481 lines
15 KiB
Bash
481 lines
15 KiB
Bash
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#!/bin/bash
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#+
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# ARES/HADES/BORG Package -- ./build.sh
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# Copyright (C) 2016-2018 Guilhem Lavaux <guilhem.lavaux@iap.fr>
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# Copyright (C) 2020 Florent Leclercq <florent.leclercq@polytechnique.org>
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#
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# Additional contributions from:
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# Guilhem Lavaux <guilhem.lavaux@iap.fr> (2023)
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#
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#+
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print_help()
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{
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cat <<EOF
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This is the build helper. The arguments are the following:
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--cmake CMAKE_BINARY instead of searching for cmake in the path,
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use the indicated binary
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--without-openmp build without openmp support (default with)
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--with-mpi build with MPI support (default without)
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--c-compiler COMPILER specify the C compiler to use (default to cc)
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--cxx-compiler COMPILER specify the CXX compiler to use (default to c++)
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--julia JULIA_BINARY specify the full path of julia interpreter
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--build-dir DIRECTORY specify the build directory (default to "build/" )
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--debug build for full debugging
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--no-debug-log remove all the debug output to increase speed on parallel
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filesystem.
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--perf add timing instructions and report in the log files
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--extra-flags FLAGS extra flags to pass to cmake
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--download-deps Predownload dependencies
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--use-predownload Use the predownloaded dependencies. They must be in
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downloads/
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--no-predownload Do not use predownloaded dependencies in downloads/
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--purge Force purging the build directory without asking
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questions.
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--native Try to activate all optimizations supported by the
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running CPU.
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--python[=PATH] Enable the building of the python extension. If PATH
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is provided it must point to the executable of your
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choice for (e.g \`/usr/bin/python3.9\`)
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--with-julia Build with Julia support (default false)
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--hades-python Enable hades-python (implies --python)
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--skip-building-tests Do not build all the tests
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--install-system-python Install python package in the python system dir
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--install-user-python Install python package in the user directory [default]
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Advanced usage:
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--eclipse Generate for eclipse use
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--ninja Use ninja builder
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--update-tags Update the TAGS file
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--use-system-boost[=PATH] Use the boost install available from the system. This
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reduces your footprint but also increases the
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possibilities of miscompilation and symbol errors.
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--use-system-fftw[=PATH] Same but for FFTW3. We require the prefix path.
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--use-system-gsl Same but for GSL
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--use-system-eigen=PATH Same but for EIGEN. Here we require the prefix path of
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the installation.
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--use-system-hdf5[=PATH] Same but for HDF5. Require an HDF5 with C++ support.
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The path indicate the prefix path of the installation of HDF5
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(e.g. /usr/local or /usr). By default it will use
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environment variables to guess it (HDF5_ROOT)
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After the configuration, you can further tweak the configuration using ccmake
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(if available on your system).
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EOF
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}
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add_skip()
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{
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if test "x${skip_url}" = x; then
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skip_url=$1
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else
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skip_url="${skip_url}|$1"
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fi
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}
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[[ x$ZSH_VERSION == x ]] || setopt local_options BASH_REMATCH
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C_DEFAULT=$(echo -e "\033[0m")
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C_WHITE=$(echo -e "\033[1m")
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C_RED=$(echo -e "\033[91;1m")
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C_ORANGE=$(echo -e "\033[33m")
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C_BG_RED=$(echo -e "\033[41m")
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C_BG_WHITE=$(echo -e "\033[107m")
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C_BG_GREEN=$(echo -e "\033[42m")
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errormsg() {
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# explained in
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# https://stackoverflow.com/questions/44440506/split-string-with-literal-n-in-a-for-loop
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str=$1
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while [[ $str ]]; do # iterate as long as we have input
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if [[ $str = *'\n'* ]]; then # if there's a '\n' sequence later...
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first=${str%%'\n'*} # put everything before it into 'first'
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rest=${str#*'\n'} # and put everything after it in 'rest'
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else # if there's no '\n' later...
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first=$str # then put the whole rest of the string in 'first'
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rest='' # and there is no 'rest'
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fi
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echo -e "${C_BG_RED}${first}${C_DEFAULT}"
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str=$rest
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done
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}
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noticemsg() {
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str=$1
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while [[ $str ]]; do # iterate as long as we have input
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if [[ $str = *'\n'* ]]; then # if there's a '\n' sequence later...
