1
+
+[catalog_6]
+datafile = 2MPP.txt
+maskdata = completeness_11_5.fits.gz
+radial_selection = schechter
+schechter_mstar = -23.28
+schechter_alpha = -0.94
+schechter_sampling_rate = 1000
+schechter_dmax = 700
+galaxy_bright_apparent_magnitude_cut = 9
+galaxy_faint_apparent_magnitude_cut = 11.5
+galaxy_bright_absolute_magnitude_cut = -24.50
+galaxy_faint_absolute_magnitude_cut = -24.00
+refbias = false
+nmean=1
+
+[catalog_7]
+datafile = 2MPP.txt
+maskdata = completeness_11_5.fits.gz
+radial_selection = schechter
+schechter_mstar = -23.28
+schechter_alpha = -0.94
+schechter_sampling_rate = 1000
+schechter_dmax = 700
+galaxy_bright_apparent_magnitude_cut = 9
+galaxy_faint_apparent_magnitude_cut = 11.5
+galaxy_bright_absolute_magnitude_cut = -25.00
+galaxy_faint_absolute_magnitude_cut = -24.50
+refbias = false
+nmean=1
+
+
+
+
+
+
+# 11.5 - 12.5 mag cut
+
+[catalog_8]
+datafile = 2MPP.txt
+maskdata = completeness_12_5.fits.gz
+radial_selection = schechter
+schechter_mstar = -23.28
+schechter_alpha = -0.94
+schechter_sampling_rate = 1000
+schechter_dmax = 700
+galaxy_bright_apparent_magnitude_cut = 11.5
+galaxy_faint_apparent_magnitude_cut = 12.5
+galaxy_bright_absolute_magnitude_cut = -21.50
+galaxy_faint_absolute_magnitude_cut = -21.00
+refbias = false
+nmean=1
+
+
+
+[catalog_9]
+datafile = 2MPP.txt
+maskdata = completeness_12_5.fits.gz
+radial_selection = schechter
+schechter_mstar = -23.28
+schechter_alpha = -0.94
+schechter_sampling_rate = 1000
+schechter_dmax = 700
+galaxy_bright_apparent_magnitude_cut = 11.5
+galaxy_faint_apparent_magnitude_cut = 12.5
+galaxy_bright_absolute_magnitude_cut = -22.00
+galaxy_faint_absolute_magnitude_cut = -21.50
+refbias = false
+nmean=1.
+
+[catalog_10]
+datafile = 2MPP.txt
+maskdata = completeness_12_5.fits.gz
+radial_selection = schechter
+schechter_mstar = -23.28
+schechter_alpha = -0.94
+schechter_sampling_rate = 1000
+schechter_dmax = 700
+galaxy_bright_apparent_magnitude_cut = 11.5
+galaxy_faint_apparent_magnitude_cut = 12.5
+galaxy_bright_absolute_magnitude_cut = -22.50
+galaxy_faint_absolute_magnitude_cut = -22.00
+refbias = false
+nmean=1
+
+[catalog_11]
+datafile = 2MPP.txt
+maskdata = completeness_12_5.fits.gz
+radial_selection = schechter
+schechter_mstar = -23.28
+schechter_alpha = -0.94
+schechter_sampling_rate = 1000
+schechter_dmax = 700
+galaxy_bright_apparent_magnitude_cut = 11.5
+galaxy_faint_apparent_magnitude_cut = 12.5
+galaxy_bright_absolute_magnitude_cut = -23.00
+galaxy_faint_absolute_magnitude_cut = -22.50
+refbias = false
+nmean=1
+
+[catalog_12]
+datafile = 2MPP.txt
+maskdata = completeness_12_5.fits.gz
+radial_selection = schechter
+schechter_mstar = -23.28
+schechter_alpha = -0.94
+schechter_sampling_rate = 1000
+schechter_dmax = 700
+galaxy_bright_apparent_magnitude_cut = 11.5
+galaxy_faint_apparent_magnitude_cut = 12.5
+galaxy_bright_absolute_magnitude_cut = -23.50
+galaxy_faint_absolute_magnitude_cut = -23.00
+refbias = false
+nmean=1
+
+[catalog_13]
+datafile = 2MPP.txt