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first=${str%%'\n'*} # put everything before it into 'first'
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rest=${str#*'\n'} # and put everything after it in 'rest'
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else # if there's no '\n' later...
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first=$str # then put the whole rest of the string in 'first'
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rest='' # and there is no 'rest'
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fi
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echo -e "${C_WHITE}${C_BG_GREEN}${first}${C_DEFAULT}"
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str=$rest
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done
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}
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check_command() {
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cmd="$1"
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msg="$2"
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if ! command -v "${cmd}" > /dev/null 2>&1; then
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echo "${cmd} is not available. ${msg}";
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exit 1
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fi
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echo -e "-- ${C_WHITE}${C_BG_GREEN}Found:${C_DEFAULT} ${C_WHITE}${cmd}${C_DEFAULT}"
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}
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check_existence() {
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if test "$1" = "-q"; then
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quiet=1
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shift
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else
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quiet=0
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fi
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file="$1"
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error_message="$2"
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if ! test -e "${file}"; then
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echo "-- ${C_RED}${C_BG_WHITE}Not found:${C_DEFAULT} ${file}"
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echo "${error_message}"
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exit 1
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fi
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if test $quiet = 0; then
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echo -e "-- ${C_WHITE}${C_BG_GREEN}Found:${C_DEFAULT} ${file}"
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fi
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}
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echo "Ensure the current directory is ARES"
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check_existence -q "src/ares3.cpp" "Please move current working directory to ares3 source directory."
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check_existence -q "external/cosmotool/CMakeLists.txt" "Submodules were not cloned. Please run 'git submodule update --init --recursive' (WARNING! You might have to start from afresh.)."
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srcdir=$(pwd)
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build_dir=${srcdir}/build
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build_type=Release
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cmake=cmake
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cmake_flags=()
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c_compiler=$(which cc)
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cxx_compiler=$(which c++)
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USE_PREDOWNLOAD=1
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julia_binary=
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do_purge=0
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cmake_generator=
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while test $# -gt 0; do
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key="$1"
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case $key in
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--cmake)
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cmake="$2"
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shift
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;;
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--extra-flags)
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cmake_flags+=($2)
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shift
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;;
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--without-openmp)
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cmake_flags+=(-DENABLE_OPENMP:BOOL=OFF)
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;;
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--with-mpi)
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cmake_flags+=(-DENABLE_MPI:BOOL=ON)
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;;
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--c-compiler)
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c_compiler=$(which $2)
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shift
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;;
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--cxx-compiler)
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cxx_compiler=$(which $2)
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shift
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;;
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--julia)
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julia_binary="$2"
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shift
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;;
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--build-dir)
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build_dir="$2"
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shift
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;;
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--debug)
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build_type="Debug"
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;;
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--no-debug-log)
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cmake_flags+=(-DDISABLE_DEBUG_OUTPUT:BOOL=ON)
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;;
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--eclipse)
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cmake_generator=eclipse
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;;
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--native)
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cmake_flags+=(-DUSE_NATIVE_ARCH:BOOL=ON)
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;;
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--perf)
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cmake_flags+=(-DCONTEXT_TIMER:BOOL=ON)
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;;
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--with-julia)
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cmake_flags+=(-DBUILD_JULIA:BOOL=ON)
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;;
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--install-user-python)
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cmake_flags+=(-DINSTALL_PYTHON_LOCAL=ON)
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;;
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--install-system-python)
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cmake_flags+=(-DINSTALL_PYTHON_LOCAL=OFF)
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;;
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--python|--python=*)
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if [[ $1 =~ ^--python=(.+)$ ]]; then
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PYTHON_PATH=${BASH_REMATCH[1]}
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cmake_flags+=(-DPYTHON_EXECUTABLE=${PYTHON_PATH})
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fi
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cmake_flags+=(-DBUILD_PYTHON_EXTENSION:BOOL=ON)
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;;
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--hades-python)
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cmake_flags+=(-DBUILD_PYTHON_EXTENSION:BOOL=ON -DBUILD_PYTHON_EMBEDDER:BOOL=ON)
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;;
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--skip-building-tests)
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cmake_flags+=(-DBUILD_TESTING:BOOL=OFF)
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;;
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--ninja)
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cmake_generator=ninja
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;;
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--no-predownload)
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USE_PREDOWNLOAD=0
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;;
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--use-predownload)
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USE_PREDOWNLOAD=1
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;;
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--download-deps)
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#This step requires wget.