+maskdata = completeness_12_5.fits.gz
+radial_selection = schechter
+schechter_mstar = -23.28
+schechter_alpha = -0.94
+schechter_sampling_rate = 1000
+schechter_dmax = 700
+galaxy_bright_apparent_magnitude_cut = 11.5
+galaxy_faint_apparent_magnitude_cut = 12.5
+galaxy_bright_absolute_magnitude_cut = -24.00
+galaxy_faint_absolute_magnitude_cut = -23.50
+refbias = false
+nmean=1
+
+[catalog_14]
+datafile = 2MPP.txt
+maskdata = completeness_12_5.fits.gz
+radial_selection = schechter
+schechter_mstar = -23.28
+schechter_alpha = -0.94
+schechter_sampling_rate = 1000
+schechter_dmax = 700
+galaxy_bright_apparent_magnitude_cut = 11.5
+galaxy_faint_apparent_magnitude_cut = 12.5
+galaxy_bright_absolute_magnitude_cut = -24.50
+galaxy_faint_absolute_magnitude_cut = -24.00
+refbias = false
+nmean=1
+
+[catalog_15]
+datafile = 2MPP.txt
+maskdata = completeness_12_5.fits.gz
+radial_selection = schechter
+schechter_mstar = -23.28
+schechter_alpha = -0.94
+schechter_sampling_rate = 1000
+schechter_dmax = 700
+galaxy_bright_apparent_magnitude_cut = 11.5
+galaxy_faint_apparent_magnitude_cut = 12.5
+galaxy_bright_absolute_magnitude_cut = -25.00
+galaxy_faint_absolute_magnitude_cut = -24.50
+refbias = false
+nmean=1
+

examples/2mpp_hades.ini

@@ -0,0 +1,410 @@
+# ------------------------------------------------------------------------------
+#  This is an example ini file for hades3. It is based on the classic
+#  parameters which were used in ares/borg 1.0. This is not advised to continue
+#  using this notation beyond 2.0 and one should switch to the example 
+#  in 2mpp_hades_v2.ini.txt
+#
+#  The description of the entries for [gravity] are documented on the wiki at
+#  the address:
+#  https://www.aquila-consortium.org/wiki/index.php?title=ARES_Configuration_file&oldid=1669
+#
+#  Otherwise please check the v2.0 entry in :
+#  https://www.aquila-consortium.org/wiki/index.php?title=ARES_Configuration_file
+#
+[system]
+
+# This specifies the base name of the log files generated by hades3
+console_output=logares.txt
+
+# This is an outdated way of setting the mask precision. Basically the accuracy
+# increase when this number goes to zero.
+mask_precision=0.9
+
+# Level of verbosity of the console output. The log files always contains the 
+# maximum level of verbosity allowed by the software.
+VERBOSE_LEVEL = 2
+
+# 3d mesh specification: grid size
+N0 = 32 
+N1 = 32
+N2 = 32
+
+# 3d mesh specification: physical scale
+L0 = 677.7
+L1 = 677.7
+L2 = 677.7
+
+# 3d mesh specification: physical corner of the mesh, w.r.t to the observer
+corner0 = -338.85
+corner1 = -338.85
+corner2 = -338.85
+
+# Indicate whether we will run a self-consistent test.
+test_mode=true
+
+# If true, the initial power spectrum of the chain is set to the cosmological one
+seed_cpower=true
+
+# These are flags to prevent the bias parameters to be sampled
+# *ONLY FOR GENERIC FRAMEWORK BIAS*
+# The template is bias_X_sampler_generic_blocked, where X is the parameter id.