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if ! command -v wget > /dev/null 2>&1; then
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echo "The command wget is required to pre-download the dependencies. Please install it before retrying. Also it must be"
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echo "available from the PATH"
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exit 1
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fi
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lf=$'\n'
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grep -E "SET\\([a-zA-Z0-9_]+_URL" ${srcdir}/external/external_build.cmake |grep -e 'ftp://' | sed -e "s%^.*(\([a-zA-Z0-9_]*\)_URL[ ]*\"\(ftp.*\)\"[ ]*CACHE.*$%\1_URL \\$lf\2%g" > pre_list
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grep -E "SET\\([a-zA-Z0-9_]+_URL" ${srcdir}/external/external_build.cmake | grep -E 'https?://' |sed -e "s%^.*(\([a-zA-Z0-9_]*\)_URL[ ]*\"\(http.*\)\"[ ]*CACHE.*$%\1_URL \\$lf\2%g" >> pre_list
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test -e ${srcdir}/downloads || mkdir ${srcdir}/downloads;
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( \
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cd ${srcdir}/downloads; \
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rm -f deps.txt; \
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echo $dlist
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while read url_name; do \
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read d; \
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prename=$(echo $url_name | sed -e 's%^\([a-zA-Z0-9]\+\)_URL%\L\1%g') ; \
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d_tmp=$(echo $d | cut -d/ -f2-); \
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if [[ $d_tmp =~ /.*/([^/]*(tar\.|zip)[^/]*).* ]]; then \
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out_d=${BASH_REMATCH[1]}; \
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else \
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echo "Error matching $d"; \
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exit 1; \
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fi; \
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out_d=${prename}_$out_d; \
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echo "Downloading $d for ${url_name} to ${out_d}"; \
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if ! test -e ${out_d}; then
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wget --no-check-certificate --quiet -O $out_d $d || (echo "${C_RED}Failure to download $d to $out_d${C_DEFAULT}"; exit 1) || exit 1; \
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else
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echo "=> Already downloaded ${out_d}"; \
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fi; \
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echo ${url_name} >> deps.txt; \
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echo ${out_d} >> deps.txt; \
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done \
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) < pre_list || echo "${C_RED}Error.${C_DEFAULT} "
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rm -f pre_list
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echo "Done. You can now upload the ${srcdir}/downloads/ directory to the remote computer in the source directory and use --use-predownload."
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exit 0
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;;
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-h|--h|--he|--hel|--help)
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print_help
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exit 1
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;;
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--use-system-fftw|--use-system-fftw=*)
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if [[ $1 =~ ^--use-system-fftw=(.+)$ ]]; then
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FFTW_PATH=${BASH_REMATCH[1]}
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else
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if [[ $FFTW_INC =~ ^(.+)/include$ ]]; then
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FFTW_PATH=${BASH_REMATCH[1]}
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fi
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fi
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cmake_flags+=(-DINTERNAL_FFTW:BOOL=OFF)
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if [ "x$FFTW_PATH" != x ]; then
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CMAKE_PREFIX_PATH="${FFTW_PATH};${CMAKE_PREFIX_PATH}"
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fi
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add_skip FFTW_URL
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;;
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--use-system-hdf5|--use-system-hdf5=*)
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if [[ $1 =~ ^--use-system-hdf5=(.+)$ ]]; then
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HDF5_ROOT=${BASH_REMATCH[1]}
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cmake_flags+=(-DINTERNAL_HDF5:BOOL=OFF "-DHDF5_ROOT=${HDF5_ROOT}")
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else
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cmake_flags+=(-DINTERNAL_HDF5:BOOL=OFF)
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fi
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add_skip HDF5_URL
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;;
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--use-system-boost|--use-system-boost=*)
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cmake_flags+=(-DINTERNAL_BOOST:BOOL=OFF)
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if [[ $1 =~ ^--use-system-boost=(.+)$ ]]; then
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boost_root=${BASH_REMATCH[1]}
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cmake_flags+=("-DBOOST_ROOT=${boost_root}")
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fi
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add_skip BOOST_URL
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;;
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--use-system-eigen|--use-system-eigen=*)
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cmake_flags+=(-DINTERNAL_EIGEN:BOOL=OFF)
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if [[ $1 =~ ^--use-system-eigen=(.+)$ ]]; then
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EIGEN_PATH=${BASH_REMATCH[1]}
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cmake_flags+=(-DEIGEN_PATH:PATH=${EIGEN_PATH})
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fi
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add_skip EIGEN_URL
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;;
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--use-system-gsl)
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cmake_flags+=(-DINTERNAL_GSL:BOOL=OFF)
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if ! command -v gsl-config > /dev/null 2>&1; then
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errormsg "Missing 'gsl-config' in the execution path.\n I cannot detect location of GSL"
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exit 1
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fi
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CMAKE_PREFIX_PATH="$(gsl-config --prefix);${CMAKE_PREFIX_PATH}"
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add_skip GSL_URL
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;;
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--purge)
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do_purge=1
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;;
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--update-tags)
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echo "Updating tags file."