+bias_0_sampler_generic_blocked=false
+bias_1_sampler_generic_blocked=false
+bias_2_sampler_generic_blocked=false
+bias_3_sampler_generic_blocked=false
+bias_4_sampler_generic_blocked=true
+
+# This is required but deprecated (and actually ignored)
+NUM_MODES=100
+
+[block_loop]
+# Indicate which samplers should be blocked for testing purposes
+#messenger_signal_blocked=false
+power_sampler_a_blocked=true
+power_sampler_b_blocked=true
+power_sampler_c_blocked=true
+#bias_sampler_blocked=false
+
+# Do not block density sampling
+hades_sampler_blocked=false
+
+
+ares_heat=1.0
+
+#
+# This specifies the forward model component, without the bias/selection part.
+#
+[gravity]
+model=LPT_CIC
+supersampling=2
+forcesampling=2
+pm_nsteps=30
+pm_start_z=69
+lightcone=false
+do_rsd=false
+a_initial=0.01
+a_final=1.0
+part_factor=1.2
+
+[mcmc]
+number_to_generate=1000
+
+# If random_ic is set to true, a gaussian random noise is generated before
+# starting the run
+random_ic=false
+# Scaling of random ic, either randomized or not.
+# This is multiplicative factor apply to the IC (after potential randomization)
+# before starting the run.
+# In the current setting nothing is randomized, thus the chain starts from the
+# mock data setup, there will not be any "burn in"
+init_random_scaling=1.0
+
+# Likelihood additional data
+# here 
+[likelihood]
+#colormap_sky=sky.fits
+
+[hades]
+# Other choices that are possible:
+#   GENERIC_POISSON_BROKEN_POWERLAW_BIAS_DEGRADE4
+#   GENERIC_POISSON_BROKEN_POWERLAW_BIAS
+#   BORG_POISSON
+#   .... (see wiki for bias models)
+#likelihood=ROBUST_POISSON_POWERLAW_BIAS
+likelihood=BORG_POISSON
+
+# Algorithm to use to sample density field
+#    HMC, QN-HMC, FROZEN-PHASE are available
+algorithm=HMC
+
+# Max epsilon for the HMC sampler
+max_epsilon=0.01
+# Max number of timesteps for HMC
+max_timesteps=50
+
+# Number of full loop to run before an MCMC file is produced
+mixing=1
+
+# Number of times to loop on bias samplers before doing one density sampler
+bias_mixing=1
+
+[run]
+NCAT = 16
+
+# ------------------------------------------------------------------------------
+# Section on cosmology
+[cosmology]
+omega_r = 0
+fnl = 0
+omega_k = 0
+omega_m = 0.3175
+omega_b = 0.049
+omega_q = 0.6825
+w = -1
+wprime = 0
+n_s = 0.9624
+sigma8 = 0.8344
+h100 = 0.6711
+beta = 1.5 
+z0 = 0
+
+
+# ------------------------------------------------------------------------------
+# Now we describe all catalogs
+
+# 11.5 mag cut
+
+[catalog_0]
+datafile = 2MPP.txt
+maskdata = completeness_11_5.fits.gz
+bias=1,1,0.1,0.100
+radial_selection = schechter
+schechter_mstar = -23.28
+schechter_alpha = -0.94
+schechter_sampling_rate = 1000
+schechter_dmax = 700
+galaxy_bright_apparent_magnitude_cut = 9
+galaxy_faint_apparent_magnitude_cut = 11.5
+galaxy_bright_absolute_magnitude_cut = -21.50
+galaxy_faint_absolute_magnitude_cut = -21.00
+refbias = false
+nmean=1
+
+[catalog_1]
+datafile = 2MPP.txt
+maskdata = completeness_11_5.fits.gz
+radial_selection = schechter
+schechter_mstar = -23.28
+schechter_alpha = -0.94
+schechter_sampling_rate = 1000
+schechter_dmax = 700
+galaxy_bright_apparent_magnitude_cut = 9
+galaxy_faint_apparent_magnitude_cut = 11.5
+galaxy_bright_absolute_magnitude_cut = -22.00
+galaxy_faint_absolute_magnitude_cut = -21.50
+refbias = false
+nmean=1
+
+
+
+[catalog_2]