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rm -f ctags
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for module in . extra/hades extra/borg extra/virbius extra/hmclet extra/dm_sheet; do
|
||
|
|
if test -e ${module}; then
|
||
|
|
(cd ${module}; git ls-files '*.[ch]pp' | awk "{ print \"${module}/\" \$0;}") | xargs ctags -a
|
||
|
|
fi
|
||
|
|
done
|
||
|
|
|
||
|
|
echo "Done. Exiting."
|
||
|
|
exit 0
|
||
|
|
;;
|
||
|
|
*)
|
||
|
|
echo "Unknown option. Abort."
|
||
|
|
print_help
|
||
|
|
exit 1
|
||
|
|
;;
|
||
|
|
esac
|
||
|
|
shift
|
||
|
|
done
|
||
|
|
|
||
|
|
|
||
|
|
if test ${USE_PREDOWNLOAD} = 1; then
|
||
|
|
if ! test -d "${srcdir}/downloads"; then
|
||
|
|
echo "--- ${C_RED}No deps predownloaded. Stop${C_DEFAULT} ---"
|
||
|
|
exit 1
|
||
|
|
fi
|
||
|
|
cmd=$( (
|
||
|
|
flags=()
|
||
|
|
while read url_name; do
|
||
|
|
if [[ "${url_name}" =~ ^(${skip_url})$ ]]; then
|
||
|
|
read path;
|
||
|
|
continue
|
||
|
|
fi
|
||
|
|
read path;
|
||
|
|
path="${srcdir}/downloads/${path}";
|
||
|
|
flags+=("-D${url_name}:URL=file://${path}");
|
||
|
|
done;
|
||
|
|
echo "cmake_flags+=(${flags[@]})"
|
||
|
|
) < ${srcdir}/downloads/deps.txt )
|
||
|
|
eval ${cmd}
|
||
|
|
else
|
||
|
|
echo "--- ${C_ORANGE}WARNING: Not using predownloaded deps.${C_DEFAULT} --- "
|
||
|
|
fi
|
||
|
|
export CMAKE_PREFIX_PATH
|
||
|
|
#CMAKE_PREFIX_PATH=$(printf %q "${CMAKE_PREFIX_PATH}")
|
||
|
|
|
||
|
|
cmake_flags+=(-DARES_PREFIX_PATH=${CMAKE_PREFIX_PATH} -DCMAKE_BUILD_TYPE=${build_type} -DCMAKE_C_COMPILER=${c_compiler} -DCMAKE_CXX_COMPILER=${cxx_compiler})
|
||
|
|
if test x"${julia_binary}" != x""; then
|
||
|
|
cmake_flags+=(-DJULIA_EXECUTABLE=${julia_binary})
|
||
|
|
fi
|
||
|
|
|
||
|
|
if test x$cmake_generator = "xninja"; then
|
||
|
|
cmake_flags+=("-GNinja")
|
||
|
|
elif test x$cmake_generator = "xeclipse"; then
|
||
|
|
cmake_flags+=("-GEclipse CDT4 - Unix Makefiles")
|
||
|
|
fi
|
||
|
|
|
||
|
|
echo "Summary of CMAKE_FLAGS:"
|
||
|
|
for f in "${cmake_flags[@]}"; do
|
||
|
|
printf " %s\n" "$f"
|
||
|
|
done
|
||
|
|
|
||
|
|
if test -e ${build_dir}; then
|
||
|
|
if test x${do_purge} == x1; then
|
||
|
|
rm -f -r ${build_dir}
|
||
|
|
else
|
||
|
|
while true; do
|
||
|
|
echo -n "${build_dir} already exists. Remove ? [y/n] "
|
||
|
|
read RESULT
|
||
|
|
if test "x${RESULT}" = "xn"; then
|
||
|
|
echo "Abort"
|
||
|