+datafile = 2MPP.txt
+maskdata = completeness_11_5.fits.gz
+radial_selection = schechter
+schechter_mstar = -23.28
+schechter_alpha = -0.94
+schechter_sampling_rate = 1000
+schechter_dmax = 700
+galaxy_bright_apparent_magnitude_cut = 9
+galaxy_faint_apparent_magnitude_cut = 11.5
+galaxy_bright_absolute_magnitude_cut = -22.50
+galaxy_faint_absolute_magnitude_cut = -22.00
+refbias = false
+nmean=1
+
+
+[catalog_3]
+datafile = 2MPP.txt
+maskdata = completeness_11_5.fits.gz
+radial_selection = schechter
+schechter_mstar = -23.28
+schechter_alpha = -0.94
+schechter_sampling_rate = 1000
+schechter_dmax = 700
+galaxy_bright_apparent_magnitude_cut = 9
+galaxy_faint_apparent_magnitude_cut = 11.5
+galaxy_bright_absolute_magnitude_cut = -23.00
+galaxy_faint_absolute_magnitude_cut = -22.50
+refbias = false
+nmean=1
+
+
+[catalog_4]
+datafile = 2MPP.txt
+maskdata = completeness_11_5.fits.gz
+radial_selection = schechter
+schechter_mstar = -23.28
+schechter_alpha = -0.94
+schechter_sampling_rate = 1000
+schechter_dmax = 700
+galaxy_bright_apparent_magnitude_cut = 9
+galaxy_faint_apparent_magnitude_cut = 11.5
+galaxy_bright_absolute_magnitude_cut = -23.50
+galaxy_faint_absolute_magnitude_cut = -23.00
+refbias = false
+nmean=1
+
+[catalog_5]
+datafile = 2MPP.txt
+maskdata = completeness_11_5.fits.gz
+radial_selection = schechter
+schechter_mstar = -23.28
+schechter_alpha = -0.94
+schechter_sampling_rate = 1000
+schechter_dmax = 700
+galaxy_bright_apparent_magnitude_cut = 9
+galaxy_faint_apparent_magnitude_cut = 11.5
+galaxy_bright_absolute_magnitude_cut = -24.00
+galaxy_faint_absolute_magnitude_cut = -23.50
+refbias = false
+nmean=1
+
+[catalog_6]
+datafile = 2MPP.txt
+maskdata = completeness_11_5.fits.gz
+radial_selection = schechter
+schechter_mstar = -23.28
+schechter_alpha = -0.94
+schechter_sampling_rate = 1000
+schechter_dmax = 700
+galaxy_bright_apparent_magnitude_cut = 9
+galaxy_faint_apparent_magnitude_cut = 11.5
+galaxy_bright_absolute_magnitude_cut = -24.50
+galaxy_faint_absolute_magnitude_cut = -24.00
+refbias = false
+nmean=1
+
+[catalog_7]
+datafile = 2MPP.txt
+maskdata = completeness_11_5.fits.gz
+radial_selection = schechter
+schechter_mstar = -23.28
+schechter_alpha = -0.94
+schechter_sampling_rate = 1000
+schechter_dmax = 700
+galaxy_bright_apparent_magnitude_cut = 9
+galaxy_faint_apparent_magnitude_cut = 11.5
+galaxy_bright_absolute_magnitude_cut = -25.00
+galaxy_faint_absolute_magnitude_cut = -24.50
+refbias = false
+nmean=1
+
+
+
+
+
+
+# 11.5 - 12.5 mag cut
+
+[catalog_8]
+datafile = 2MPP.txt
+maskdata = completeness_12_5.fits.gz
+radial_selection = schechter
+schechter_mstar = -23.28
+schechter_alpha = -0.94
+schechter_sampling_rate = 1000
+schechter_dmax = 700
+galaxy_bright_apparent_magnitude_cut = 11.5
+galaxy_faint_apparent_magnitude_cut = 12.5
+galaxy_bright_absolute_magnitude_cut = -21.50
+galaxy_faint_absolute_magnitude_cut = -21.00
+refbias = false
+nmean=1
+
+
+
+[catalog_9]
+datafile = 2MPP.txt
+maskdata = completeness_12_5.fits.gz
+radial_selection = schechter
+schechter_mstar = -23.28
+schechter_alpha = -0.94
+schechter_sampling_rate = 1000
+schechter_dmax = 700
+galaxy_bright_apparent_magnitude_cut = 11.5
+galaxy_faint_apparent_magnitude_cut = 12.5
+galaxy_bright_absolute_magnitude_cut = -22.00
+galaxy_faint_absolute_magnitude_cut = -21.50
+refbias = false
+nmean=1.
+
+[catalog_10]
+datafile = 2MPP.txt
+maskdata = completeness_12_5.fits.gz
+radial_selection = schechter
+schechter_mstar = -23.28
+schechter_alpha = -0.94
+schechter_sampling_rate = 1000
+schechter_dmax = 700
+galaxy_bright_apparent_magnitude_cut = 11.5
+galaxy_faint_apparent_magnitude_cut = 12.5
+galaxy_bright_absolute_magnitude_cut = -22.50
+galaxy_faint_absolute_magnitude_cut = -22.00
+refbias = false
+nmean=1
+
+[catalog_11]
+datafile = 2MPP.txt
+maskdata = completeness_12_5.fits.gz
+radial_selection = schechter
+schechter_mstar = -23.28
+schechter_alpha = -0.94
+schechter_sampling_rate = 1000
+schechter_dmax = 700
+galaxy_bright_apparent_magnitude_cut = 11.5
+galaxy_faint_apparent_magnitude_cut = 12.5
+galaxy_bright_absolute_magnitude_cut = -23.00
+galaxy_faint_absolute_magnitude_cut = -22.50
+refbias = false
+nmean=1
+
+[catalog_12]
+datafile = 2MPP.txt
+maskdata = completeness_12_5.fits.gz
+radial_selection = schechter
+schechter_mstar = -23.28
+schechter_alpha = -0.94
+schechter_sampling_rate = 1000
+schechter_dmax = 700
+galaxy_bright_apparent_magnitude_cut = 11.5
+galaxy_faint_apparent_magnitude_cut = 12.5
+galaxy_bright_absolute_magnitude_cut = -23.50
+galaxy_faint_absolute_magnitude_cut = -23.00
+refbias = false
+nmean=1
+
+[catalog_13]
+datafile = 2MPP.txt
+maskdata = completeness_12_5.fits.gz
+radial_selection = schechter
+schechter_mstar = -23.28
+schechter_alpha = -0.94
+schechter_sampling_rate = 1000
+schechter_dmax = 700
+galaxy_bright_apparent_magnitude_cut = 11.5
+galaxy_faint_apparent_magnitude_cut = 12.5
+galaxy_bright_absolute_magnitude_cut = -24.00
+galaxy_faint_absolute_magnitude_cut = -23.50
+refbias = false
+nmean=1
+
+[catalog_14]
+datafile = 2MPP.txt
+maskdata = completeness_12_5.fits.gz
+radial_selection = schechter
+schechter_mstar = -23.28
+schechter_alpha = -0.94
+schechter_sampling_rate = 1000
+schechter_dmax = 700
+galaxy_bright_apparent_magnitude_cut = 11.5
+galaxy_faint_apparent_magnitude_cut = 12.5
+galaxy_bright_absolute_magnitude_cut = -24.50
+galaxy_faint_absolute_magnitude_cut = -24.00
+refbias = false
+nmean=1
+
+[catalog_15]
+datafile = 2MPP.txt
+maskdata = completeness_12_5.fits.gz
+radial_selection = schechter
+schechter_mstar = -23.28
+schechter_alpha = -0.94
+schechter_sampling_rate = 1000
+schechter_dmax = 700
+galaxy_bright_apparent_magnitude_cut = 11.5
+galaxy_faint_apparent_magnitude_cut = 12.5
+galaxy_bright_absolute_magnitude_cut = -25.00
+galaxy_faint_absolute_magnitude_cut = -24.50
+refbias = false
+nmean=1
+