|
exit 1
|
||
|
|
fi
|
||
|
|
if test "x${RESULT}" = "xy"; then
|
||
|
|
echo "Removing"
|
||
|
|
rm -f -r ${build_dir}
|
||
|
|
break
|
||
|
|
fi
|
||
|
|
done
|
||
|
|
fi
|
||
|
|
fi
|
||
|
|
|
||
|
|
check_command "${cmake}" "Please install CMake or provide --cmake to build.sh"
|
||
|
|
#check_command autoconf "Autoconf is missing. Please install it."
|
||
|
|
#check_command automake "Automake is missing. Please install it."
|
||
|
|
check_command patch "Patch is missing. Please install it."
|
||
|
|
check_command pkg-config "Pkgconfig is missing. Please install it."
|
||
|
|
|
||
|
|
|
||
|
|
if ! mkdir -p ${build_dir}; then
|
||
|
|
echo -e "${C_WHITE}--------------------------${C_DEFAULT}"
|
||
|
|
echo -e "${C_BG_RED}Cannot create build directory.${C_DEFAULT}"
|
||
|
|
echo -e "${C_WHITE}--------------------------${C_DEFAULT}"
|
||
|
|
echo
|
||
|
|
exit 1
|
||
|
|
fi
|
||
|
|
|
||
|
|
if ! ( \
|
||
|
|
cd ${build_dir} && \
|
||
|
|
${cmake} "${cmake_flags[@]}" ${srcdir}; \
|
||
|
|
exit $? \
|
||
|
|
); then
|
||
|
|
echo -e "${C_WHITE}-------------------------------------------------${C_DEFAULT}"
|
||
|
|
echo -e "${C_BG_RED}An error occured in CMake.${C_DEFAULT}"
|
||
|
|
echo -e "${C_BG_RED}Please collect the messages above in your report.${C_DEFAULT}"
|
||
|
|
echo -e "${C_WHITE}-------------------------------------------------${C_DEFAULT}"
|
||
|
|
echo
|
||
|
|
exit 1
|
||
|
|
fi
|
||
|
|
|
||
|
|
cat <<EOF
|
||
|
|
------------------------------------------------------------------
|
||
|
|
|
||
|
|
${C_BG_GREEN}Configuration done.${C_DEFAULT}
|
||
|
|
Move to ${build_dir} and type 'make' now.
|
||
|
|
Please check the configuration of your MPI C compiler. You may need
|
||
|
|
to set an environment variable to use the proper compiler.
|
||
|
|
|
||
|
|
Some example (for SH/BASH shells):
|
||
|
|
- OpenMPI:
|
||
|
|
OMPI_CC=${c_compiler}
|
||
|
|
OMPI_CXX=${cxx_compiler}
|
||
|
|
export OMPI_CC OMPI_CXX
|
||
|
|
|
||
|
|
------------------------------------------------------------------
|
||
|
|
|
||
|
|
EOF
|
||
|
|
# ARES TAG: authors_num = 2
|
||
|
|
# ARES TAG: name(0) = Guilhem Lavaux
|
||
|
|
# ARES TAG: email(0) = guilhem.lavaux@iap.fr
|
||
|
|
# ARES TAG: year(0) = 2016-2018
|
||
|
|
# ARES TAG: name(1) = Florent Leclercq
|
||
|
|
# ARES TAG: email(1) = florent.leclercq@polytechnique.org
|
||
|
|
# ARES TAG: year(1) = 2020
|